View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8175_high_2 (Length: 654)
Name: NF8175_high_2
Description: NF8175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8175_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 315; Significance: 1e-177; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 9 - 390
Target Start/End: Complemental strand, 53791840 - 53791456
Alignment:
| Q |
9 |
agaagcagagacatggttgatgattggtttggtttcacagttcagcttactactgaaaaactaa-gcacccgtgagacaaacatgtgcaacgtgtacaac |
107 |
Q |
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| T |
53791840 |
agaaacagagacatggttgatgattggtttggtttcacagttcagcttact---gaaaaactaaagcacccgtgagacaaacatgtgcaacgtgtacaac |
53791744 |
T |
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| Q |
108 |
attggagttaaataaataaagtcaaataactcatttgttcgtttcgtatgcatacaaaactaacattatatctactctatactatatacaaaactaagta |
207 |
Q |
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| T |
53791743 |
attggagttaaataaataaagtcaaataactcatttgttcgttttgtatgcatacaaaactaacattatatctactctatactatatacaaaactaagta |
53791644 |
T |
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| Q |
208 |
gcttttcttccttg-----tatttagcctgcctttgcgttattgaact-acttttttggaagacacaaacattatttcttggaaaaagactttccatgtc |
301 |
Q |
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| T |
53791643 |
gcttttcttccttgtattgtatttagcctggctttgcgttattgaactaacttttttggaagacacaaacattatttcttggaaaaagactttccatgtc |
53791544 |
T |
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| Q |
302 |
ttgttcatggtattgccaagatgaaaataacaagccagggcagcgaggttttaaattattgattgaaaactttttatgagaaaagaaaa |
390 |
Q |
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| T |
53791543 |
ttgttcatggtattgccaagatgaaaataacaagccagggcagcgtggttttaaattattgattgaaaac-ttttatgagaaaagaaaa |
53791456 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 447 - 524
Target Start/End: Complemental strand, 53791152 - 53791075
Alignment:
| Q |
447 |
atagtattaacttacctaatacacgtagaattaaaattagaattattgtggcataccaacatggtcccaaaatgtgaa |
524 |
Q |
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| T |
53791152 |
atagtattaacttacgtaatacacgtagaattaaaattagaattattgtggcataccaacatggtcccaaaatgtgaa |
53791075 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 388 - 452
Target Start/End: Complemental strand, 53791352 - 53791288
Alignment:
| Q |
388 |
aaagactataatgaatcttcactctattatttttatgttgtaagatatttattagagatatagta |
452 |
Q |
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| T |
53791352 |
aaagactataaggaatctttactctattatttttatgttgtaagatatttattagagatatagta |
53791288 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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