View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8175_high_21 (Length: 397)
Name: NF8175_high_21
Description: NF8175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8175_high_21 |
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Alignment Details
Target: chr2 (Bit Score: 154; Significance: 1e-81; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 13 - 230
Target Start/End: Complemental strand, 8551339 - 8551120
Alignment:
| Q |
13 |
ataatactgacatttgtttttgtttagtattgttattaattaagcaaaaattgtaattggttgtttatcgaataaataaaagaactgctattccaacgct |
112 |
Q |
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| T |
8551339 |
ataatactgacatttgtttttgtttagtattgttattaattaagcaaaaattgtaattggttgtttatcgaataaataaaagaactgctattccaacact |
8551240 |
T |
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| Q |
113 |
agaagctgtatatagtaatctg--nnnnnnnnngttctaaccttctccatatttgcaatttttcttataattattacacgttttttagtatagatgtaca |
210 |
Q |
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| T |
8551239 |
agaagctgtatatagtaatctgtttttttttttgttctaaacttcttcataattgcaatttttcctataattatgacacgttttttagtaaagatgtaca |
8551140 |
T |
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| Q |
211 |
atattataaggtgtactata |
230 |
Q |
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| T |
8551139 |
atattataaggtgtactata |
8551120 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 158 - 225
Target Start/End: Complemental strand, 43245977 - 43245911
Alignment:
| Q |
158 |
catatttgcaatttttcttataattattacacgttttttagtatagatgtacaatattataaggtgta |
225 |
Q |
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| T |
43245977 |
catatttgcagtttttct-ataactattacatgtttcatagtaaacatgtacaatattataaggtgta |
43245911 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 61; Significance: 4e-26; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 229 - 363
Target Start/End: Original strand, 18333727 - 18333860
Alignment:
| Q |
229 |
taattctttaaggcaagacaatttactaataggggaaggtccgtaggatagttttatatggtgcaataaagatacatggtatctannnnnnngttgatat |
328 |
Q |
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| T |
18333727 |
taattctttaatgcgagataatttactaaaaggggaaggtccataggatagttttttacagtgcaataaagttacatagtgtcta-ttttttgttgatat |
18333825 |
T |
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| Q |
329 |
aagaggtatttttatgggtttgccttggtatcgtg |
363 |
Q |
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| T |
18333826 |
aagaggtattttcatgggtttgccttggtatcgtg |
18333860 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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