View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8175_high_24 (Length: 393)

Name: NF8175_high_24
Description: NF8175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8175_high_24
NF8175_high_24
[»] chr8 (4 HSPs)
chr8 (20-277)||(41375621-41375878)
chr8 (289-379)||(41375498-41375588)
chr8 (303-362)||(10621383-10621442)
chr8 (289-359)||(30659984-30660054)
[»] chr7 (3 HSPs)
chr7 (289-362)||(44662457-44662530)
chr7 (289-359)||(46195949-46196019)
chr7 (290-362)||(6548707-6548778)
[»] chr2 (3 HSPs)
chr2 (289-362)||(24202178-24202251)
chr2 (290-330)||(38790090-38790130)
chr2 (316-353)||(40473543-40473580)
[»] chr6 (1 HSPs)
chr6 (301-353)||(7234002-7234054)
[»] chr3 (3 HSPs)
chr3 (291-362)||(9489505-9489576)
chr3 (303-353)||(27394544-27394594)
chr3 (301-353)||(40160772-40160824)
[»] chr1 (1 HSPs)
chr1 (306-362)||(32660858-32660914)


Alignment Details
Target: chr8 (Bit Score: 193; Significance: 1e-105; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 20 - 277
Target Start/End: Complemental strand, 41375878 - 41375621
Alignment:
Q  20 acctcttcatgtcaaaaagcttaaaaatccaatatgttttcatgatatgttcttcttctttggcatgaacagattcccaaccaggacgaaaatggatgaa 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  41375878 acctcttcatgtcaaaaagcttaaaaatccaatatgttttcatgatatgttcttcttctttggcatgaacagattcccaaccaggacgaaaatggattaa 41375779  T
Q  120 aactgcaatatctatttgacagacgaggacgagaactcgatgaagatgagtgaaaggaagggaaagactagtatctgatttcttgtgttaggggtttaaa 219  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||  |||||||||||||||||||||||||||    
T  41375778 aactgcaatatctatttgacagacgaggacgagaactcgatgaagatgagtgaaaggaaggggaagactaggttctgatttcttgtgttaggggtttaaa 41375679  T
Q  220 ttnnnnnnnnnnnnnnnctaaatctaaactgttaattaaattcgacggctcatgttaa 277  Q
    ||               |||||||||||||||||||||||| ||||||||||||||||    
T  41375678 ttaaaaaatgaaaaaaactaaatctaaactgttaattaaatccgacggctcatgttaa 41375621  T

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Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 289 - 379
Target Start/End: Complemental strand, 41375588 - 41375498
Alignment:
Q  289 tggagaaatttattttaaaggtgaaatagtggggtgtccgagattcaaacccaagcccctgcatacataatgcaaatgaactaagctcaca 379  Q
    |||||||||| | |||||||||||||||||| ||||||||   ||||||||| | ||||| |||||||||| ||| ||| |||||||||||    
T  41375588 tggagaaattcactttaaaggtgaaatagtgaggtgtccggagttcaaaccccaacccctacatacataatacaagtgagctaagctcaca 41375498  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 303 - 362
Target Start/End: Original strand, 10621383 - 10621442
Alignment:
Q  303 ttaaaggtgaaatagtggggtgtccgagattcaaacccaagcccctgcatacataatgca 362  Q
    |||||||||||| | ||||||||||| | |||||||||   |||||||||||||||||||    
T  10621383 ttaaaggtgaaaaaatggggtgtccggggttcaaaccctgacccctgcatacataatgca 10621442  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 289 - 359
Target Start/End: Complemental strand, 30660054 - 30659984
Alignment:
Q  289 tggagaaatttattttaaaggtgaaatagtggggtgtccgagattcaaacccaagcccctgcatacataat 359  Q
    |||| |||||||  |||||||||||||||||||||||||| | ||  |||||   ||||||||||||||||    
T  30660054 tggaaaaatttaccttaaaggtgaaatagtggggtgtccggggtttgaaccccgacccctgcatacataat 30659984  T

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Target: chr7 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 289 - 362
Target Start/End: Original strand, 44662457 - 44662530
Alignment:
Q  289 tggagaaatttattttaaaggtgaaatagtggggtgtccgagattcaaacccaagcccctgcatacataatgca 362  Q
    |||||||||| |  |||||||||||||||||||||||||| | ||| |||||  ||||||||||||||||||||    
T  44662457 tggagaaattcaccttaaaggtgaaatagtggggtgtccggggttcgaaccccggcccctgcatacataatgca 44662530  T

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Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 289 - 359
Target Start/End: Complemental strand, 46196019 - 46195949
Alignment:
Q  289 tggagaaatttattttaaaggtgaaatagtggggtgtccgagattcaaacccaagcccctgcatacataat 359  Q
    |||||||||| |  |||||||||||||||||||||||||| | |||||||||   ||||||||||||||||    
T  46196019 tggagaaattcaccttaaaggtgaaatagtggggtgtccggggttcaaaccccgacccctgcatacataat 46195949  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 290 - 362
Target Start/End: Original strand, 6548707 - 6548778
Alignment:
Q  290 ggagaaatttattttaaaggtgaaatagtggggtgtccgagattcaaacccaagcccctgcatacataatgca 362  Q
    ||||||||| |  ||||||||||||||||||||||||||   ||| |||||  | ||||||||||||||||||    
T  6548707 ggagaaattcaccttaaaggtgaaatagtggggtgtccggagttcgaaccc-cggccctgcatacataatgca 6548778  T

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Target: chr2 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 289 - 362
Target Start/End: Complemental strand, 24202251 - 24202178
Alignment:
Q  289 tggagaaatttattttaaaggtgaaatagtggggtgtccgagattcaaacccaagcccctgcatacataatgca 362  Q
    |||||||||| |  |||||||||||||||||||||||||| | ||| |||||  ||||||||||||||||||||    
T  24202251 tggagaaattcaccttaaaggtgaaatagtggggtgtccggggttcgaaccccggcccctgcatacataatgca 24202178  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 290 - 330
Target Start/End: Original strand, 38790090 - 38790130
Alignment:
Q  290 ggagaaatttattttaaaggtgaaatagtggggtgtccgag 330  Q
    ||||||||| || ||||||||||||||||||||||||||||    
T  38790090 ggagaaattcatcttaaaggtgaaatagtggggtgtccgag 38790130  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 316 - 353
Target Start/End: Original strand, 40473543 - 40473580
Alignment:
Q  316 agtggggtgtccgagattcaaacccaagcccctgcata 353  Q
    ||||||||||||||| ||||||||| ||||||||||||    
T  40473543 agtggggtgtccgaggttcaaaccccagcccctgcata 40473580  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 301 - 353
Target Start/End: Complemental strand, 7234054 - 7234002
Alignment:
Q  301 ttttaaaggtgaaatagtggggtgtccgagattcaaacccaagcccctgcata 353  Q
    |||| ||||||||  ||||||||||||||| ||||||||| ||||||||||||    
T  7234054 ttttcaaggtgaataagtggggtgtccgaggttcaaaccccagcccctgcata 7234002  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000009; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 291 - 362
Target Start/End: Complemental strand, 9489576 - 9489505
Alignment:
Q  291 gagaaatttattttaaaggtgaaatagtggggtgtccgagattcaaacccaagcccctgcatacataatgca 362  Q
    |||||||| || |||||||||||||||| |||| |||  | ||| |||||  ||||||||||||||||||||    
T  9489576 gagaaattcatcttaaaggtgaaatagtagggtatccagggttcgaaccccggcccctgcatacataatgca 9489505  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 303 - 353
Target Start/End: Complemental strand, 27394594 - 27394544
Alignment:
Q  303 ttaaaggtgaaatagtggggtgtccgagattcaaacccaagcccctgcata 353  Q
    |||||||||||  ||||||||||||| | ||||||||| ||||||||||||    
T  27394594 ttaaaggtgaataagtggggtgtccggggttcaaaccccagcccctgcata 27394544  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 301 - 353
Target Start/End: Complemental strand, 40160824 - 40160772
Alignment:
Q  301 ttttaaaggtgaaatagtggggtgtccgagattcaaacccaagcccctgcata 353  Q
    |||||||||||||  ||||||||||||| | ||||||||| |||||| |||||    
T  40160824 ttttaaaggtgaataagtggggtgtccggggttcaaaccccagccccggcata 40160772  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 306 - 362
Target Start/End: Complemental strand, 32660914 - 32660858
Alignment:
Q  306 aaggtgaaatagtggggtgtccgagattcaaacccaagcccctgcatacataatgca 362  Q
    ||||||||| ||||||||||||| | ||  ||||| |||||||||||| ||||||||    
T  32660914 aaggtgaaaaagtggggtgtccggggtttgaaccccagcccctgcatatataatgca 32660858  T

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