View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8175_high_28 (Length: 381)
Name: NF8175_high_28
Description: NF8175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8175_high_28 |
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Alignment Details
Target: chr5 (Bit Score: 340; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 18 - 373
Target Start/End: Complemental strand, 12077719 - 12077364
Alignment:
| Q |
18 |
taagagagccatttctcaagaattatctttctacatgtggaagctcattgctccattgatgttatcaacttccaagacaaaagatattctttgaaaagca |
117 |
Q |
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| T |
12077719 |
taagagagccatttctcaagaattatctttctacatgtggaagctcattgctccattgatgttatcaacttccaagacaaaagatattctttgaaaagca |
12077620 |
T |
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| Q |
118 |
tccccacttcaaatgaaatttttaatcaccattctaagttgctttaataaagttttaggccaggcatatacatgaaaagagtaaacacacatacttttga |
217 |
Q |
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| T |
12077619 |
tccccacttcaaatgaaatttttaatcaccattctaagttgctttaataaagttttaggccaggcatatacatgaaaagagtaaacacgcatacttttga |
12077520 |
T |
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| Q |
218 |
ccacaaaatttacaagctgaaccctccccatgatagttaggagacaacccgtccaagtaaccaacttaactttgattttatcataggttctaataactta |
317 |
Q |
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| T |
12077519 |
ccacaaaatttacaagctgaaccctccccatgatagttaggagacaacccttccaagtaaccaacttaactttgattttatcataggttctaataactta |
12077420 |
T |
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| Q |
318 |
ttcattaatgtaaaaaatcaaatgggataatcgatcgccatgcccaacctctctgc |
373 |
Q |
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| T |
12077419 |
ttcattaatgtaaaaaatcaaatgggataatggatcgccatgtccaacctctctgc |
12077364 |
T |
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