View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8175_high_30 (Length: 376)
Name: NF8175_high_30
Description: NF8175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8175_high_30 |
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Alignment Details
Target: chr1 (Bit Score: 293; Significance: 1e-164; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 24 - 366
Target Start/End: Original strand, 40697635 - 40697976
Alignment:
| Q |
24 |
tcatatgtttttgaaaaattgtttatatatggaccttttccgtttattaacatccaacttggggaaacaatatccatagtgtccaacctgtccctaacat |
123 |
Q |
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| T |
40697635 |
tcatatgtttttgaaaaattgttcatatatggaccttttccgtttattaacatccaacttggggaaacaatatccatagtgtccaacctgtccctaacat |
40697734 |
T |
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| Q |
124 |
cctagttgaaattatatnnnnnnncagaattagcaaatccaaaacaaataacttgtatgataagaaagcattgaactaaactaccatgtagctcctattg |
223 |
Q |
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| T |
40697735 |
cctagttcaaattatataaaaaa-cagaattagcaaatccaaaacaaataacttgtatgataagaaagcattaaactaaactaccatgtagctcctattg |
40697833 |
T |
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| Q |
224 |
taccagtcaccaattaaaagatcaaactccgcttccggttttggaaaaggaacacttatcactgctcggttgttaactcgaatcggaccaaaccctccac |
323 |
Q |
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| T |
40697834 |
taccagtcaccaattaaaagatcaaactccgcttccggttttggaaaaggaacacttatcactgcgcgattgttaactcgaatcggaccaaaccctccac |
40697933 |
T |
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| Q |
324 |
cggctttaaggaaattgatggaagggaaatagaataatgtacc |
366 |
Q |
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| T |
40697934 |
cggctttaaggaaattgatggaagggaaatagaagaatgtacc |
40697976 |
T |
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