View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8175_high_36 (Length: 337)
Name: NF8175_high_36
Description: NF8175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8175_high_36 |
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| [»] chr7 (1 HSPs) |
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| [»] scaffold0491 (1 HSPs) |
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| [»] chr8 (4 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 260; Significance: 1e-145; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 1 - 337
Target Start/End: Complemental strand, 1110697 - 1110360
Alignment:
| Q |
1 |
gtgggttttaggccttctgccatcgacaacactgatttgattggnnnnnnnnnn-cactatattgtgatccgtgattgacaacagtagtttatattggac |
99 |
Q |
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| T |
1110697 |
gtgggtttttggccttctgccattgacagcactgatttgattgaagaaaaaaaaacactatattgtgatccatgattgacaacagtagtttatattggac |
1110598 |
T |
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| Q |
100 |
atttgtactttctcgtttgatgcaatagtaatatattcaacttatagcattcactgctcttatgatgtatgtattggacttcttagtacgtatatcagcc |
199 |
Q |
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| T |
1110597 |
atttgtacttgctcgtttgatgcaatagtaatatattcaacttatagcattcactgctcttatgatgtatgtattggacttcttggtacgtatatcagcc |
1110498 |
T |
|
| Q |
200 |
ttgtcaaatagcaagtgcaacgttgcgaaatttgaacaaattgctattgtttcagggtttgctatttagttctaagtgttgtcaaatagcaactataaca |
299 |
Q |
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| T |
1110497 |
ttgtcaaatagcaagtgcaacgttgcgaaatttgaacaaattgctattgtttcgggatatgctatttagttctaagtgttgtcaaatagcaactataaca |
1110398 |
T |
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| Q |
300 |
gcgacgtgccactatagcatagaggaatttaaaggttt |
337 |
Q |
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| T |
1110397 |
gcgacgtgccactatagcatagaggaatttaaaggttt |
1110360 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0491 (Bit Score: 75; Significance: 2e-34; HSPs: 1)
Name: scaffold0491
Description:
Target: scaffold0491; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 74 - 337
Target Start/End: Original strand, 4241 - 4500
Alignment:
| Q |
74 |
attgacaacagtagtttatattggacatttgtactttctcgtttgatgcaatagtaatatattcaacttatagcattcactgctctt-atgatgtatgta |
172 |
Q |
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| T |
4241 |
attgacaacagtggtctatattgcacacttgtacttgctagtttaaaacaatagtagtatactcaactttaagcattcactgctcttgatgttgtctgta |
4340 |
T |
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| Q |
173 |
ttggacttcttagtacg-tatatcagccttgtcaaatagcaagtgcaacgttgcgaaatttgaacaaattgctattgtttcagggtttgctatttagttc |
271 |
Q |
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| T |
4341 |
cttgacttctcaatatggtatatcggtgttgtcaaatagcaat------gttccgaaatttgaacaaattgctattgtttcgggatatgctatttagttc |
4434 |
T |
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| Q |
272 |
taagtgttgtcaaatagcaactataacagcgacgtgccactatagcatagaggaatttaaaggttt |
337 |
Q |
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| T |
4435 |
taagtgtggccaaatgtcaactataacggcgacataccactatagcgttgtggaatttaaaggttt |
4500 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 75; Significance: 2e-34; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 74 - 337
Target Start/End: Original strand, 18737542 - 18737801
Alignment:
| Q |
74 |
attgacaacagtagtttatattggacatttgtactttctcgtttgatgcaatagtaatatattcaacttatagcattcactgctctt-atgatgtatgta |
172 |
Q |
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| T |
18737542 |
attgacaacagtggtctatattgcacacttgtacttgctagtttaaaacaatagtagtatactcaactttaagcattcactgctcttgatgttgtctgta |
18737641 |
T |
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| Q |
173 |
ttggacttcttagtacg-tatatcagccttgtcaaatagcaagtgcaacgttgcgaaatttgaacaaattgctattgtttcagggtttgctatttagttc |
271 |
Q |
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| T |
18737642 |
cttgacttctcaatatggtatatcggtgttgtcaaatagcaat------gttccgaaatttgaacaaattgctattgtttcgggatatgctatttagttc |
18737735 |
T |
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| Q |
272 |
taagtgttgtcaaatagcaactataacagcgacgtgccactatagcatagaggaatttaaaggttt |
337 |
Q |
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| T |
18737736 |
taagtgtggccaaatgtcaactataacggcgacataccactatagcgttgtggaatttaaaggttt |
18737801 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 74 - 337
Target Start/End: Original strand, 18747400 - 18747659
Alignment:
| Q |
74 |
attgacaacagtagtttatattggacatttgtactttctcgtttgatgcaatagtaatatattcaacttatagcattcactgctctt-atgatgtatgta |
172 |
Q |
| |
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|||||||||||| || ||||||| ||| |||||||| || |||| | |||||||| |||| ||||||| |||||||||||||||| ||| ||| |||| |
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| T |
18747400 |
attgacaacagtggtctatattgcacacttgtacttgctagtttaaaacaatagtagtatactcaactttaagcattcactgctcttgatgttgtctgta |
18747499 |
T |
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| Q |
173 |
ttggacttcttagtacg-tatatcagccttgtcaaatagcaagtgcaacgttgcgaaatttgaacaaattgctattgtttcagggtttgctatttagttc |
271 |
Q |
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| T |
18747500 |
cttgacttctcagtatggtatatcggtgttgtcaaatagcaat------gttccgaaatttgaacaaattgctatagtttcgggatatgctatttagttc |
18747593 |
T |
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| Q |
272 |
taagtgttgtcaaatagcaactataacagcgacgtgccactatagcatagaggaatttaaaggttt |
337 |
Q |
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| T |
18747594 |
taagtgtggccaaatgtcaactataacggcgacataccactatagcgttgtggaatttaaaggttt |
18747659 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 74 - 337
Target Start/End: Original strand, 18742436 - 18742695
Alignment:
| Q |
74 |
attgacaacagtagtttatattggacatttgtactttctcgtttgatgcaatagtaatatattcaacttatagcattcactgctctt-atgatgtatgta |
172 |
Q |
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|||||||||||| || ||||||| ||| |||||||| || |||| | |||||||| |||| ||||||| |||||||||||||||| ||| ||| |||| |
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| T |
18742436 |
attgacaacagtggtctatattgcacacttgtacttgctagtttaaaacaatagtagtatactcaactttaagcattcactgctcttgatgttgtctgta |
18742535 |
T |
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| Q |
173 |
ttggacttcttagtacg-tatatcagccttgtcaaatagcaagtgcaacgttgcgaaatttgaacaaattgctattgtttcagggtttgctatttagttc |
271 |
Q |
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| T |
18742536 |
cttgacttctcagtatggtatatcggtgttgtcaaatagcaat------gttcccaaatttgaacaaattgctatagtttcgggatatgctatttagttc |
18742629 |
T |
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| Q |
272 |
taagtgttgtcaaatagcaactataacagcgacgtgccactatagcatagaggaatttaaaggttt |
337 |
Q |
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||||||| | ||||| |||||||||| ||||| | |||||||||| | | ||||||||||||||| |
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| T |
18742630 |
taagtgtggccaaatgtcaactataacggcgacataccactatagcgttgtggaatttaaaggttt |
18742695 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 6 - 43
Target Start/End: Original strand, 18737475 - 18737512
Alignment:
| Q |
6 |
ttttaggccttctgccatcgacaacactgatttgattg |
43 |
Q |
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|||| |||||||||||||||||||||||||||| |||| |
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| T |
18737475 |
tttttggccttctgccatcgacaacactgattttattg |
18737512 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 236 - 291
Target Start/End: Original strand, 35199588 - 35199643
Alignment:
| Q |
236 |
caaattgctattgtttcagggtttgctatttagttctaagtgttgtcaaatagcaa |
291 |
Q |
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| T |
35199588 |
caaattgctattgtttcacgatacgcgatttagttcaaagtgttgtcaaatagcaa |
35199643 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 226 - 296
Target Start/End: Original strand, 2732934 - 2733004
Alignment:
| Q |
226 |
gaaatttgaacaaattgctattgtttcagggtttgctatttagttctaagtgttgtcaaatagcaactata |
296 |
Q |
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| T |
2732934 |
gaaatttgaacaaatcgctattgttttgcgatatgctatttagtacaaaatgttgtcaaatagcagctata |
2733004 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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