View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8175_high_4 (Length: 601)
Name: NF8175_high_4
Description: NF8175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8175_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 242; Significance: 1e-134; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 213 - 526
Target Start/End: Complemental strand, 2647261 - 2646948
Alignment:
| Q |
213 |
gaaatcattttgttgtggtaaatgtgagtaacaagtctaacgatagaagaaaaactgaatgttgagtaatatatatgtgactcatatacttaatgtcgta |
312 |
Q |
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| T |
2647261 |
gaaatcattttgttgtggtaaatgtgagtaacaagtctcacgatagaagaaaaaatgaatgttgagtaatatatatgtgattcgtatatttaatgtcgta |
2647162 |
T |
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| Q |
313 |
agtctttgggtttagatatggtgtccaacttacttttgtgattgctcttagatctaatgtgatgatctctggactctctctaatgacccaactttggtat |
412 |
Q |
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| T |
2647161 |
agtctttgggtttagatatggtgtccaactcacttttgtgattgctcgtaggtctaatgtgatgatctccggactctccctaatggcccaactttggtat |
2647062 |
T |
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| Q |
413 |
cataatgtgtgttttattgagtgtaacgaaaatggcggtacaagtgtatgtaaatgaaaaaagtttttgctttcataataaagtaatggaccttcatttg |
512 |
Q |
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| T |
2647061 |
cagaatgtgtgttttgttgagtgcaacggaaatagcggtacaagtgtatgtaaatgaaaaaagtttttgctttcataataaagtaatggaccttcatttg |
2646962 |
T |
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| Q |
513 |
agggagatattatt |
526 |
Q |
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||| ||| |||||| |
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| T |
2646961 |
aggaagagattatt |
2646948 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 13 - 176
Target Start/End: Complemental strand, 2647460 - 2647297
Alignment:
| Q |
13 |
attatacttacaccttccttatataagatcctacatattttatcttttcattaatatatgaacctagagacaaacctcaaagaaatcttaaattgacata |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2647460 |
attatacttacaccttccttatataagatcctacatattttatcttttcattaatatatgaacctagagacaaacctcaaagaaatcttaaattgacata |
2647361 |
T |
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| Q |
113 |
gtctattaggcatgagaaaagatcatacatctcacaattaaaatagcatctcgagatctagacc |
176 |
Q |
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| T |
2647360 |
gtctattaggcatgagaaaagatcatacatctcacaattaaaatagcatctcgagatctagacc |
2647297 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 529 - 601
Target Start/End: Complemental strand, 2646914 - 2646842
Alignment:
| Q |
529 |
tagataaacactgcagtgatccattttcccatagaccaaattaattagttaaaaagaatactttgaattttaa |
601 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
2646914 |
tagataaacactgcagtgatccattttcccatggaccaaattaattagttaaaaagaatactttgaattttaa |
2646842 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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