View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8175_high_41 (Length: 320)
Name: NF8175_high_41
Description: NF8175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8175_high_41 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 35 - 302
Target Start/End: Complemental strand, 35503969 - 35503702
Alignment:
| Q |
35 |
tactgggagcatgaaaaatattgtgtttgcattactggatttaattctgattatagtataaccgttttatgtgaattgtcaaaatgttaaagattatagc |
134 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35503969 |
tactgggagcatgaaaaatattgtgtttgcattactggatttaattctgattatagtataaccgttttatgtgaattgtcaaaatgttaaagattatagc |
35503870 |
T |
|
| Q |
135 |
ataaccgttttatgttagttgtcaaaatgttaaaaatagtgagtgaattactctctccgctaagggaagttaaaatttaaattacacttctctcatctct |
234 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
35503869 |
ataaccgttttatgttagttgtcaaaatgttaaaaatagtgagtgaattactctctccgctaagagaagttaaaatttaaattacacttctctcatctct |
35503770 |
T |
|
| Q |
235 |
tatgttaaaagatataatcatttcctttgagaagtaaaaactagagtatattatgctcctattaagag |
302 |
Q |
| |
|
||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35503769 |
tatattaaaagatatactcatttcctttgagaagtaaaaactagagtatattatgctcctattaagag |
35503702 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 209 - 252
Target Start/End: Complemental strand, 5345180 - 5345137
Alignment:
| Q |
209 |
atttaaattacacttctctcatctcttatgttaaaagatataat |
252 |
Q |
| |
|
|||| ||||||||| ||||||||||||||||||||| ||||||| |
|
|
| T |
5345180 |
atttgaattacactcctctcatctcttatgttaaaatatataat |
5345137 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 214 - 250
Target Start/End: Original strand, 36687283 - 36687319
Alignment:
| Q |
214 |
aattacacttctctcatctcttatgttaaaagatata |
250 |
Q |
| |
|
||||||||||||||| ||||||||||||||| ||||| |
|
|
| T |
36687283 |
aattacacttctctcctctcttatgttaaaatatata |
36687319 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University