View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8175_high_42 (Length: 317)
Name: NF8175_high_42
Description: NF8175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8175_high_42 |
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Alignment Details
Target: chr5 (Bit Score: 107; Significance: 1e-53; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 14 - 140
Target Start/End: Original strand, 26319924 - 26320050
Alignment:
| Q |
14 |
taatactcttcgtatttagctttaagtggagtcccatagtttttccagtgatgtatggtcgtgttaaaaagggtcaggagccggcccaacactaaatgag |
113 |
Q |
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| T |
26319924 |
taatactcttcgtatttagctttaagtggagtcccatagttcttccagtgatgtatggtcctgttaaaaagggtcaggagccggcccaacactaaatgag |
26320023 |
T |
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| Q |
114 |
gcttaacgcaaactccaatgtgagacc |
140 |
Q |
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| T |
26320024 |
gcctaaagcaaactccaatgtaagacc |
26320050 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 218 - 299
Target Start/End: Original strand, 26320127 - 26320208
Alignment:
| Q |
218 |
cacaatcaatttgccttaacatgtctttttcaattgagattaaggctaatccatttaatctttgttgagacattgttgatct |
299 |
Q |
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| T |
26320127 |
cacaatcaatttgccttaacatgtctttttcaattgagattaaggctaatccatttaatctttgttgagacattgttgatct |
26320208 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 25 - 87
Target Start/End: Original strand, 26312364 - 26312426
Alignment:
| Q |
25 |
gtatttagctttaagtggagtcccatagtttttccagtgatgtatggtcgtgttaaaaagggt |
87 |
Q |
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| T |
26312364 |
gtatttagcttcaaatggagtcacatagcttttccagtgatgtatggtcctgttaaagagggt |
26312426 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 233 - 299
Target Start/End: Original strand, 39435467 - 39435533
Alignment:
| Q |
233 |
ttaacatgtctttttcaattgagattaaggctaatccatttaatctttgttgagacattgttgatct |
299 |
Q |
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| T |
39435467 |
ttaacatgtctttctcaatcgatattaaagccaaaccatttaatattttttgagacattgttgatct |
39435533 |
T |
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