View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8175_high_44 (Length: 303)

Name: NF8175_high_44
Description: NF8175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8175_high_44
NF8175_high_44
[»] chr7 (1 HSPs)
chr7 (5-287)||(49008325-49008607)
[»] chr2 (1 HSPs)
chr2 (11-285)||(21686791-21687065)
[»] chr8 (4 HSPs)
chr8 (11-285)||(8963182-8963456)
chr8 (11-229)||(8974634-8974852)
chr8 (11-95)||(8945628-8945712)
chr8 (22-123)||(8958330-8958431)
[»] chr1 (1 HSPs)
chr1 (22-229)||(34962422-34962626)


Alignment Details
Target: chr7 (Bit Score: 283; Significance: 1e-158; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 5 - 287
Target Start/End: Complemental strand, 49008607 - 49008325
Alignment:
Q  5 ttctgagtgaagtttaatgcacatagaagattcacataatcttgttttcctgcatcataaacaagtccaggatcaagtgctctattgggattgatatgtc 104  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49008607 ttctgagtgaagtttaatgcacatagaagattcacataatcttgttttcctgcatcataaacaagtccaggatcaagtgctctattgggattgatatgtc 49008508  T
Q  105 cggctcccaaagctaaaggtgaagctggtctgtaaccattaccaatgtctgtgatgagttcttttgtgttgtctaacatgtctgatgttgtcatcatagc 204  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49008507 cggctcccaaagctaaaggtgaagctggtctgtaaccattaccaatgtctgtgatgagttcttttgtgttgtctaacatgtctgatgttgtcatcatagc 49008408  T
Q  205 cgatctaatggctgctgggctccaacaagggtgcatttcttttaaaagtgctgctacacctgcaacgtgtggacatgacattg 287  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49008407 cgatctaatggctgctgggctccaacaagggtgcatttcttttaaaagtgctgctacacctgcaacgtgtggacatgacattg 49008325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 79; Significance: 6e-37; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 11 - 285
Target Start/End: Original strand, 21686791 - 21687065
Alignment:
Q  11 gtgaagtttaatgcacatagaagattcacataatcttgttttcctgcatcataaacaagtccaggatcaagtgctctattgggattgatatgtccggctc 110  Q
    |||||||| | |||||| |||||||| | ||||||||||   ||   |||||||||||| |||||||||||||||||||| || || ||||| || ||||    
T  21686791 gtgaagttaagtgcacaaagaagattaatataatcttgtacaccgatatcataaacaagaccaggatcaagtgctctattagggttaatatgaccagctc 21686890  T
Q  111 ccaaagctaaaggtgaagctggtctgtaaccattaccaatgtctgtgatgagttcttttgtgttgtctaacatgtctgatgttgtcatcatagccgatct 210  Q
    |||| || ||||| |  |||| ||||| |||||| ||||||||| ||||  |||| || || |||||||| ||||||||||||||||| || ||||| ||    
T  21686891 ccaatgcaaaaggagttgctgctctgttaccatttccaatgtctttgatatgttccttagtattgtctaatatgtctgatgttgtcataattgccgacct 21686990  T
Q  211 aatggctgctgggctccaacaagggtgcatttcttttaaaagtgctgctacacctgcaacgtgtggacatgacat 285  Q
    ||| | ||  |||||||||| |  |||     |||||||||| ||||||||||||||||| ||||||||||||||    
T  21686991 aatagatgacgggctccaaccattgtgtgccccttttaaaagcgctgctacacctgcaacatgtggacatgacat 21687065  T

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Target: chr8 (Bit Score: 63; Significance: 2e-27; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 11 - 285
Target Start/End: Complemental strand, 8963456 - 8963182
Alignment:
Q  11 gtgaagtttaatgcacatagaagattcacataatcttgttttcctgcatcataaacaagtccaggatcaagtgctctattgggattgatatgtccggctc 110  Q
    |||||||| | |||||| |||| ||| ||||||||||||   ||   |||||||||||| ||||| ||||||||| |||| || |||||||| || ||||    
T  8963456 gtgaagttaagtgcacaaagaaaattaacataatcttgtacaccaatatcataaacaagaccagggtcaagtgctttattagggttgatatgaccagctc 8963357  T
Q  111 ccaaagctaaaggtgaagctggtctgtaaccattaccaatgtctgtgatgagttcttttgtgttgtctaacatgtctgatgttgtcatcatagccgatct 210  Q
    |||| || |||||||  |||| | ||| | | || ||||||||| |||| ||||| || ||||| || || |||||||||||||||||||| ||||| ||    
T  8963356 ccaatgcaaaaggtgttgctgctatgttatcttttccaatgtctttgataagttccttagtgttatcaaatatgtctgatgttgtcatcattgccgacct 8963257  T
Q  211 aatggctgctgggctccaacaagggtgcatttcttttaaaagtgctgctacacctgcaacgtgtggacatgacat 285  Q
    ||| ||||  |||||||||  ||  ||   | |||| ||||||||| ||||||| ||||| || |||||||||||    
T  8963256 aatagctgtcgggctccaatcagcatgtgctcctttcaaaagtgctcctacaccggcaacatgaggacatgacat 8963182  T

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Target: chr8; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 11 - 229
Target Start/End: Complemental strand, 8974852 - 8974634
Alignment:
Q  11 gtgaagtttaatgcacatagaagattcacataatcttgttttcctgcatcataaacaagtccaggatcaagtgctctattgggattgatatgtccggctc 110  Q
    |||||||| | |||||| |||||||| ||||||||||||   ||  ||||||||||||||||||| | ||||||| | ||||| |||||||| || ||||    
T  8974852 gtgaagttgagtgcacaaagaagattgacataatcttgtacaccaacatcataaacaagtccagggttaagtgctttgttggggttgatatgaccagctc 8974753  T
Q  111 ccaaagctaaaggtgaagctggtctgtaaccattaccaatgtctgtgatgagttcttttgtgttgtctaacatgtctgatgttgtcatcatagccgatct 210  Q
    |    || |||||||  |||    ||| ||| || ||||||||| | |||||||| || || || || || |||||||||||||||||||| || || ||    
T  8974752 cttgtgcaaaaggtgttgctacgttgttaccttttccaatgtcttttatgagttccttagtattatcaaatatgtctgatgttgtcatcattgctgacct 8974653  T
Q  211 aatggctgctgggctccaa 229  Q
    ||| ||||| |||||||||    
T  8974652 aatagctgcagggctccaa 8974634  T

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Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 11 - 95
Target Start/End: Original strand, 8945628 - 8945712
Alignment:
Q  11 gtgaagtttaatgcacatagaagattcacataatcttgttttcctgcatcataaacaagtccaggatcaagtgctctattgggat 95  Q
    |||||||| | |||||| |||||||| ||||||||||||   ||  ||||||||||||| ||||| |||||||||||||||||||    
T  8945628 gtgaagttaagtgcacaaagaagattaacataatcttgtacaccaacatcataaacaagaccagggtcaagtgctctattgggat 8945712  T

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Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 22 - 123
Target Start/End: Complemental strand, 8958431 - 8958330
Alignment:
Q  22 tgcacatagaagattcacataatcttgttttcctgcatcataaacaagtccaggatcaagtgctctattgggattgatatgtccggctcccaaagctaaa 121  Q
    |||||| |||||||| ||||||||||||   ||  ||||||||| ||| ||||| |||||||||||||| ||||| | ||| || |||||||| || |||    
T  8958431 tgcacaaagaagattaacataatcttgtacaccaacatcataaataagaccagggtcaagtgctctatttggattaacatgaccagctcccaatgcaaaa 8958332  T
Q  122 gg 123  Q
    ||    
T  8958331 gg 8958330  T

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Target: chr1 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 22 - 229
Target Start/End: Original strand, 34962422 - 34962626
Alignment:
Q  22 tgcacatagaagattcacataatcttgttttcctgcatcataaacaagtccaggatcaagtgctctattgggattgatatgtccggctcccaaagctaaa 121  Q
    |||||| |||||||||||||||||||||   ||  ||||||||||||| ||||| |||||||||||||| ||||| | ||| || |||||||| || |||    
T  34962422 tgcacaaagaagattcacataatcttgtacaccaacatcataaacaagaccagggtcaagtgctctattaggattaacatgaccagctcccaatgcaaaa 34962521  T
Q  122 ggtgaagctggtctgtaaccattaccaatgtctgtgatgagttcttttgtgttgtctaacatgtctgatgttgtcatcatagccgatctaatggctgctg 221  Q
    ||||  |||| | |||   |  | ||||||||| ||||  |||| || |  || || || ||||||||||||||||| || ||||| | ||| |||||||    
T  34962522 ggtgttgctgctttgt---ctgttccaatgtctttgatttgttccttagaattatcaaatatgtctgatgttgtcattattgccgaccgaattgctgctg 34962618  T
Q  222 ggctccaa 229  Q
    ||||||||    
T  34962619 ggctccaa 34962626  T

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