View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8175_high_52 (Length: 272)
Name: NF8175_high_52
Description: NF8175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8175_high_52 |
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Alignment Details
Target: chr1 (Bit Score: 223; Significance: 1e-123; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 14 - 259
Target Start/End: Original strand, 52937655 - 52937901
Alignment:
| Q |
14 |
agacgtgtgcttggtgcgcctggtaagtctgattgttaaatctg-atagtttcttttaaggataaatttacttatttgtctggatagctaatctgaatat |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
52937655 |
agacgtgtgcttggtgcgcctggtaagtctgattgttaaatctgtatagttttttttaaggttaaatttacttatttgtctggatagctaatctgaatat |
52937754 |
T |
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| Q |
113 |
atcacttatttgttaatggccggttaatatagagagcgaaacttatgcatcagcattgtactacatgcttaattcatattgcaaacctttgtgtaggaag |
212 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52937755 |
atcacttatttgttaattgccggttaatatagagagcgaaacttatgcatcagcattgtactacatgcttaattcatattgcaaacctttgtgtaggaag |
52937854 |
T |
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| Q |
213 |
attagatactagccagcatgaattacactatatttcatgactaatat |
259 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
52937855 |
attagatactagccagcctgaattacactatatttcatgactaatat |
52937901 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 14 - 259
Target Start/End: Original strand, 52945290 - 52945536
Alignment:
| Q |
14 |
agacgtgtgcttggtgcgcctggtaagtctgattgttaaatctg-atagtttcttttaaggataaatttacttatttgtctggatagctaatctgaatat |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
52945290 |
agacgtgtgcttggtgcgcctggtaagtctgattgttaaatctgtatagttttttttaaggttaaatttacttatttgtctggatagctaatctgaatac |
52945389 |
T |
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| Q |
113 |
atcacttatttgttaatggccggttaatatagagagcgaaacttatgcatcagcattgtactacatgcttaattcatattgcaaacctttgtgtaggaag |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52945390 |
atcacttatttgttaatggccggttaatatagagagcgaaacttatgcatcagcattgtactacatgcttaattcatattgcaaacctttgtgtaggaag |
52945489 |
T |
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| Q |
213 |
attagatactagccagcatgaattacactatatttcatgactaatat |
259 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
52945490 |
attagatactagccagcctgaattacactatatttcatgactaatat |
52945536 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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