View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8175_high_54 (Length: 267)
Name: NF8175_high_54
Description: NF8175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8175_high_54 |
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Alignment Details
Target: chr5 (Bit Score: 236; Significance: 1e-130; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 248
Target Start/End: Original strand, 34256835 - 34257082
Alignment:
| Q |
1 |
taggacagagtggatataatatattcctcaagcaggaatgtgctcgacttaaagctaatcatccggacgtaggtggaagaaaaatcatagacatggctat |
100 |
Q |
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| T |
34256835 |
taggacagagtggatataatatattcctcaagcaggaatgtgctcgacttaaagctaatcatccggacgtaggtggaagaaaaatcatagacatggctat |
34256934 |
T |
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| Q |
101 |
tgatgcttggaataagttgtcagacaatgagaaacgggtatagtaaatgaatttgacataataatatcgattaaaagtcgaaagtttatatttttgcaac |
200 |
Q |
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| T |
34256935 |
tgatgcttggaataagttgtcagacaatgagaaacgggtatagtaaatgaatttgagataataatatcgattaaaagtcgaaagtttatctttttgcaac |
34257034 |
T |
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| Q |
201 |
aaatgatgtttgaaatttgccatttctaattacttttcatgtagccat |
248 |
Q |
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| T |
34257035 |
aaatgatgtttgaaattcgccatttctaattacttttcatgtagccat |
34257082 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 144 - 248
Target Start/End: Original strand, 34257310 - 34257418
Alignment:
| Q |
144 |
taaatgaatttgacataataatatcgattaaaag---tcgaaag-tttatatttttgcaacaaatgatgtttgaaatttgccatttctaattacttttca |
239 |
Q |
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| T |
34257310 |
taaatgaaattgacataataatatcgaatagaagaagttgaaagatttatatttttgccataaatgatgtttgaaatttgccacttctaattacatttca |
34257409 |
T |
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| Q |
240 |
tgtagccat |
248 |
Q |
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||||||||| |
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| T |
34257410 |
tgtagccat |
34257418 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 21 - 199
Target Start/End: Original strand, 41553439 - 41553613
Alignment:
| Q |
21 |
atattcctcaagcaggaatgtgctcgacttaaagctaatcatccggacgtaggtggaagaaaaatcatagacatggctattgatgcttggaataagttgt |
120 |
Q |
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|||||||||||| |||||||||||||||| |||||| |||||| |||| | |||| |||||| | |||||||||||||||||||| || ||| |
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| T |
41553439 |
atattcctcaagaaggaatgtgctcgactgaaagctgatcatcgggacattggtgtcagaaaac------aaatggctattgatgcttggaagaaaatgt |
41553532 |
T |
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| Q |
121 |
cagacaatgagaaacgggtatagta-aatgaatttgacataataatatcgattaaaagtcgaaag-tttatatttttgcaa |
199 |
Q |
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|||||| ||| ||| |||| | || |||||| |||||||||||||||| ||||||||||||||| |||||| |||||||| |
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| T |
41553533 |
cagacattgataaaaaggtacaatataatgaaattgacataataatatctattaaaagtcgaaagatttatagttttgcaa |
41553613 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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