View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8175_high_55 (Length: 263)
Name: NF8175_high_55
Description: NF8175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8175_high_55 |
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Alignment Details
Target: chr3 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 18 - 250
Target Start/End: Complemental strand, 47812655 - 47812423
Alignment:
| Q |
18 |
gttttgtgtttaataagtcaaaaagagcactcactttgaatagtgaacctctgcctctactcaataagtatgctgcaattattcttagccttaggactca |
117 |
Q |
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| T |
47812655 |
gttttgtgtttaataagtcaaaaagagcactcactttgaacagtgaacctctgcctctactcaataagtatgctgcaattattcttagccttaggactca |
47812556 |
T |
|
| Q |
118 |
atgaacggcttataatgaggataatatgaagattttttatgctcctactccatgtttgagtagccttctgttagcatatgtatcgggaaggactttcctt |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47812555 |
atgaacggcttataatgaggataatatgaagattttttatgctcctactccatgtttgagtagccttctgttagcatatgtatcgggaaggactttcctt |
47812456 |
T |
|
| Q |
218 |
aggacttaattttccctttttcttgttctgttc |
250 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
47812455 |
aggacttaattttccctttttcttgttctgttc |
47812423 |
T |
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