View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8175_high_56 (Length: 262)
Name: NF8175_high_56
Description: NF8175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8175_high_56 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 225; Significance: 1e-124; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 19 - 251
Target Start/End: Complemental strand, 5942727 - 5942495
Alignment:
| Q |
19 |
acaaaaaatctccaataaccttaaaaccatctttctccaaacacaacctcaacttctccactttctccttcaccacttcatcacttgccactcctccaaa |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5942727 |
acaaaaaatctccaataaccttaaaaccatctttctccaaacacaacctcaacttctccactttctccttcaccacttcatcacttgccactcctccaaa |
5942628 |
T |
|
| Q |
119 |
agtcaccaccccatatttcttcccaccttcttctcttatcacaaccctctcatcaataggcttaggtacttcctctactttttcatacatagaaggcaaa |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
5942627 |
agtcaccaccccatatttcttcccaccttcttctcttatcacaaccctctcatcaataggcttaggtacttcctctacttttaaatacatagaaggcaaa |
5942528 |
T |
|
| Q |
219 |
gtaaactgcatagtcaccatcttgttcttctca |
251 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
5942527 |
gtaaactgcatagtcaccatcttgttcttctca |
5942495 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 21 - 252
Target Start/End: Complemental strand, 5951529 - 5951298
Alignment:
| Q |
21 |
aaaaaatctccaataaccttaaaaccatctttctccaaacacaacctcaacttctccactttctccttcaccacttcatcacttgccactcctccaaaag |
120 |
Q |
| |
|
|||||||| ||||||||||||||||||||| ||||||||| || ||||||||||||||| ||||||||||||||||||||||| ||||| || | ||| |
|
|
| T |
5951529 |
aaaaaatccccaataaccttaaaaccatctctctccaaactcagcctcaacttctccaccttctccttcaccacttcatcactagccacaccactaaact |
5951430 |
T |
|
| Q |
121 |
tcaccaccccatatttcttcccaccttcttctcttatcacaaccctctcatcaataggcttaggtacttcctctactttttcatacatagaaggcaaagt |
220 |
Q |
| |
|
||||||| ||||||||| || ||||||| ||||||||||||||||| |||||| | ||||||||| |||| ||| |||||||||| |||| |||||| | |
|
|
| T |
5951429 |
tcaccactccatatttcctctcaccttcctctcttatcacaaccctttcatcagttggcttaggtgcttcttctgctttttcataactagatggcaaaat |
5951330 |
T |
|
| Q |
221 |
aaactgcatagtcaccatcttgttcttctcac |
252 |
Q |
| |
|
||||||||||||||||||||||||| |||||| |
|
|
| T |
5951329 |
aaactgcatagtcaccatcttgttcctctcac |
5951298 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University