View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8175_high_61 (Length: 255)
Name: NF8175_high_61
Description: NF8175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8175_high_61 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 97; Significance: 9e-48; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 83 - 248
Target Start/End: Original strand, 48717903 - 48718068
Alignment:
| Q |
83 |
acaaaatgtgtacaaaatggagcggtcaacatatgattttccatttggcatctactaaaccaatgtttgttctttactacagaannnnnnnn--gtttta |
180 |
Q |
| |
|
||||| ||||||||||||| |||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||| |||| |||||| |
|
|
| T |
48717903 |
acaaagtgtgtacaaaatgaagcggtcaacatat-atttcccatttggcatctactaaaccaatgtttgttctttactaaagaattttttttttgtttta |
48718001 |
T |
|
| Q |
181 |
gtttggattaacatctagcccataaaagcaccttaattaaaataaatttataaacacattcatctcac |
248 |
Q |
| |
|
|||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48718002 |
gtttggattaacatctggcccataaa-gcaccttaattaaaataaatttataaacacattcatctcac |
48718068 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 29 - 72
Target Start/End: Original strand, 48717030 - 48717073
Alignment:
| Q |
29 |
agaagaaagccatttgtaagattgtggtcggtcaatgtcatcaa |
72 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||| ||||||| |
|
|
| T |
48717030 |
agaagaaagccacttgtaagattgtggtcggtcaatatcatcaa |
48717073 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University