View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8175_high_73 (Length: 240)
Name: NF8175_high_73
Description: NF8175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8175_high_73 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 18 - 240
Target Start/End: Original strand, 23271224 - 23271446
Alignment:
| Q |
18 |
ctatatttctttgcagcatatatatgtttttctttttcaatcttccgtagatttagagcttaacaatctcaggaatatgaactggatagcgatcaatgca |
117 |
Q |
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| T |
23271224 |
ctatatttctttgcagcatatatatgtttttctttttcaatcttccgtagatttagagcttaacaatctcaggaatatgaactggatagcgatcaatgca |
23271323 |
T |
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| Q |
118 |
atcttcccaaggtccattaacaggtgttttaatgcttctattacatttccacacagcactattgcatttaaatccacttccaaaagctatttgccatact |
217 |
Q |
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| T |
23271324 |
atcttcccaaggtccattaacaggtgttttaatgcttctattacatttccacacagcactattgcatttaaatccacttccaaaagctatttgccatact |
23271423 |
T |
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| Q |
218 |
ctatcacctctcttcatccttcc |
240 |
Q |
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| T |
23271424 |
ctatcacctctcttcatccttcc |
23271446 |
T |
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Target: chr1 (Bit Score: 95; Significance: 1e-46; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 71 - 237
Target Start/End: Original strand, 50087016 - 50087182
Alignment:
| Q |
71 |
tagagcttaacaatctcaggaatatgaactggatagcgatcaatgcaatcttcccaaggtccattaacaggtgttttaatgcttctattacatttccaca |
170 |
Q |
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||||| |||||||| ||||||||||||||||| || ||||||||||||||| ||||||||||| || |||||| ||||||||||| ||||||||||| | |
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| T |
50087016 |
tagagtttaacaatttcaggaatatgaactgggtaacgatcaatgcaatctgtccaaggtccatcaataggtgtcttaatgcttctgttacatttccaaa |
50087115 |
T |
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| Q |
171 |
cagcactattgcatttaaatccacttccaaaagctatttgccatactctatcacctctcttcatcct |
237 |
Q |
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| T |
50087116 |
cagcactattgcatttaaatccactgccaaatgctatctgccataccctgtctcctttcttcatcct |
50087182 |
T |
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