View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8175_high_82 (Length: 216)
Name: NF8175_high_82
Description: NF8175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8175_high_82 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 175; Significance: 2e-94; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 18 - 196
Target Start/End: Complemental strand, 24459997 - 24459819
Alignment:
| Q |
18 |
agtgggttgctttatagtttttgttatcaaaacttccctctggtacctgtcaaagaaaagcgattattttctttgagtaatcaaatcaaaacacataatg |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24459997 |
agtgggttgctttatagtttttgttatcaaaacttccctctggtacctgtcaaagaaaagcgattattttctttgagtaatcaaatcaaaacacataatg |
24459898 |
T |
|
| Q |
118 |
cttgagagtgttgtcagggtttaattgtgtctgtaatatcacatcatatattgtgtataaacaattgcacttgtttcat |
196 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
24459897 |
cttgagagtgttgtcagggtttaattgtgtctgtaatatcacatcatatattgtgtataaacaattacacttgtttcat |
24459819 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 18 - 196
Target Start/End: Complemental strand, 24478162 - 24477984
Alignment:
| Q |
18 |
agtgggttgctttatagtttttgttatcaaaacttccctctggtacctgtcaaagaaaagcgattattttctttgagtaatcaaatcaaaacacataatg |
117 |
Q |
| |
|
||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||| |
|
|
| T |
24478162 |
agtgggttgctgtatagttttcgttatcaaaacttccctctggtacctgtcaaagaaaagcgattattttctttgattaagcaaatcaaaacacataatt |
24478063 |
T |
|
| Q |
118 |
cttgagagtgttgtcagggtttaattgtgtctgtaatatcacatcatatattgtgtataaacaattgcacttgtttcat |
196 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||| |
|
|
| T |
24478062 |
cttgagagtgttgtcagggtttaattgtgtctgtaatatcacatcatatattgtgtataaacaattacgcttgtttcat |
24477984 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University