View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8175_high_86 (Length: 203)
Name: NF8175_high_86
Description: NF8175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8175_high_86 |
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Alignment Details
Target: chr4 (Bit Score: 169; Significance: 8e-91; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 169; E-Value: 8e-91
Query Start/End: Original strand, 12 - 184
Target Start/End: Original strand, 34951636 - 34951808
Alignment:
| Q |
12 |
cagagacaaggagttgtgatgttggtgtaagagcatatccttctttggtttcatcaattttgacaattgcaaagaaatcaatgtgtgctaataagcgcat |
111 |
Q |
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| T |
34951636 |
cagagacaaggagttgtgatgttggtgtaagagcatatccttctttggtttcatcaattttgacaattgcaaagaaatcaatgtgtgctaataagcgcat |
34951735 |
T |
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| Q |
112 |
gagtcgacggacgcatgtttcttttgattgtggaaccttaagagctgaaatgagctcagaaagagtcatggca |
184 |
Q |
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| T |
34951736 |
gagtcgacggacgcatgtttcttttgattgtggaaccttaagagatgaaatgagctcagaaagagtcatggca |
34951808 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 13 - 183
Target Start/End: Original strand, 34947166 - 34947336
Alignment:
| Q |
13 |
agagacaaggagttgtgatgttggtgtaagagcatatccttctttggtttcatcaattttgacaattgcaaagaaatcaatgtgtgctaataagcgcatg |
112 |
Q |
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|||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
34947166 |
agagacaaggagttgtgatgttggagtaagagtatatccttctttggtttcatcaattttgacaattgcaaagaaatcaatgtgtgctaacaagcgcatt |
34947265 |
T |
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| Q |
113 |
agtcgacggacgcatgtttcttttgattgtggaaccttaagagctgaaatgagctcagaaagagtcatggc |
183 |
Q |
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| T |
34947266 |
agtcgaccgacgcatgtttcttttgattgtggaaccttaagagctgaaatgagctcagaaagagtaatggc |
34947336 |
T |
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