View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8175_high_9 (Length: 539)

Name: NF8175_high_9
Description: NF8175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8175_high_9
NF8175_high_9
[»] chr3 (13 HSPs)
chr3 (3-516)||(13932880-13933390)
chr3 (43-168)||(9801077-9801201)
chr3 (40-150)||(431327-431437)
chr3 (89-167)||(17143743-17143821)
chr3 (124-199)||(16704456-16704528)
chr3 (168-237)||(25496033-25496102)
chr3 (40-317)||(1770795-1771070)
chr3 (94-168)||(21342280-21342354)
chr3 (43-148)||(12516158-12516263)
chr3 (42-105)||(12051729-12051792)
chr3 (98-167)||(28715482-28715551)
chr3 (41-73)||(21649384-21649416)
chr3 (41-73)||(21652614-21652646)
[»] chr4 (8 HSPs)
chr4 (40-270)||(19643672-19643899)
chr4 (29-236)||(12683744-12683948)
chr4 (42-168)||(47253249-47253375)
chr4 (122-237)||(2674501-2674613)
chr4 (52-227)||(29157084-29157256)
chr4 (3-236)||(15742081-15742311)
chr4 (41-167)||(19809673-19809798)
chr4 (54-115)||(5518524-5518585)
[»] chr2 (13 HSPs)
chr2 (28-233)||(3586321-3586523)
chr2 (41-235)||(36267469-36267660)
chr2 (94-187)||(24499813-24499903)
chr2 (43-275)||(10923054-10923283)
chr2 (52-158)||(20120329-20120435)
chr2 (41-158)||(45714966-45715083)
chr2 (44-168)||(12127656-12127780)
chr2 (42-146)||(15825126-15825230)
chr2 (168-236)||(18772343-18772411)
chr2 (43-74)||(19919153-19919184)
chr2 (95-168)||(12168998-12169071)
chr2 (123-168)||(45258145-45258190)
chr2 (41-77)||(17671944-17671980)
[»] chr1 (11 HSPs)
chr1 (7-158)||(12177323-12177474)
chr1 (41-168)||(52565551-52565678)
chr1 (41-168)||(22414746-22414873)
chr1 (52-168)||(26977722-26977838)
chr1 (41-158)||(16030366-16030483)
chr1 (54-150)||(23280273-23280367)
chr1 (41-149)||(33101519-33101627)
chr1 (43-106)||(4601542-4601605)
chr1 (94-168)||(34273111-34273185)
chr1 (94-155)||(5671794-5671855)
chr1 (41-73)||(14255118-14255150)
[»] scaffold0291 (2 HSPs)
scaffold0291 (40-240)||(8505-8697)
scaffold0291 (129-270)||(15324-15462)
[»] chr8 (7 HSPs)
chr8 (42-155)||(18322915-18323028)
chr8 (82-167)||(6928084-6928169)
chr8 (89-236)||(21416757-21416901)
chr8 (41-236)||(3459413-3459603)
chr8 (94-168)||(30477665-30477739)
chr8 (41-86)||(17319697-17319742)
chr8 (94-158)||(26916901-26916965)
[»] scaffold0074 (1 HSPs)
scaffold0074 (3-153)||(35186-35337)
[»] scaffold0002 (1 HSPs)
scaffold0002 (28-236)||(379674-379879)
[»] chr7 (12 HSPs)
chr7 (3-242)||(16987014-16987250)
chr7 (52-168)||(26762904-26763020)
chr7 (29-233)||(12644744-12644946)
chr7 (45-237)||(39879362-39879552)
chr7 (41-155)||(21161213-21161326)
chr7 (94-273)||(9135252-9135428)
chr7 (94-158)||(5863211-5863275)
chr7 (41-237)||(13292050-13292243)
chr7 (42-158)||(9867942-9868058)
chr7 (52-170)||(7486527-7486645)
chr7 (122-168)||(29373498-29373544)
chr7 (134-170)||(16204355-16204391)
[»] chr6 (16 HSPs)
chr6 (41-236)||(11087473-11087665)
chr6 (42-148)||(31295548-31295654)
chr6 (95-242)||(16130993-16131137)
chr6 (52-168)||(19305446-19305562)
chr6 (117-237)||(33596908-33597025)
chr6 (91-168)||(3404855-3404932)
chr6 (41-106)||(22497353-22497418)
chr6 (41-158)||(30680963-30681080)
chr6 (94-158)||(689860-689924)
chr6 (110-158)||(15480344-15480392)
chr6 (53-238)||(12424240-12424422)
chr6 (168-237)||(19277004-19277072)
chr6 (168-237)||(27860875-27860944)
chr6 (3-92)||(31423897-31423986)
chr6 (43-168)||(34187272-34187396)
chr6 (50-154)||(14080464-14080567)
[»] scaffold0140 (1 HSPs)
scaffold0140 (53-237)||(6281-6462)
[»] chr5 (8 HSPs)
chr5 (41-167)||(22903064-22903190)
chr5 (42-168)||(27083231-27083356)
chr5 (61-199)||(26994571-26994706)
chr5 (44-237)||(22865735-22865925)
chr5 (134-242)||(32418408-32418513)
chr5 (168-237)||(31202302-31202371)
chr5 (173-237)||(24546442-24546506)
chr5 (40-144)||(19993182-19993286)
[»] scaffold0263 (1 HSPs)
scaffold0263 (41-148)||(20510-20617)
[»] scaffold0174 (1 HSPs)
scaffold0174 (25-106)||(29331-29412)
[»] scaffold0023 (1 HSPs)
scaffold0023 (47-168)||(95803-95924)
[»] scaffold0360 (1 HSPs)
scaffold0360 (94-168)||(13946-14020)
[»] scaffold0101 (1 HSPs)
scaffold0101 (41-115)||(10764-10838)
[»] scaffold0054 (1 HSPs)
scaffold0054 (129-199)||(68767-68834)


Alignment Details
Target: chr3 (Bit Score: 392; Significance: 0; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 3 - 516
Target Start/End: Original strand, 13932880 - 13933390
Alignment:
Q  3 ctccggtgagatggtaacggaatctggtacgacgactttgagtcttcgtggtggaacgaaaggtgcctgcagacatgtaagcagttcgacactcaagtca 102  Q
    |||||||||||||||||||  ||| |||| ||| |||||| ||||||||||||||||||||||||||||   ||||||||||||| | ||||||||||||    
T  13932880 ctccggtgagatggtaacgacatccggtatgactactttgggtcttcgtggtggaacgaaaggtgcctg---acatgtaagcagtccaacactcaagtca 13932976  T
Q  103 gtaaatgaactgataaaatgtgtgttgaaaatgttgtgaaaagtgaatcataccttaggggtgaagaagcaagttcactcttatatagacgcgcgttcaa 202  Q
    |||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13932977 gtaattgaactgataaaatgtgggttgaaaatgttgtgaaaagtgaatcataccttaggggtgaagaagcaagttcactcttatatagacgcgcgttcaa 13933076  T
Q  203 cataaccatctctggattatgcggcgtgtgattagagatgatagattacacatataaggtgatcctcgtgcagggtcgcttctatatggcatgatgcact 302  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||| | || ||| ||||||  |||  ||||||||||||||||||||||||||    
T  13933077 cataaccatctctggattatgcggcgtgtgattagagatgatagatgacacttgtagggtaatcctcacgcaatgtcgcttctatatggcatgatgcact 13933176  T
Q  303 tgagctgacgtgttctcttaggcccgaagccttaagatggtgtaagtaagtgatttaatttctagtgaaacacatcgattgaattgtttaagagtccaag 402  Q
    ||||||||||||| |    | ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||    
T  13933177 tgagctgacgtgtacaaggaagcccgaagccttaagatggtgtaagtaagtgatttaatttctagtcaaacacatcgattgaattgtttaagagtcccag 13933276  T
Q  403 ccaaatgtaggtgcttaacgtgggtccgatttgacgctagaaaggaaggtcgatgtgggcctttctactgtgccaacaacttttggatctaattacctaa 502  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13933277 ccaaatgtaggtgcttaacgtgggtccgatttgacgctagaaaggaaggtcgatgtgggcctttctactgtgccaacaacttttggatctaattacctaa 13933376  T
Q  503 gataaggcgattcc 516  Q
    ||||||||||||||    
T  13933377 gataaggcgattcc 13933390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 43 - 168
Target Start/End: Complemental strand, 9801201 - 9801077
Alignment:
Q  43 agtcttcgtggtggaacgaaaggtgcctgcagacatgtaagcagttcgacactcaagtcagtaaatgaactgataaaatgtgtgttgaaaatgttgtgaa 142  Q
    ||||||||  |||||||||||||||||||||  || || |||| | | ||||||||||||||||  |||| || |||  |||||| |||| |||||||||    
T  9801201 agtcttcgcagtggaacgaaaggtgcctgcaagcacgttagcact-caacactcaagtcagtaatagaacagagaaagagtgtgtagaaagtgttgtgaa 9801103  T
Q  143 aagtgaatcataccttaggggtgaag 168  Q
    ||||||||||||||||  ||||||||    
T  9801102 aagtgaatcataccttgagggtgaag 9801077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 40 - 150
Target Start/End: Complemental strand, 431437 - 431327
Alignment:
Q  40 ttgagtcttcgtggtggaacgaaaggtgcctgcagacatgtaagcagttcgacactcaagtcagtaaatgaactgataaaatgtgtgttgaaaatgttgt 139  Q
    ||||||||||| ||||||| ||||||||||| |||||| || |||| |||||| ||||||||| |||  ||||||| |||  ||| || |||| || |||    
T  431437 ttgagtcttcgcggtggaaagaaaggtgcctacagacacgttagcacttcgacgctcaagtcaataatggaactgagaaagagtgcgtggaaagtgctgt 431338  T
Q  140 gaaaagtgaat 150  Q
    |||||||||||    
T  431337 gaaaagtgaat 431327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 89 - 167
Target Start/End: Complemental strand, 17143821 - 17143743
Alignment:
Q  89 cgacactcaagtcagtaaatgaactgataaaatgtgtgttgaaaatgttgtgaaaagtgaatcataccttaggggtgaa 167  Q
    |||| |||||||||||||  ||||||| |||  |||||| |||| ||||||||||||||||||||||||| ||||||||    
T  17143821 cgacgctcaagtcagtaatggaactgagaaagagtgtgtagaaagtgttgtgaaaagtgaatcataccttgggggtgaa 17143743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 124 - 199
Target Start/End: Original strand, 16704456 - 16704528
Alignment:
Q  124 gtgttgaaaatgttgtgaaaagtgaatcataccttaggggtgaagaagcaagttcactcttatatagacgcgcgtt 199  Q
    |||| |||| |||||||||||||||||||||||||  ||||   ||||||||||||| ||||||||| ||||||||    
T  16704456 gtgtagaaagtgttgtgaaaagtgaatcataccttgagggt---gaagcaagttcacccttatataggcgcgcgtt 16704528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 168 - 237
Target Start/End: Original strand, 25496033 - 25496102
Alignment:
Q  168 gaagcaagttcactcttatatagacgcgcgttcaacataaccatctctggattatgcggcgtgtgattag 237  Q
    ||||||||||||| ||||||||| ||| |||| | ||||||| |||| || |||||||||||||||||||    
T  25496033 gaagcaagttcacccttatataggcgcacgttgatcataaccgtctccgggttatgcggcgtgtgattag 25496102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 40 - 317
Target Start/End: Original strand, 1770795 - 1771070
Alignment:
Q  40 ttgagtcttcgtggtggaacgaaaggtgcctgcagacatgtaagcagttcgacactcaagtcagtaaatgaactgataaaatgtgtgttgaaaatgttgt 139  Q
    ||||||||| | ||||||| |||||||| |||||  ||||| || | | |||| ||||||| |||||  |||||||  ||  |||||| |||| ||||||    
T  1770795 ttgagtctttgcggtggaaggaaaggtgtctgcaagcatgttagtactccgacgctcaagttagtaatggaactgaggaagagtgtgtagaaagtgttgt 1770894  T
Q  140 gaaaagtgaatcatac-cttaggggtgaagaagcaagttcactcttatatagacgcgcgttcaacataaccatctctggattatgcggcgtgtgattaga 238  Q
    ||||||||| |||| | | | | ||  | ||||||||||| | |||||||||  |||||||   ||||||| |||| | |||||||||||| |||||||     
T  1770895 gaaaagtga-tcatgcgccttgagg--atgaagcaagttcgcccttatataggtgcgcgttgtgcataaccgtctccgaattatgcggcgtatgattagg 1770991  T
Q  239 gatgatagattacacatataaggtgatcctcgtgcagggtcg--cttctatatggcatgatgcacttgagctgacgtgttc 317  Q
    || ||||||  ||||   |||||||||||||| || ||| ||  ||||||| |||||   ||||||||||||||| |||||    
T  1770992 gacgatagaggacac--gtaaggtgatcctcgcgcgggggcgcacttctatgtggcacagtgcacttgagctgacatgttc 1771070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 94 - 168
Target Start/End: Complemental strand, 21342354 - 21342280
Alignment:
Q  94 ctcaagtcagtaaatgaactgataaaatgtgtgttgaaaatgttgtgaaaagtgaatcataccttaggggtgaag 168  Q
    |||||||||||||  |||||||||||  |||| | |||| |||||||||||||||||||||| ||  ||||||||    
T  21342354 ctcaagtcagtaatggaactgataaagagtgtatagaaagtgttgtgaaaagtgaatcatacattgagggtgaag 21342280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 43 - 148
Target Start/End: Original strand, 12516158 - 12516263
Alignment:
Q  43 agtcttcgtggtggaacgaaaggtgcctgcagacatgtaagcagttcgacactcaagtcagtaaatgaactgataaaatgtgtgttgaaaatgttgtgaa 142  Q
    ||||||| ||||| ||||||||||||||||||||| || |||| | |||| ||||||| |||||  ||||||| |||   |||||   || |||||||||    
T  12516158 agtcttcatggtgaaacgaaaggtgcctgcagacacgttagcactccgacgctcaagttagtaatggaactgagaaagattgtgtaataagtgttgtgaa 12516257  T
Q  143 aagtga 148  Q
    ||||||    
T  12516258 aagtga 12516263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 42 - 105
Target Start/End: Original strand, 12051729 - 12051792
Alignment:
Q  42 gagtcttcgtggtggaacgaaaggtgcctgcagacatgtaagcagttcgacactcaagtcagta 105  Q
    ||||||||||||||||||||| ||| |||||| |||||| |||| ||| || || |||||||||    
T  12051729 gagtcttcgtggtggaacgaatggtacctgcaaacatgttagcacttcaacgcttaagtcagta 12051792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 98 - 167
Target Start/End: Complemental strand, 28715551 - 28715482
Alignment:
Q  98 agtcagtaaatgaactgataaaatgtgtgttgaaaatgttgtgaaaagtgaatcataccttaggggtgaa 167  Q
    |||||||||  ||||||| |||  ||||||  ||| |||||||||||||||||||||||||  |||||||    
T  28715551 agtcagtaatggaactgagaaagagtgtgtataaagtgttgtgaaaagtgaatcataccttgagggtgaa 28715482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 41 - 73
Target Start/End: Original strand, 21649384 - 21649416
Alignment:
Q  41 tgagtcttcgtggtggaacgaaaggtgcctgca 73  Q
    |||||||||| ||||||||||||||||||||||    
T  21649384 tgagtcttcgcggtggaacgaaaggtgcctgca 21649416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 41 - 73
Target Start/End: Original strand, 21652614 - 21652646
Alignment:
Q  41 tgagtcttcgtggtggaacgaaaggtgcctgca 73  Q
    ||||||||||||||||||||||| |||||||||    
T  21652614 tgagtcttcgtggtggaacgaaacgtgcctgca 21652646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 65; Significance: 2e-28; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 40 - 270
Target Start/End: Original strand, 19643672 - 19643899
Alignment:
Q  40 ttgagtcttcgtggtggaacgaaaggtgcctgcagacatgtaagcagttcgacactcaagtcagtaaatgaactgataaaatgtgtgttgaaaatgttgt 139  Q
    ||||||||||||| ||||||| |||||||| ||||  | || | || | |||| || ||||||||||  ||||||| |||  |||||| |||| | ||||    
T  19643672 ttgagtcttcgtgatggaacggaaggtgcccgcaggtacgttaccaatccgacgcttaagtcagtaatggaactgagaaagagtgtgtagaaagtcttgt 19643771  T
Q  140 gaaaagtgaatcataccttaggggtgaagaagcaagttcactcttatatagacgcgcgttcaacataaccatctctggattatgcggcgtgtgattagag 239  Q
    |||||||||||||||||||  |||||||    ||||||||| ||||||||| || ||||| |  |||||| ||||||  |||||||||||| |||||| |    
T  19643772 gaaaagtgaatcataccttgagggtgaaa---caagttcacccttatataggcgtgcgttgaggataaccgtctctgagttatgcggcgtgagattaggg 19643868  T
Q  240 atgatagattacacatataaggtgatcctcg 270  Q
    | | ||||  |||||||||||||||||||||    
T  19643869 acggtagaggacacatataaggtgatcctcg 19643899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 29 - 236
Target Start/End: Original strand, 12683744 - 12683948
Alignment:
Q  29 gtacgacgactttgagtcttcgtggtggaacgaaaggtgcctgcagacatgtaagcagttcgacactcaagtcagtaaatgaactgataaaatgtgtgtt 128  Q
    ||||||||||  |||||||| | ||||||||||||||||||||||| || || |||| | | || ||||||| |||||   |||||| |||  ||||||     
T  12683744 gtacgacgacgatgagtctttgcggtggaacgaaaggtgcctgcaggcacgttagcactccaacgctcaagttagtaatgaaactgagaaagagtgtgta 12683843  T
Q  129 gaaaatgttgtgaaaagtgaatcataccttaggggtgaagaagcaagttcactcttatatagacgcgcgttcaacataaccatctctggattatgcggcg 228  Q
    |||| |||||||||||||||||||||||||| ||||   ||||||||||||| ||||| ||| ||||| || | ||||||| |||| |  ||||||| ||    
T  12683844 gaaagtgttgtgaaaagtgaatcataccttaagggt---gaagcaagttcacccttatctaggcgcgcattaagcataaccgtctccgagttatgcgacg 12683940  T
Q  229 tgtgatta 236  Q
    | ||||||    
T  12683941 tatgatta 12683948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 42 - 168
Target Start/End: Original strand, 47253249 - 47253375
Alignment:
Q  42 gagtcttcgtggtggaacgaaaggtgcctgcagacatgtaagcagttcgacactcaagtcagtaaatgaactgataaaatgtgtgttgaaaatgttgtga 141  Q
    ||||||||| ||||| || |||||||| ||||| ||||| |||| | | || |||||||||||||  ||||||| |||  ||||||  ||| ||||||||    
T  47253249 gagtcttcggggtgggacaaaaggtgcttgcaggcatgttagcactccaacgctcaagtcagtaatggaactgagaaagagtgtgtaaaaagtgttgtga 47253348  T
Q  142 aaagtgaatcataccttaggggtgaag 168  Q
    |||||||||||||||||  ||||||||    
T  47253349 aaagtgaatcataccttgagggtgaag 47253375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 122 - 237
Target Start/End: Complemental strand, 2674613 - 2674501
Alignment:
Q  122 gtgtgttgaaaatgttgtgaaaagtgaatcataccttaggggtgaagaagcaagttcactcttatatagacgcgcgttcaacataaccatctctggatta 221  Q
    |||||| |||| |||||||||||||||||||||||||   |  || |||| |||||||| ||||||||  |||||||| | ||||||| |||| |||||     
T  2674613 gtgtgtagaaagtgttgtgaaaagtgaatcatacctt---gaggatgaagtaagttcacccttatataagcgcgcgttgagcataaccgtctccggattt 2674517  T
Q  222 tgcggcgtgtgattag 237  Q
    ||||||||||||||||    
T  2674516 tgcggcgtgtgattag 2674501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 52 - 227
Target Start/End: Original strand, 29157084 - 29157256
Alignment:
Q  52 ggtggaacgaaaggtgcctgcagacatgtaagcagttcgacactcaagtcagtaaatgaactgataaaatgtgtgttgaaaatgttgtgaaaagtgaatc 151  Q
    ||||||||||||||||| |||||||| ||  ||| | | || ||||||| |||||  ||||||| |||| |||||| | || ||||||| |||||||| |    
T  29157084 ggtggaacgaaaggtgcatgcagacacgtttgcactccaacgctcaagttagtaatggaactgagaaaaagtgtgtagtaagtgttgtgtaaagtgaacc 29157183  T
Q  152 ataccttaggggtgaagaagcaagttcactcttatatagacgcgcgttcaacataaccatctctggattatgcggc 227  Q
    |||||||   | ||  |||| |||||||| ||||||||| |||||||  |  |||||| ||||||| |||||||||    
T  29157184 atacctt---gatggtgaagtaagttcacccttatataggcgcgcgtagaggataaccgtctctgggttatgcggc 29157256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 3 - 236
Target Start/End: Complemental strand, 15742311 - 15742081
Alignment:
Q  3 ctccggtgagatggtaacggaatctggtacgacgactttgagtcttcgtggtggaacgaaaggtgcctgcagacatgtaagcagttcgacactcaagtca 102  Q
    |||||||| || ||||||||  ||||  ||| ||||  ||||||||||||||||| |||||||||||||| | || || |||| |   || |||||||||    
T  15742311 ctccggtgtgacggtaacggtttctgacacggcgacgatgagtcttcgtggtggagcgaaaggtgcctgctggcacgttagcactcttacgctcaagtca 15742212  T
Q  103 gtaaatgaactgataaaatgtgtgttgaaaatgttgtgaaaagtgaatcataccttaggggtgaagaagcaagttcactcttatatagacgcgcgttcaa 202  Q
    ||||  ||||||| |||| ||||||   || |||||||||||||||    ||||||  |  |   ||||||| ||||| ||||||||| |||| |||       
T  15742211 gtaatggaactgagaaaaagtgtgtaagaagtgttgtgaaaagtgatgtgtaccttgagact---gaagcaaattcacccttatataggcgcgtgttggc 15742115  T
Q  203 cataaccatctctggattatgcggcgtgtgatta 236  Q
    ||||||| |||| || ||||||||||||||||||    
T  15742114 cataaccgtctccgggttatgcggcgtgtgatta 15742081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 41 - 167
Target Start/End: Original strand, 19809673 - 19809798
Alignment:
Q  41 tgagtcttcgtggtggaacgaaaggtgcctgcagacatgtaagcagttcgacactcaagtcagtaaatgaactgataaaatgtgtgttgaaaatgttgtg 140  Q
    |||||||||| ||| || |||||||| ||||||||||||| |||| | | || |||||||||||||   |||| | |||  |||||| |||| |||||||    
T  19809673 tgagtcttcgcggttga-cgaaaggttcctgcagacatgttagcactccaacgctcaagtcagtaatgaaactaagaaagagtgtgtagaaagtgttgtg 19809771  T
Q  141 aaaagtgaatcataccttaggggtgaa 167  Q
    |||||||||| |||||||  |||||||    
T  19809772 aaaagtgaattataccttgagggtgaa 19809798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 54 - 115
Target Start/End: Original strand, 5518524 - 5518585
Alignment:
Q  54 tggaacgaaaggtgcctgcagacatgtaagcagttcgacactcaagtcagtaaatgaactga 115  Q
    ||||||||||||||  |||||||| || |||| ||| || ||||||||||||| ||||||||    
T  5518524 tggaacgaaaggtgagtgcagacacgttagcacttcaacgctcaagtcagtaattgaactga 5518585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 60; Significance: 2e-25; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 28 - 233
Target Start/End: Original strand, 3586321 - 3586523
Alignment:
Q  28 ggtacgacgactttgagtcttcgtggtggaacgaaaggtgcctgcagacatgtaagcagttcgacactcaagtcagtaaatgaactgataaaatgtgtgt 127  Q
    |||||| |||| ||||||||| | ||||||| ||||||||| ||| | || || || | | |||| |||||||||||||  ||||||| |||| ||| ||    
T  3586321 ggtacggcgacgttgagtctttgcggtggaatgaaaggtgcatgccggcacgttaggactccgacgctcaagtcagtaatggaactgagaaaaagtgagt 3586420  T
Q  128 tgaaaatgttgtgaaaagtgaatcataccttaggggtgaagaagcaagttcactcttatatagacgcgcgttcaacataaccatctctggattatgcggc 227  Q
     |||| |||||||||||||||||||||||||  ||||   ||||||||||||| ||||||||| ||||||||   |||||||   ||| | |||||||||    
T  3586421 agaaagtgttgtgaaaagtgaatcataccttgagggt---gaagcaagttcacccttatataggcgcgcgttggtcataaccgcttcttggttatgcggc 3586517  T
Q  228 gtgtga 233  Q
    ||||||    
T  3586518 gtgtga 3586523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 41 - 235
Target Start/End: Original strand, 36267469 - 36267660
Alignment:
Q  41 tgagtcttcgtggtggaacgaaaggtgcctgcagacatgtaagcagttcgacactcaagtcagtaaatgaactgataaaatgtgtgttgaaaatgttgtg 140  Q
    ||||||||||  |||||| ||||||||||||||  ||||| | || | | || |||||||||||||   |||||| |||  |||||| ||||  ||||||    
T  36267469 tgagtcttcgcagtggaatgaaaggtgcctgcatgcatgttaacactccaacgctcaagtcagtaatgaaactgagaaagagtgtgtagaaagggttgtg 36267568  T
Q  141 aaaagtgaatcataccttaggggtgaagaagcaagttcactcttatatagacgcgcgttcaacataaccatctctggattatgcggcgtgtgatt 235  Q
    ||||||||||||||||||  ||||   ||||||||||||| |||||||||||| ||||  |  |||||| ||||  ||||||||||||| |||||    
T  36267569 aaaagtgaatcataccttgagggt---gaagcaagttcacccttatatagacgtgcgtcaaggataaccgtctcaagattatgcggcgtatgatt 36267660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 94 - 187
Target Start/End: Original strand, 24499813 - 24499903
Alignment:
Q  94 ctcaagtcagtaaatgaactgataaaatgtgtgttgaaaatgttgtgaaaagtgaatcataccttaggggtgaagaagcaagttcactcttata 187  Q
    |||||||||||||  ||| ||| |||  |||||| ||||||||||||||||||||||||||||||| ||||   ||||||||||||| ||||||    
T  24499813 ctcaagtcagtaatggaaatgagaaagagtgtgtagaaaatgttgtgaaaagtgaatcataccttaagggt---gaagcaagttcacccttata 24499903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 43 - 275
Target Start/End: Complemental strand, 10923283 - 10923054
Alignment:
Q  43 agtcttcgtggtggaacgaaaggtgcctgcagacatgtaagcagttcgacactcaagtcagtaaatgaactgataaaatgtgtgttgaaaatgttgtgaa 142  Q
    |||||||| ||||||||||||||||  || || || || | || | |||||||||||||||| |  ||||| |||||  |||||| |||| || ||||||    
T  10923283 agtcttcgcggtggaacgaaaggtgtatgtaggcacgttatcactccgacactcaagtcagttatggaacttataaagagtgtgtagaaagtgctgtgaa 10923184  T
Q  143 aagtgaatcataccttaggggtgaagaagcaagttcactcttatatagacgcgcgttcaacataaccatctctggattatgcggcgtgtgattagagatg 242  Q
    |||||||   | ||||  ||||   ||||||||||||| |||||||| ||| | |||   ||||||  |||  || |||||||||||||||||||||| |    
T  10923183 aagtgaagtgtgccttgagggt---gaagcaagttcacccttatatacacgtgtgttggtcataacagtcttcggcttatgcggcgtgtgattagagacg 10923087  T
Q  243 atagattacacatataaggtgatcctcgtgcag 275  Q
      |||  |||| | || ||||||||||||||||    
T  10923086 gaagaggacacgtgtagggtgatcctcgtgcag 10923054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 52 - 158
Target Start/End: Original strand, 20120329 - 20120435
Alignment:
Q  52 ggtggaacgaaaggtgcctgcagacatgtaagcagttcgacactcaagtcagtaaatgaactgataaaatgtgtgttgaaaatgttgtgaaaagtgaatc 151  Q
    |||||||||||||||| |||||| || || |||| | |||| |||||||||||||   |||||| |||  |||||| |||| || ||||| |||||||||    
T  20120329 ggtggaacgaaaggtgtctgcaggcacgttagcactccgactctcaagtcagtaatgaaactgagaaagagtgtgtggaaagtggtgtgataagtgaatc 20120428  T
Q  152 atacctt 158  Q
    |||||||    
T  20120429 atacctt 20120435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 41 - 158
Target Start/End: Original strand, 45714966 - 45715083
Alignment:
Q  41 tgagtcttcgtggtggaacgaaaggtgcctgcagacatgtaagcagttcgacactcaagtcagtaaatgaactgataaaatgtgtgttgaaaatgttgtg 140  Q
    ||||||||| |||||||||||||||||| ||||| || || |||| | | || |||||||||||||   |||||| |||  ||||||  ||| ||| |||    
T  45714966 tgagtcttcctggtggaacgaaaggtgcatgcaggcacgttagcactccaacgctcaagtcagtaatgaaactgagaaagagtgtgtaaaaagtgtggtg 45715065  T
Q  141 aaaagtgaatcatacctt 158  Q
    |||| |||||||||||||    
T  45715066 aaaattgaatcatacctt 45715083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 44 - 168
Target Start/End: Complemental strand, 12127780 - 12127656
Alignment:
Q  44 gtcttcgtggtggaacgaaaggtgcctgcagacatgtaagcagttcgacactcaagtcagtaaatgaactgataaaatgtgtgttgaaaatgttgtgaaa 143  Q
    ||||||| ||||| ||||||||| ||||||| || || |||| | | || |||||||||||||   |||| | ||  ||||||| |||| ||||||||||    
T  12127780 gtcttcgcggtgggacgaaaggtacctgcaggcacgttagcactccaacgctcaagtcagtaatgaaactaagaacgtgtgtgtagaaagtgttgtgaaa 12127681  T
Q  144 agtgaatcataccttaggggtgaag 168  Q
    |||||||||||| || | |||||||    
T  12127680 agtgaatcatactttggtggtgaag 12127656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 42 - 146
Target Start/End: Original strand, 15825126 - 15825230
Alignment:
Q  42 gagtcttcgtggtggaacgaaaggtgcctgcagacatgtaagcagttcgacactcaagtcagtaaatgaactgataaaatgtgtgttgaaaatgttgtga 141  Q
    ||||||| |||||||||||||| ||| |||||| || || |||| || ||| |||||||| ||||  ||||||| |||  |||||| |||| ||||||||    
T  15825126 gagtctttgtggtggaacgaaatgtgtctgcaggcacgttagcactttgacgctcaagtcggtaatggaactgagaaagagtgtgtagaaagtgttgtga 15825225  T
Q  142 aaagt 146  Q
    |||||    
T  15825226 aaagt 15825230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 168 - 236
Target Start/End: Original strand, 18772343 - 18772411
Alignment:
Q  168 gaagcaagttcactcttatatagacgcgcgttcaacataaccatctctggattatgcggcgtgtgatta 236  Q
    ||||||||||||| ||||||||||| | ||||   ||||||  |||| |||||||||||||||||||||    
T  18772343 gaagcaagttcacccttatatagacacacgttggtcataactgtctccggattatgcggcgtgtgatta 18772411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 43 - 74
Target Start/End: Complemental strand, 19919184 - 19919153
Alignment:
Q  43 agtcttcgtggtggaacgaaaggtgcctgcag 74  Q
    ||||||||||||||||||||||||||||||||    
T  19919184 agtcttcgtggtggaacgaaaggtgcctgcag 19919153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 95 - 168
Target Start/End: Original strand, 12168998 - 12169071
Alignment:
Q  95 tcaagtcagtaaatgaactgataaaatgtgtgttgaaaatgttgtgaaaagtgaatcataccttaggggtgaag 168  Q
    ||||||||||||  ||||| | |||  |||||| |||| ||||||||||||||||| |||||||  ||||||||    
T  12168998 tcaagtcagtaatggaactaagaaagagtgtgtagaaagtgttgtgaaaagtgaattataccttgagggtgaag 12169071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 123 - 168
Target Start/End: Complemental strand, 45258190 - 45258145
Alignment:
Q  123 tgtgttgaaaatgttgtgaaaagtgaatcataccttaggggtgaag 168  Q
    ||||| |||| |||||||||||||||||||||||||  ||||||||    
T  45258190 tgtgtcgaaagtgttgtgaaaagtgaatcataccttgagggtgaag 45258145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 41 - 77
Target Start/End: Original strand, 17671944 - 17671980
Alignment:
Q  41 tgagtcttcgtggtggaacgaaaggtgcctgcagaca 77  Q
    ||||||||| ||||||||||||||||| |||||||||    
T  17671944 tgagtcttcatggtggaacgaaaggtgtctgcagaca 17671980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 56; Significance: 6e-23; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 7 - 158
Target Start/End: Original strand, 12177323 - 12177474
Alignment:
Q  7 ggtgagatggtaacggaatctggtacgacgactttgagtcttcgtggtggaacgaaaggtgcctgcagacatgtaagcagttcgacactcaagtcagtaa 106  Q
    ||||||| ||||| ||  |||||||||||| | ||||||  ||| ||||||||||||||||||| ||  || || |||| | ||||||||||||||||||    
T  12177323 ggtgagacggtaagggtttctggtacgacggcgttgagtaatcgcggtggaacgaaaggtgcctacatgcacgttagcactccgacactcaagtcagtaa 12177422  T
Q  107 atgaactgataaaatgtgtgttgaaaatgttgtgaaaagtgaatcatacctt 158  Q
      ||||||| |||  |||||| |||| ||||||||||||||||| |||||||    
T  12177423 tggaactgagaaagagtgtgtagaaagtgttgtgaaaagtgaattatacctt 12177474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 41 - 168
Target Start/End: Original strand, 52565551 - 52565678
Alignment:
Q  41 tgagtcttcgtggtggaacgaaaggtgcctgcagacatgtaagcagttcgacactcaagtcagtaaatgaactgataaaatgtgtgttgaaaatgttgtg 140  Q
    ||||| |||||| |||||||||||||||||||||||| || |||| |  ||| |||||||||||||| ||||||| |||  ||| |  |||| |||||||    
T  52565551 tgagttttcgtgatggaacgaaaggtgcctgcagacacgttagcactctgacgctcaagtcagtaaaggaactgaaaaagagtgcgcagaaagtgttgtg 52565650  T
Q  141 aaaagtgaatcataccttaggggtgaag 168  Q
    |||||||||||||| |||  ||||||||    
T  52565651 aaaagtgaatcataacttgagggtgaag 52565678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 41 - 168
Target Start/End: Original strand, 22414746 - 22414873
Alignment:
Q  41 tgagtcttcgtggtggaacgaaaggtgcctgcagacatgtaagcagttcgacactcaagtcagtaaatgaactgataaaatgtgtgttgaaaatgttgtg 140  Q
    |||||||| | |||||||||||||||||| |||| || || |||| |  ||| |||||||||||||   |||||| |||| |||||| |||| |||||||    
T  22414746 tgagtctttgcggtggaacgaaaggtgcccgcaggcacgttagcactctgacgctcaagtcagtaatgaaactgaaaaaaagtgtgtagaaagtgttgtg 22414845  T
Q  141 aaaagtgaatcataccttaggggtgaag 168  Q
    |||||||||||||| |||  ||||||||    
T  22414846 aaaagtgaatcatatcttgagggtgaag 22414873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 52 - 168
Target Start/End: Original strand, 26977722 - 26977838
Alignment:
Q  52 ggtggaacgaaaggtgcctgcagacatgtaagcagttcgacactcaagtcagtaaatgaactgataaaatgtgtgttgaaaatgttgtgaaaagtgaatc 151  Q
    ||||||||||||||||||||||| || || |||| | | || |||||||||||||  |||| || |||  |||||| |||| | ||||||||| ||||||    
T  26977722 ggtggaacgaaaggtgcctgcaggcacgttagcactccaacgctcaagtcagtaatggaaccgagaaagagtgtgtagaaagtattgtgaaaaatgaatc 26977821  T
Q  152 ataccttaggggtgaag 168  Q
    |||||||  ||||||||    
T  26977822 ataccttgagggtgaag 26977838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 41 - 158
Target Start/End: Original strand, 16030366 - 16030483
Alignment:
Q  41 tgagtcttcgtggtggaacgaaaggtgcctgcagacatgtaagcagttcgacactcaagtcagtaaatgaactgataaaatgtgtgttgaaaatgttgtg 140  Q
    |||||||||  ||||||| |||||||| |||||| || || | ||||   |  |||||||||||||  |||||||  ||  |||||| |||| |||||||    
T  16030366 tgagtcttcacggtggaatgaaaggtgtctgcaggcacgttatcagtcaaatgctcaagtcagtaatggaactgaataagagtgtgtagaaagtgttgtg 16030465  T
Q  141 aaaagtgaatcatacctt 158  Q
    ||||||||||||||||||    
T  16030466 aaaagtgaatcatacctt 16030483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 54 - 150
Target Start/End: Complemental strand, 23280367 - 23280273
Alignment:
Q  54 tggaacgaaaggtgcctgcagacatgtaagcagttcgacactcaagtcagtaaatgaactgataaaatgtgtgttgaaaatgttgtgaaaagtgaat 150  Q
    ||||||||||||||||||||||||||| | || |   || |||||||||||||  ||||||| ||| |||||||  | | |||||||||||||||||    
T  23280367 tggaacgaaaggtgcctgcagacatgttatcactcaaactctcaagtcagtaatggaactgagaaagtgtgtgt--atagtgttgtgaaaagtgaat 23280273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 41 - 149
Target Start/End: Complemental strand, 33101627 - 33101519
Alignment:
Q  41 tgagtcttcgtggtggaacgaaaggtgcctgcagacatgtaagcagttcgacactcaagtcagtaaatgaactgataaaatgtgtgttgaaaatgttgtg 140  Q
    ||||||||||  || ||| ||||||||| ||||| || || |||| | | || |||||||| ||||  ||||||| |||| |||||| |||| |||||||    
T  33101627 tgagtcttcgctgtagaatgaaaggtgcatgcaggcacgttagcactccaacgctcaagtcggtaatggaactgagaaaaagtgtgtagaaagtgttgtg 33101528  T
Q  141 aaaagtgaa 149  Q
    |||||||||    
T  33101527 aaaagtgaa 33101519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 43 - 106
Target Start/End: Complemental strand, 4601605 - 4601542
Alignment:
Q  43 agtcttcgtggtggaacgaaaggtgcctgcagacatgtaagcagttcgacactcaagtcagtaa 106  Q
    |||||||| |||||||||||||||| |||||| || || |||| | |||| |||||||||||||    
T  4601605 agtcttcgcggtggaacgaaaggtgactgcaggcacgttagcactccgacgctcaagtcagtaa 4601542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 94 - 168
Target Start/End: Original strand, 34273111 - 34273185
Alignment:
Q  94 ctcaagtcagtaaatgaactgataaaatgtgtgttgaaaatgttgtgaaaagtgaatcataccttaggggtgaag 168  Q
    |||||||||||||  ||||||| |||  |||||| |||| ||||||| ||||||| |||||||||  ||||||||    
T  34273111 ctcaagtcagtaacggaactgagaaagagtgtgtagaaagtgttgtgtaaagtgactcataccttgagggtgaag 34273185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 94 - 155
Target Start/End: Original strand, 5671794 - 5671855
Alignment:
Q  94 ctcaagtcagtaaatgaactgataaaatgtgtgttgaaaatgttgtgaaaagtgaatcatac 155  Q
    ||||||| |||||  ||||||| |||  |||||| |||| ||||||||||||||||||||||    
T  5671794 ctcaagttagtaatggaactgagaaagagtgtgtagaaagtgttgtgaaaagtgaatcatac 5671855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 41 - 73
Target Start/End: Complemental strand, 14255150 - 14255118
Alignment:
Q  41 tgagtcttcgtggtggaacgaaaggtgcctgca 73  Q
    |||||||||||||||||||||| ||||||||||    
T  14255150 tgagtcttcgtggtggaacgaagggtgcctgca 14255118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0291 (Bit Score: 51; Significance: 6e-20; HSPs: 2)
Name: scaffold0291
Description:

Target: scaffold0291; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 40 - 240
Target Start/End: Complemental strand, 8697 - 8505
Alignment:
Q  40 ttgagtcttcgtggtggaacgaaaggtgcctgcagacatgtaagcagttcgacactcaagtcagtaaatgaactgataaaatgtgtgttgaaaatgttgt 139  Q
    ||||||||| | |||||||  |||||||  ||||| || || |||| |||||| |||||||||||||   |||||| |||  |||||| |||| ||||||    
T  8697 ttgagtctttgcggtggaataaaaggtgtttgcag-cacgttagcacttcgacgctcaagtcagtaatgaaactgaaaaacagtgtgtagaaagtgttgt 8599  T
Q  140 gaaaagtgaatcataccttaggggtgaagaagcaagttcactcttatatagacgcgcgttcaacataaccatctctggattatgcggcgtgtgattagag 239  Q
    |||||||||||||||||||| |||||       || ||||| ||||||||| |||||||| | ||||||| |||| || |||||| |||| |||||||||    
T  8598 gaaaagtgaatcataccttaagggtg-------aacttcacccttatataggcgcgcgttgagcataaccgtctccgggttatgcagcgtttgattagag 8506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0291; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 129 - 270
Target Start/End: Complemental strand, 15462 - 15324
Alignment:
Q  129 gaaaatgttgtgaaaagtgaatcataccttaggggtgaagaagcaagttcactcttatatagacgcgcgttcaacataaccatctctggattatgcggcg 228  Q
    |||| |||||||||||||||||||||||||  ||||   ||||||||||||| |||||||||  || ||||   ||||||| | || |||||||||| |     
T  15462 gaaagtgttgtgaaaagtgaatcataccttgagggt---gaagcaagttcacccttatataggtgcacgttagtcataaccgtgtccggattatgcgaca 15366  T
Q  229 tgtgattagagatgatagattacacatataaggtgatcctcg 270  Q
    ||||||||| ||  |  ||  |||||| ||||||||||||||    
T  15365 tgtgattagggacaaaggaggacacatgtaaggtgatcctcg 15324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 50; Significance: 2e-19; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 42 - 155
Target Start/End: Original strand, 18322915 - 18323028
Alignment:
Q  42 gagtcttcgtggtggaacgaaaggtgcctgcagacatgtaagcagttcgacactcaagtcagtaaatgaactgataaaatgtgtgttgaaaatgttgtga 141  Q
    ||||||||| |||||||| |||||||| ||||||||||| | || | | || |||||||||||||  ||||||| |||   ||||| |||||||||||||    
T  18322915 gagtcttcgcggtggaacaaaaggtgcatgcagacatgttaacactccaacgctcaagtcagtaatagaactgagaaagattgtgtagaaaatgttgtga 18323014  T
Q  142 aaagtgaatcatac 155  Q
    ||||||||||||||    
T  18323015 aaagtgaatcatac 18323028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 82 - 167
Target Start/End: Complemental strand, 6928169 - 6928084
Alignment:
Q  82 agcagttcgacactcaagtcagtaaatgaactgataaaatgtgtgttgaaaatgttgtgaaaagtgaatcataccttaggggtgaa 167  Q
    |||| ||| ||||||||||||||||  ||||||| |||  |||||| |||| |||||||||||||||||||||||||  |||||||    
T  6928169 agcatttcaacactcaagtcagtaatggaactgagaaagagtgtgtagaaagtgttgtgaaaagtgaatcataccttgagggtgaa 6928084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 89 - 236
Target Start/End: Original strand, 21416757 - 21416901
Alignment:
Q  89 cgacactcaagtcagtaaatgaactgataaaatgtgtgttgaaaatgttgtgaaaagtgaatcataccttaggggtgaagaagcaagttcactcttatat 188  Q
    |||| |||||||||||||   |||||| |||  |||||| |||| ||||||||||| |||||| ||||||| ||||   ||||||||||||| ||| |||    
T  21416757 cgacgctcaagtcagtaatgaaactgagaaagagtgtgtagaaagtgttgtgaaaaatgaatcgtaccttaagggt---gaagcaagttcacccttgtat 21416853  T
Q  189 agacgcgcgttcaacataaccatctctggattatgcggcgtgtgatta 236  Q
    ||  |||||||   ||||||| |||| || ||||||||| ||||||||    
T  21416854 aggggcgcgttgggcataaccgtctccgggttatgcggcctgtgatta 21416901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 41 - 236
Target Start/End: Complemental strand, 3459603 - 3459413
Alignment:
Q  41 tgagtcttcgtggtggaacgaaaggtgcctgcagacatgtaagcagttcgacactcaagtcagtaaatgaactgataaaatgtgtgttgaaaatgtt-gt 139  Q
    |||||||||| |||||  |||||||||||||||| || || |||| | || | |||||||||||||  |||||||  ||  |||||| |||| |||| ||    
T  3459603 tgagtcttcgcggtggg-cgaaaggtgcctgcaggcacgttagcactccggcgctcaagtcagtaatggaactgagcaagagtgtgtagaaagtgttggt 3459505  T
Q  140 gaaaagtgaatcataccttaggggtgaagaagcaagttcactcttatatagacgcgcgttcaacataaccatctctggattatgcggcgtgtgatta 236  Q
    ||||||| |||| |||||| | |||   ||||||||||||| ||||||||| |||| |||   | ||||| ||||||| ||||||||||||||||||    
T  3459504 gaaaagtaaatcgtacctt-gaggt---gaagcaagttcacccttatataggcgcg-gttggtcgtaaccgtctctgggttatgcggcgtgtgatta 3459413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 94 - 168
Target Start/End: Original strand, 30477665 - 30477739
Alignment:
Q  94 ctcaagtcagtaaatgaactgataaaatgtgtgttgaaaatgttgtgaaaagtgaatcataccttaggggtgaag 168  Q
    |||||||||||||   |||||| |||  |||||| |||| |||||||||||||||||||||||||  ||||||||    
T  30477665 ctcaagtcagtaacgaaactgagaaagagtgtgtagaaagtgttgtgaaaagtgaatcataccttgagggtgaag 30477739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 41 - 86
Target Start/End: Complemental strand, 17319742 - 17319697
Alignment:
Q  41 tgagtcttcgtggtggaacgaaaggtgcctgcagacatgtaagcag 86  Q
    |||||||||||||||||||||||||||| ||||| ||||| |||||    
T  17319742 tgagtcttcgtggtggaacgaaaggtgcatgcaggcatgttagcag 17319697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 94 - 158
Target Start/End: Complemental strand, 26916965 - 26916901
Alignment:
Q  94 ctcaagtcagtaaatgaactgataaaatgtgtgttgaaaatgttgtgaaaagtgaatcatacctt 158  Q
    |||||||||||||  ||||||| | |  |||||| |||| ||||||||||||||| |||||||||    
T  26916965 ctcaagtcagtaatggaactgagagagagtgtgtagaaagtgttgtgaaaagtgagtcatacctt 26916901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0074 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: scaffold0074
Description:

Target: scaffold0074; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 3 - 153
Target Start/End: Original strand, 35186 - 35337
Alignment:
Q  3 ctccggtgagatggtaacggaatctggtacgacgactttgagtcttcgtggtggaacgaaaggtgcctgcagacatgtaagcagttcgacactcaagtca 102  Q
    |||||||| |||||||||||  || |||||| || | |||||||||||| ||| ||||||| |||| ||||| || || |||| |  |||||||||||||    
T  35186 ctccggtgtgatggtaacggcttccggtacggcggcgttgagtcttcgtagtgcaacgaaatgtgcttgcaggcacgttagcactctgacactcaagtca 35285  T
Q  103 gtaaatgaactgataaaatgtgtgttgaaaatgttgtg-aaaagtgaatcat 153  Q
    ||||  ||||||| |||  |||||| |||| ||||||| |||||||||||||    
T  35286 gtaacggaactgagaaagagtgtgtggaaagtgttgtgaaaaagtgaatcat 35337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 28 - 236
Target Start/End: Original strand, 379674 - 379879
Alignment:
Q  28 ggtacgacgactttgagtcttcgtggtggaacgaaaggtgcctgcagacatgtaagcagttcgacactcaagtcagtaaatgaactgataaaatgtgtgt 127  Q
    |||||| ||||  |||||||||| ||||||||||||||||| |  || || || |||| || |||||| ||||||||||  ||||||| |||  ||||||    
T  379674 ggtacggcgacgatgagtcttcgcggtggaacgaaaggtgcatctaggcacgttagcactttgacactgaagtcagtaatggaactgagaaagagtgtgt 379773  T
Q  128 tgaaaatgttgtgaaaagtgaatcataccttaggggtgaagaagcaagttcactcttatatagacgcgcgttcaacataaccatctctggattatgcggc 227  Q
       || |||||||||||||||    ||||||  ||||   ||||||||||||| | ||||||| |||  |||   |||||||||||||| ||||||||||    
T  379774 aagaagtgttgtgaaaagtgatgtgtaccttgagggt---gaagcaagttcacccgtatataggcgcatgttggtcataaccatctctgaattatgcggc 379870  T
Q  228 gtgtgatta 236  Q
    |||||||||    
T  379871 gtgtgatta 379879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 46; Significance: 5e-17; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 3 - 242
Target Start/End: Complemental strand, 16987250 - 16987014
Alignment:
Q  3 ctccggtgagatggtaacggaatctggtacgacgactttgagtcttcgtggtggaacgaaaggtgcctgcagacatgtaagcagttcgacactcaagtca 102  Q
    |||||||| || | ||||||  ||||||||| || |  |||||||||| ||||||||||||||||| ||| | || || |||| |  |||||||||| ||    
T  16987250 ctccggtgtgacgctaacggcttctggtacggcggcaatgagtcttcgcggtggaacgaaaggtgcatgcgggcacgttagcactctgacactcaagcca 16987151  T
Q  103 gtaaatgaactgataaaatgtgtgttgaaaatgttgtgaaaagtgaatcataccttaggggtgaagaagcaagttcactcttatatagacgcgcgttcaa 202  Q
    ||||  ||| ||| |||  ||||||   || |||||||||||||||    | |||||  |||||||   ||||||||| ||||||||| ||||||||       
T  16987150 gtaatggaattgagaaagagtgtgtaagaagtgttgtgaaaagtgatgtgtcccttaaaggtgaag---caagttcacccttatataggcgcgcgttggc 16987054  T
Q  203 cataaccatctctggattatgcggcgtgtgattagagatg 242  Q
    ||||||| |||| ||||||||||| |||||||||| ||||    
T  16987053 cataaccgtctccggattatgcggtgtgtgattagggatg 16987014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 52 - 168
Target Start/End: Complemental strand, 26763020 - 26762904
Alignment:
Q  52 ggtggaacgaaaggtgcctgcagacatgtaagcagttcgacactcaagtcagtaaatgaactgataaaatgtgtgttgaaaatgttgtgaaaagtgaatc 151  Q
    |||||| |||||||| | ||||| || || |||| | | || |||||||||||||| ||||| |||||  |||||| |||| ||||||||||||||||||    
T  26763020 ggtggagcgaaaggttcttgcaggcacgttagcactccaacgctcaagtcagtaaaggaactcataaatagtgtgtagaaagtgttgtgaaaagtgaatc 26762921  T
Q  152 ataccttaggggtgaag 168  Q
    |||||||  ||||||||    
T  26762920 ataccttgagggtgaag 26762904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 29 - 233
Target Start/End: Original strand, 12644744 - 12644946
Alignment:
Q  29 gtacgacgactttgagtcttcgtggtggaacgaaaggtgcctgcagacatgtaagcagttcgacactcaagtcagtaaatgaactgataaaatgtgtgtt 128  Q
    ||||||||||  |||||||||  ||||||||||||||||| ||||| || || |||| | |||| |||| ||||||||  ||||||| |||| ||||||     
T  12644744 gtacgacgacgatgagtcttcacggtggaacgaaaggtgcatgcaggcaagttagcactccgacgctcaggtcagtaatggaactgagaaaaagtgtgtg 12644843  T
Q  129 gaaaatgtt-gtgaaaagtgaatcataccttaggggtgaagaagcaagttcactcttatatagacgcgcgttcaacataaccatctctggattatgcggc 227  Q
    |||| |||| |||||||||||||  ||| ||  ||||   ||||||||||||| ||| || || ||||||||   ||||||| |||  || ||||||| |    
T  12644844 gaaagtgttggtgaaaagtgaattgtacgttgagggt---gaagcaagttcacccttgtagaggcgcgcgttggtcataaccgtcttcgggttatgcgac 12644940  T
Q  228 gtgtga 233  Q
    ||||||    
T  12644941 gtgtga 12644946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 45 - 237
Target Start/End: Original strand, 39879362 - 39879552
Alignment:
Q  45 tcttcgtggtggaacgaaaggtgcctgcagacatgtaagcagttcgacactcaagtcagtaaatgaactgataaaatgtgtgttgaaaatgttgtgaaaa 144  Q
    ||||||||||||||||||||||||||||||||| || | || ||  || |||||||||||||   |||||| |||  ||||||  ||| |||||| ||||    
T  39879362 tcttcgtggtggaacgaaaggtgcctgcagacacgttaacactttaacgctcaagtcagtaatgaaactgagaaagagtgtgtaaaaagtgttgtaaaaa 39879461  T
Q  145 gtgaatcataccttaggggtgaagaagcaagttcactcttatatagacgcgcgttcaacataaccatctctggattatgcggcgtgtgattag 237  Q
    ||||||||| || |  ||| |  |||||||  |||| ||||||||||||| | ||  | ||||||  ||| | ||| ||||||||||||||||    
T  39879462 gtgaatcatgccatgaggggg--gaagcaatgtcacccttatatagacgcacattggaaataaccgcctccgaattttgcggcgtgtgattag 39879552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 41 - 155
Target Start/End: Original strand, 21161213 - 21161326
Alignment:
Q  41 tgagtcttcgtggtggaacgaaaggtgcctgcagacatgtaagcagttcgacactcaagtcagtaaatgaactgataaaatgtgtgttgaaaatgttgtg 140  Q
    |||||||||| ||||||||||||| || |||||| || || |||| | | || |||||||||||||  || || | ||| ||||||| |||| |||||||    
T  21161213 tgagtcttcgcggtggaacgaaag-tgtctgcaggcacgttagcactccaacgctcaagtcagtaatggagctaagaaagtgtgtgtagaaagtgttgtg 21161311  T
Q  141 aaaagtgaatcatac 155  Q
    |||||||||||||||    
T  21161312 aaaagtgaatcatac 21161326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 94 - 273
Target Start/End: Complemental strand, 9135428 - 9135252
Alignment:
Q  94 ctcaagtcagtaaatgaactgataaaatgtgtgttgaaaatgttgtgaaaagtgaatcataccttaggggtgaagaagcaagttcactcttatatagacg 193  Q
    |||||||||||||  ||| ||| |||  ||||||  ||| |||||||||||||||||||||||||  ||||   ||||||| ||||| |||||||||||     
T  9135428 ctcaagtcagtaatggaattgagaaagagtgtgtaaaaactgttgtgaaaagtgaatcataccttgagggt---gaagcaaattcacccttatatagaca 9135332  T
Q  194 cgcgttcaacataaccatctctggattatgcggcgtgtgattagagatgatagattacacatataaggtgatcctcgtgc 273  Q
    ||  ||   ||||||| |||| || |||||  |||||||||||| || |   ||  |||||| |||||||||||||||||    
T  9135331 cgtattggtcataaccgtctccgggttatgtagcgtgtgattagggacggaggaggacacatgtaaggtgatcctcgtgc 9135252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 94 - 158
Target Start/End: Original strand, 5863211 - 5863275
Alignment:
Q  94 ctcaagtcagtaaatgaactgataaaatgtgtgttgaaaatgttgtgaaaagtgaatcatacctt 158  Q
    |||||||||||||  ||||||| |||  |||||| ||||||||||| ||||||||||||||||||    
T  5863211 ctcaagtcagtaatcgaactgagaaagagtgtgtagaaaatgttgtaaaaagtgaatcatacctt 5863275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 41 - 237
Target Start/End: Complemental strand, 13292243 - 13292050
Alignment:
Q  41 tgagtcttcgtggtggaacgaaaggtgcctgcagacatgtaagcagttcgacactcaagtcagtaaatgaactgataaaatgtgtgttgaaaatgttgtg 140  Q
    |||||||||||||||||| |||||||| ||||||  | || |||| |   || |||||||||||||   |||||| |||  ||||||   || |||||||    
T  13292243 tgagtcttcgtggtggaaggaaaggtgtctgcaggtacgttagcactctaacgctcaagtcagtaatgaaactgaaaaagagtgtgtaagaagtgttgtg 13292144  T
Q  141 aaaagtgaatcataccttaggggtgaagaagcaagttcactcttatatagacgcgcgttcaacataaccatctctggattatgcggcgtgtgattag 237  Q
    ||||||||    ||||||  ||||||||   |||||||||  |||||||| ||||||||   ||||||| |||| || |||||||||||||| ||||    
T  13292143 aaaagtgatgtgtaccttgagggtgaag---caagttcaccattatataggcgcgcgttggccataaccgtctccgggttatgcggcgtgtggttag 13292050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 42 - 158
Target Start/End: Complemental strand, 9868058 - 9867942
Alignment:
Q  42 gagtcttcgtggtggaacgaaaggtgcctgcagacatgtaagcagttcgacactcaagtcagtaaatgaactgataaaatgtgtgttgaaaatgttgtga 141  Q
    ||||||||| ||||| ||||||||||| |||||  | || |||| |  ||| |||||||||||||  |||||||  ||  || ||| |||| |||||| |    
T  9868058 gagtcttcgcggtgggacgaaaggtgcatgcaggaacgttagcactctgacgctcaagtcagtaatggaactgaggaagagtttgtagaaagtgttgtta 9867959  T
Q  142 aaagtgaatcatacctt 158  Q
    |||||||||||||||||    
T  9867958 aaagtgaatcatacctt 9867942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 52 - 170
Target Start/End: Original strand, 7486527 - 7486645
Alignment:
Q  52 ggtggaacgaaaggtgcctgcagacatgtaagcagttcgacactcaagtcagtaaatgaactgataaaatgtgtgttgaaaatgttgtgaaaagtgaatc 151  Q
    ||||||| ||||||||| ||||| || || |||| | | || ||||| |||||||  ||||||| |||   ||||| |||  ||||||||||||||||||    
T  7486527 ggtggaatgaaaggtgcatgcaggcacgttagcactccaacgctcaattcagtaatggaactgagaaagattgtgtagaaggtgttgtgaaaagtgaatc 7486626  T
Q  152 ataccttaggggtgaagaa 170  Q
    || |||||  |||||||||    
T  7486627 atcccttaaaggtgaagaa 7486645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 122 - 168
Target Start/End: Original strand, 29373498 - 29373544
Alignment:
Q  122 gtgtgttgaaaatgttgtgaaaagtgaatcataccttaggggtgaag 168  Q
    |||||| |||||||||||||||| |||||||||||||  ||||||||    
T  29373498 gtgtgtagaaaatgttgtgaaaattgaatcataccttgagggtgaag 29373544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 134 - 170
Target Start/End: Original strand, 16204355 - 16204391
Alignment:
Q  134 tgttgtgaaaagtgaatcataccttaggggtgaagaa 170  Q
    |||||||||||||||| ||||||||| ||||||||||    
T  16204355 tgttgtgaaaagtgaaccataccttaagggtgaagaa 16204391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 46; Significance: 5e-17; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 41 - 236
Target Start/End: Original strand, 11087473 - 11087665
Alignment:
Q  41 tgagtcttcgtggtggaacgaaaggtgcctgcagacatgtaagcagttcgacactcaagtcagtaaatgaactgataaaatgtgtgttgaaaatgttgtg 140  Q
    |||||||||| ||||||||||||| || |||||||||  | |||| || ||| || ||||||||||   |||||| |||  || ||| ||   |||||||    
T  11087473 tgagtcttcgcggtggaacgaaagctgtctgcagacacattagcactttgacccttaagtcagtaatgtaactgagaaagagtatgtagattgtgttgtg 11087572  T
Q  141 aaaagtgaatcataccttaggggtgaagaagcaagttcactcttatatagacgcgcgttcaacataaccatctctggattatgcggcgtgtgatta 236  Q
    ||||||||||||||||||  || ||||    ||||||||| |||||||||  ||||||| | ||||||  |||| |||||||||||||||| ||||    
T  11087573 aaaagtgaatcataccttgaggatgaaa---caagttcacccttatataggtgcgcgttgagcataactgtctccggattatgcggcgtgtaatta 11087665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 42 - 148
Target Start/End: Complemental strand, 31295654 - 31295548
Alignment:
Q  42 gagtcttcgtggtggaacgaaaggtgcctgcagacatgtaagcagttcgacactcaagtcagtaaatgaactgataaaatgtgtgttgaaaatgttgtga 141  Q
    ||||||||| ||||||||||||| ||||||||| ||||| |||| |||||| |||||||||||||   |||||| |||  ||||||   || ||||||||    
T  31295654 gagtcttcgaggtggaacgaaagttgcctgcaggcatgttagcacttcgacgctcaagtcagtaatgaaactgagaaagagtgtgtatgaagtgttgtga 31295555  T
Q  142 aaagtga 148  Q
    |||||||    
T  31295554 aaagtga 31295548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 95 - 242
Target Start/End: Original strand, 16130993 - 16131137
Alignment:
Q  95 tcaagtcagtaaatgaactgataaaatgtgtgttgaaaatgttgtgaaaagtgaatcataccttaggggtgaagaagcaagttcactcttatatagacgc 194  Q
    ||||||||||||  |||||||||||  ||||   |||| |||||||||| ||||||||||||||  ||||   ||| |||||| || ||||||||| |||    
T  16130993 tcaagtcagtaatggaactgataaagagtgtacagaaagtgttgtgaaacgtgaatcataccttgagggt---gaaacaagtttacccttatataggcgc 16131089  T
Q  195 gcgttcaacataaccatctctggattatgcggcgtgtgattagagatg 242  Q
    || || | ||||||  |||| |||||||| ||| ||||||||| ||||    
T  16131090 gcattaagcataactgtctccggattatgtggcatgtgattagggatg 16131137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 52 - 168
Target Start/End: Original strand, 19305446 - 19305562
Alignment:
Q  52 ggtggaacgaaaggtgcctgcagacatgtaagcagttcgacactcaagtcagtaaatgaactgataaaatgtgtgttgaaaatgttgtgaaaagtgaatc 151  Q
    ||||||||||||||| |||  || || || |||| ||  || |||||||||||||  |||||||  ||  |||||| |||| ||||||||||||||||||    
T  19305446 ggtggaacgaaaggttcctagaggcacgttagcacttaaacgctcaagtcagtaatggaactgagtaagagtgtgtagaaagtgttgtgaaaagtgaatc 19305545  T
Q  152 ataccttaggggtgaag 168  Q
    |||||||  ||||||||    
T  19305546 ataccttgagggtgaag 19305562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 117 - 237
Target Start/End: Original strand, 33596908 - 33597025
Alignment:
Q  117 aaaatgtgtgttgaaaatgttgtgaaaagtgaatcataccttaggggtgaagaagcaagttcactcttatatagacgcgcgttcaacataaccatctctg 216  Q
    |||| |||||| |||| |||||||||||  ||||||||||||   |  || ||||||||||||||||||||||| ||||| || | |||||   || | |    
T  33596908 aaaaagtgtgtagaaagtgttgtgaaaatggaatcatacctt---gaggatgaagcaagttcactcttatataggcgcgctttgagcataattgtcaccg 33597004  T
Q  217 gattatgcggcgtgtgattag 237  Q
    ||||||||||||| |||||||    
T  33597005 gattatgcggcgtatgattag 33597025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 91 - 168
Target Start/End: Complemental strand, 3404932 - 3404855
Alignment:
Q  91 acactcaagtcagtaaatgaactgataaaatgtgtgttgaaaatgttgtgaaaagtgaatcataccttaggggtgaag 168  Q
    ||||| ||||||||||  ||||||| |||  |||||| |||| ||||||||||| |||||||||||||  ||||||||    
T  3404932 acacttaagtcagtaatggaactgagaaagagtgtgtagaaagtgttgtgaaaaatgaatcataccttgagggtgaag 3404855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 41 - 106
Target Start/End: Complemental strand, 22497418 - 22497353
Alignment:
Q  41 tgagtcttcgtggtggaacgaaaggtgcctgcagacatgtaagcagttcgacactcaagtcagtaa 106  Q
    |||||||||| | ||||||||||||||| |||||||| || |||| | |||| |||||||||||||    
T  22497418 tgagtcttcgcgatggaacgaaaggtgcttgcagacacgttagcactccgacgctcaagtcagtaa 22497353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 41 - 158
Target Start/End: Original strand, 30680963 - 30681080
Alignment:
Q  41 tgagtcttcgtggtggaacgaaaggtgcctgcagacatgtaagcagttcgacactcaagtcagtaaatgaactgataaaatgtgtgttgaaaatgttgtg 140  Q
    |||||||||| ||||| |||||||||| |||||  || || |||| | | || |||||||||||||   ||||||||||  | |||| |||  | |||||    
T  30680963 tgagtcttcgcggtgggacgaaaggtgtctgcaatcacgttagcactccaacgctcaagtcagtaatgaaactgataaagagcgtgtagaatgtattgtg 30681062  T
Q  141 aaaagtgaatcatacctt 158  Q
    ||||||||||||||||||    
T  30681063 aaaagtgaatcatacctt 30681080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 94 - 158
Target Start/End: Complemental strand, 689924 - 689860
Alignment:
Q  94 ctcaagtcagtaaatgaactgataaaatgtgtgttgaaaatgttgtgaaaagtgaatcatacctt 158  Q
    |||||||||||||  ||||||| ||| |||||||  ||| |||||||||||||||||| ||||||    
T  689924 ctcaagtcagtaatggaactgagaaagtgtgtgtataaagtgttgtgaaaagtgaatcgtacctt 689860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 110 - 158
Target Start/End: Complemental strand, 15480392 - 15480344
Alignment:
Q  110 aactgataaaatgtgtgttgaaaatgttgtgaaaagtgaatcatacctt 158  Q
    |||||| |||| |||||| |||| |||||||||||||||||||||||||    
T  15480392 aactgagaaaaagtgtgtagaaagtgttgtgaaaagtgaatcatacctt 15480344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 53 - 238
Target Start/End: Complemental strand, 12424422 - 12424240
Alignment:
Q  53 gtggaacgaaaggtgcctgcagacatgtaagcagttcgacactcaagtcagtaaatgaactgataaaatgtgtgttgaaaatgttgtgaaaagtgaatca 152  Q
    |||||||||||||||||||||| || || |||| | ||||| ||||||||||||  ||||||| | |    || |  ||| ||||||||||||||         
T  12424422 gtggaacgaaaggtgcctgcaggcacgttagcactacgacaatcaagtcagtaatggaactgagagagaaagtctaaaaagtgttgtgaaaagtgttgtg 12424323  T
Q  153 taccttaggggtgaagaagcaagttcactcttatatagacgcgcgttcaacataaccatctctggattatgcggcgtgtgattaga 238  Q
    ||||||| ||||   ||||||||||||| ||||||||| |||||     |||||||| |||| || ||||||||| ||||||||||    
T  12424322 taccttaagggt---gaagcaagttcacccttatataggcgcgctcgtgacataaccgtctccgggttatgcggcatgtgattaga 12424240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 168 - 237
Target Start/End: Complemental strand, 19277072 - 19277004
Alignment:
Q  168 gaagcaagttcactcttatatagacgcgcgttcaacataaccatctctggattatgcggcgtgtgattag 237  Q
    ||||||||||||| ||||||||| ||||| ||   ||||||| ||||||| ||||||||||| |||||||    
T  19277072 gaagcaagttcacccttatataggcgcgctttggtcataaccgtctctgg-ttatgcggcgtatgattag 19277004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 168 - 237
Target Start/End: Complemental strand, 27860944 - 27860875
Alignment:
Q  168 gaagcaagttcactcttatatagacgcgcgttcaacataaccatctctggattatgcggcgtgtgattag 237  Q
    ||||||||||||| ||| ||||| |||| |||   ||||||| |||| || |||||||||||||||||||    
T  27860944 gaagcaagttcacccttttataggcgcgtgttggccataaccgtctccgggttatgcggcgtgtgattag 27860875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 3 - 92
Target Start/End: Complemental strand, 31423986 - 31423897
Alignment:
Q  3 ctccggtgagatggtaacggaatctggtacgacgactttgagtcttcgtggtggaacgaaaggtgcctgcagacatgtaagcagttcgac 92  Q
    |||||||| ||  |||||||  || |||||| | || |||| |||||||||||||||||||||| | |||||||| || |||| ||||||    
T  31423986 ctccggtgtgacagtaacggtttccggtacggcaacgttgaatcttcgtggtggaacgaaaggtccttgcagacacgttagcacttcgac 31423897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 43 - 168
Target Start/End: Original strand, 34187272 - 34187396
Alignment:
Q  43 agtcttcgtggtggaacgaaaggtgcctgcagacatgtaagcagttcgacactcaagtcagtaaatgaactgataaaatgtgtgttgaaaatgttgtgaa 142  Q
    |||||| | |||||||||||||||| ||||||||| || ||||   | ||||||||||||||||  ||||||| |||  ||||||  ||| ||| ||| |    
T  34187272 agtctttgcggtggaacgaaaggtgtctgcagacacgttagcacaccaacactcaagtcagtaatggaactgagaaagagtgtgtaaaaagtgtggtg-a 34187370  T
Q  143 aagtgaatcataccttaggggtgaag 168  Q
    ||||||||  ||||||  ||||||||    
T  34187371 aagtgaattgtaccttgagggtgaag 34187396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 50 - 154
Target Start/End: Original strand, 14080464 - 14080567
Alignment:
Q  50 gtggtggaacgaaaggtgcctgcagacatgtaagcagttcgacactcaagtcagtaaatgaactgataaaatgtgtgttgaaaatgttgtgaaaagtgaa 149  Q
    ||||||| ||||||||||||| ||| ||  | |||| |  ||| ||||||| ||||| |||||||| |||  |||||| | || ||||||||||||||||    
T  14080464 gtggtgggacgaaaggtgcctacaggcacattagcactctgacgctcaagttagtaa-tgaactgagaaagagtgtgtagtaagtgttgtgaaaagtgaa 14080562  T
Q  150 tcata 154  Q
    |||||    
T  14080563 tcata 14080567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0140 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: scaffold0140
Description:

Target: scaffold0140; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 53 - 237
Target Start/End: Original strand, 6281 - 6462
Alignment:
Q  53 gtggaacgaaaggtgcctgcagacatgtaagcagttcgacactcaagtcagtaaatgaactgataaaatgtgtgttgaaaatgttgtgaaaagtgaatca 152  Q
    ||||||| |||||||  ||||| || || |||| |||||  |||||||||||||  ||||||| |||  |||||| |||| ||||||||||||||| ||     
T  6281 gtggaacaaaaggtgtttgcaggcacgttagcacttcgaagctcaagtcagtaatggaactgagaaatagtgtgtagaaagtgttgtgaaaagtgagtcg 6380  T
Q  153 taccttaggggtgaagaagcaagttcactcttatatagacgcgcgttcaacataaccatctctggattatgcggcgtgtgattag 237  Q
    ||||||  | ||   ||||||||||||  ||||||||| ||| |||| ||||||||| |||| || ||| | || ||||||||||    
T  6381 taccttgagcgt---gaagcaagttcatccttatataggcgcacgttgaacataaccgtctccgggttacgtggtgtgtgattag 6462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 41 - 167
Target Start/End: Original strand, 22903064 - 22903190
Alignment:
Q  41 tgagtcttcgtggtggaacgaaaggtgcctgcagacatgtaagcagttcgacactcaagtcagtaaatgaactgataaaatgtgtgttgaaaatgttgtg 140  Q
    ||||| |||| |||||||||||||||    | || ||||| |||| ||| || |||||||||||||  ||||||| |||  |||||| |||| |||||||    
T  22903064 tgagttttcgcggtggaacgaaaggttttcgtaggcatgttagcacttcaacgctcaagtcagtaatggaactgagaaagagtgtgtagaaagtgttgtg 22903163  T
Q  141 aaaagtgaatcataccttaggggtgaa 167  Q
    ||||||||||||||||||  |||||||    
T  22903164 aaaagtgaatcataccttgagggtgaa 22903190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 42 - 168
Target Start/End: Complemental strand, 27083356 - 27083231
Alignment:
Q  42 gagtcttcgtggtggaacgaaaggtgcctgcagacatgtaagcagttcgacactcaagtcagtaaatgaactgataaaatgtgtgttgaaaatgttgtga 141  Q
    ||||||||| ||| |||||||| ||| ||||||||| || |||| | | ||||||||||||||||   |||||  |||  |||||| |||| ||||||||    
T  27083356 gagtcttcgcggtagaacgaaatgtgtctgcagacacgttagcactccaacactcaagtcagtaaga-aactgtgaaagagtgtgtagaaagtgttgtga 27083258  T
Q  142 aaagtgaatcataccttaggggtgaag 168  Q
    |||||||||||||||||  ||||||||    
T  27083257 aaagtgaatcataccttgagggtgaag 27083231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 61 - 199
Target Start/End: Complemental strand, 26994706 - 26994571
Alignment:
Q  61 aaaggtgcctgcagacatgtaagcagttcgacactcaagtcagtaaatgaactgataaaatgtgtgttgaaaatgttgtgaaaagtgaatcataccttag 160  Q
    ||||||| || |||||| || |||| | |||| |||||||||||||  ||| ||| |||  |||| | |||  ||||||||||||||||||||||||| |    
T  26994706 aaaggtgtcttcagacacgttagcactccgacgctcaagtcagtaatggaattgagaaagagtgtttagaaggtgttgtgaaaagtgaatcataccttgg 26994607  T
Q  161 gggtgaagaagcaagttcactcttatatagacgcgcgtt 199  Q
    ||||   |||||||| |||| ||||||||| ||||||||    
T  26994606 gggt---gaagcaaggtcacccttatataggcgcgcgtt 26994571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 44 - 237
Target Start/End: Original strand, 22865735 - 22865925
Alignment:
Q  44 gtcttcgtggtggaacgaaaggtgcctgcagacatgtaagcagttcgacactcaagtcagtaaatgaactgataaaatgtgtgttgaaaatgttgtgaaa 143  Q
    |||||||  |||||||||||||||| |||||  | || |||| || ||| ||||||| |||||  ||||||| |||| ||||||   |||||||||||||    
T  22865735 gtcttcgcagtggaacgaaaggtgcatgcaggtacgttagcactttgacgctcaagttagtaatggaactgagaaaaagtgtgtaagaaatgttgtgaaa 22865834  T
Q  144 agtgaatcataccttaggggtgaagaagcaagttcactcttatatagacgcgcgttcaacataaccatctctggattatgcggcgtgtgattag 237  Q
    |||||    ||||||  ||||   ||||||||||||| ||||||||| || |||||   ||||||| | || |||||||||| | |||||||||    
T  22865835 agtgatgtgtaccttgagggt---gaagcaagttcacccttatataggcgtgcgttggccataaccgtttccggattatgcgacttgtgattag 22865925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 134 - 242
Target Start/End: Complemental strand, 32418513 - 32418408
Alignment:
Q  134 tgttgtgaaaagtgaatcataccttaggggtgaagaagcaagttcactcttatatagacgcgcgttcaacataaccatctctggattatgcggcgtgtga 233  Q
    ||||||||| |||||||||||||||   |  || ||||||||||||| ||| |||||||| ||||| | | ||||  |||| || |||||||||||||||    
T  32418513 tgttgtgaagagtgaatcatacctt---gaggatgaagcaagttcacccttgtatagacgtgcgttaagcttaactgtctccgggttatgcggcgtgtga 32418417  T
Q  234 ttagagatg 242  Q
    |||| ||||    
T  32418416 ttagggatg 32418408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 168 - 237
Target Start/End: Complemental strand, 31202371 - 31202302
Alignment:
Q  168 gaagcaagttcactcttatatagacgcgcgttcaacataaccatctctggattatgcggcgtgtgattag 237  Q
    ||||||||||||| ||||||||| ||| ||||   ||||||| ||||| | |||||||||||||||||||    
T  31202371 gaagcaagttcacccttatataggcgcacgttggtcataaccgtctctaggttatgcggcgtgtgattag 31202302  T

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Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 173 - 237
Target Start/End: Original strand, 24546442 - 24546506
Alignment:
Q  173 aagttcactcttatatagacgcgcgttcaacataaccatctctggattatgcggcgtgtgattag 237  Q
    |||||||| ||||||||| ||||||||   ||||||| |||| || |||||||||||||||||||    
T  24546442 aagttcacccttatataggcgcgcgttagccataaccgtctccgggttatgcggcgtgtgattag 24546506  T

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Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 40 - 144
Target Start/End: Complemental strand, 19993286 - 19993182
Alignment:
Q  40 ttgagtcttcgtggtggaacgaaaggtgcctgcagacatgtaagcagttcgacactcaagtcagtaaatgaactgataaaatgtgtgttgaaaatgttgt 139  Q
    ||||||||||| ||||| |  |||||| | ||||||||  | |||||| | | ||||||||||||||  ||||||| |||  | ||||||||| ||||||    
T  19993286 ttgagtcttcgcggtgggaaaaaaggttcttgcagacacattagcagtccaatactcaagtcagtaatggaactgagaaagagcgtgttgaaagtgttgt 19993187  T
Q  140 gaaaa 144  Q
    |||||    
T  19993186 gaaaa 19993182  T

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Target: scaffold0263 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0263
Description:

Target: scaffold0263; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 41 - 148
Target Start/End: Complemental strand, 20617 - 20510
Alignment:
Q  41 tgagtcttcgtggtggaacgaaaggtgcctgcagacatgtaagcagttcgacactcaagtcagtaaatgaactgataaaatgtgtgttgaaaatgttgtg 140  Q
    |||| ||||| ||||||||||||||||| | || |||||| |||| |  ||| ||||||||| |||| ||||||| |||  |||||| ||||||||| ||    
T  20617 tgaggcttcgcggtggaacgaaaggtgcttacaaacatgttagcactctgacgctcaagtcactaaaggaactgagaaagagtgtgtagaaaatgttatg 20518  T
Q  141 aaaagtga 148  Q
    ||||||||    
T  20517 aaaagtga 20510  T

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Target: scaffold0174 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: scaffold0174
Description:

Target: scaffold0174; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 25 - 106
Target Start/End: Complemental strand, 29412 - 29331
Alignment:
Q  25 tctggtacgacgactttgagtcttcgtggtggaacgaaaggtgcctgcagacatgtaagcagttcgacactcaagtcagtaa 106  Q
    |||||||||||||   |||||||||| ||||||||||||||||| || || ||||| |||| | | || |||||||||||||    
T  29412 tctggtacgacgatgatgagtcttcgcggtggaacgaaaggtgcatggagtcatgttagcactccaacgctcaagtcagtaa 29331  T

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Target: scaffold0023 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: scaffold0023
Description:

Target: scaffold0023; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 47 - 168
Target Start/End: Complemental strand, 95924 - 95803
Alignment:
Q  47 ttcgtggtggaacgaaaggtgcctgcagacatgtaagcagttcgacactcaagtcagtaaatgaactgataaaatgtgtgttgaaaatgttgtgaaaagt 146  Q
    |||| ||||| || |||||| ||||||| || || | || ||| || ||||||| |||||  ||||||| |||  ||| || |||| |||||||||||||    
T  95924 ttcgcggtgggacaaaaggttcctgcaggcacgttaccacttcaacgctcaagttagtaatggaactgagaaagagtgcgtagaaagtgttgtgaaaagt 95825  T
Q  147 gaatcataccttaggggtgaag 168  Q
    ||||||||||||  ||||||||    
T  95824 gaatcataccttcagggtgaag 95803  T

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Target: scaffold0360 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0360
Description:

Target: scaffold0360; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 94 - 168
Target Start/End: Original strand, 13946 - 14020
Alignment:
Q  94 ctcaagtcagtaaatgaactgataaaatgtgtgttgaaaatgttgtgaaaagtgaatcataccttaggggtgaag 168  Q
    |||||||||||||   |||||| |||  |||||| |||| |||||||| ||||||||||||||||  ||||||||    
T  13946 ctcaagtcagtaatgaaactgagaaagagtgtgtagaaagtgttgtgagaagtgaatcataccttgagggtgaag 14020  T

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Target: scaffold0101 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0101
Description:

Target: scaffold0101; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 41 - 115
Target Start/End: Complemental strand, 10838 - 10764
Alignment:
Q  41 tgagtcttcgtggtggaacgaaaggtgcctgcagacatgtaagcagttcgacactcaagtcagtaaatgaactga 115  Q
    |||||||||||||||||| |||||||| ||| || ||||| |||| | ||||  ||||||||||||  |||||||    
T  10838 tgagtcttcgtggtggaatgaaaggtgtctgtaggcatgttagcactccgacgttcaagtcagtaatggaactga 10764  T

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Target: scaffold0054 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 129 - 199
Target Start/End: Complemental strand, 68834 - 68767
Alignment:
Q  129 gaaaatgttgtgaaaagtgaatcataccttaggggtgaagaagcaagttcactcttatatagacgcgcgtt 199  Q
    |||| |||||||||||||||||||||||||  |||   ||||||||| |||| ||||||||| | ||||||    
T  68834 gaaagtgttgtgaaaagtgaatcataccttgaggg---agaagcaaggtcacccttatataggcacgcgtt 68767  T

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