View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8175_low_12 (Length: 538)
Name: NF8175_low_12
Description: NF8175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8175_low_12 |
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Alignment Details
Target: chr5 (Bit Score: 319; Significance: 1e-180; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 193 - 523
Target Start/End: Original strand, 41746888 - 41747218
Alignment:
| Q |
193 |
attgatctgttttgctgttgtgccttttccttttgtgcctcggtgttcatcttcaggttcttggtgcattttgtgaggcttcggttttggggttttattc |
292 |
Q |
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| T |
41746888 |
attgatctgttttgccgttgtgccttttccttttgtgcctcggtgttcatcttcaggttcttggtgcattttgtgaggcttcggtgttggggttttattc |
41746987 |
T |
|
| Q |
293 |
agttttttgggactgcttttcattatataagtttcttgtgtctaatttatagtgtgcaagttttgcggtggtatgtttagctgtcaatttgacaacatta |
392 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41746988 |
agttttttgggactgcttttcattatataagtttcttgtgtctaatttatagtgtgcaagttttgcggtggtatgtttagctgtcaatttgacaacatta |
41747087 |
T |
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| Q |
393 |
gctccaacttccaagtgcgtagataaagtctttatgtgcttgcttgaattttagtttgagctgctgctatattaacctggattttggcttggctacggtg |
492 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
41747088 |
gctccaacttccaagtgcgtagataaagtctttatgtgcttgcttgaattttagtttgagttgctgctatattaacctggattttggcttggctacggtg |
41747187 |
T |
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| Q |
493 |
tcctattagtcttctgctgttgtgtattttg |
523 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
41747188 |
tcctattagtcttctgctgttgtgtattttg |
41747218 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 16 - 124
Target Start/End: Original strand, 41746783 - 41746891
Alignment:
| Q |
16 |
atgaaatgtttaacatctgagtgtactcaactattctgcataatcttgtggaaattgtggagagctaggaattgtgttgtcttcaatcacctattagcta |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41746783 |
atgaaatgtttaacatctgagtgtactcaactattctgcataatcttgtggaaattgtggagagctaggaattgtgttgtcttcaatcacctattagcta |
41746882 |
T |
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| Q |
116 |
accccattg |
124 |
Q |
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||||||||| |
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| T |
41746883 |
accccattg |
41746891 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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