View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8175_low_13 (Length: 537)
Name: NF8175_low_13
Description: NF8175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8175_low_13 |
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Alignment Details
Target: chr2 (Bit Score: 413; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 413; E-Value: 0
Query Start/End: Original strand, 1 - 519
Target Start/End: Complemental strand, 25414271 - 25413749
Alignment:
| Q |
1 |
ttatgcaatcacagatttgtcggatttcaaccattgaatgaaattctggctcctacagaatctattcatgttatagggtttagggtttagggtattgtaa |
100 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| ||||||||||||||||||||||||||||||| | |
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| T |
25414271 |
ttattcaatcacagatttgtcggatttcaaccattgaatgaaattctggctgctacataatctatt-atgttatagggtttagggtttagggtattgtta |
25414173 |
T |
|
| Q |
101 |
actaagtagctattattatagaagatgcatttttgccataagaaaattattacaacactgataatattaacttactcagggaatgcaaaagaacctctac |
200 |
Q |
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||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25414172 |
actaagttgctattattattatagatgcatttttgccataagaaaattattacaacactgataatattaacttactcagggaatgcaaaagaacctctac |
25414073 |
T |
|
| Q |
201 |
tgccttcagattgattagagttccttgaattattagacaccaaccgaccatcttcaatctcctctttctggcatgatctccctatgttgtctctgtgttg |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
25414072 |
tgccttcagattgattagagttccttgaattattagacaccaaccgaccatcttcaatctcctctttctggcatgatcttcctatgttgtctctgtgttg |
25413973 |
T |
|
| Q |
301 |
agttgaactcaaacttatggtctcttttgcttcatcctataggccaaaagaaaattcaaaat-nnnnnnnnnntagtatgattgatgacactaatgcata |
399 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||| |||||||||||||||||||||| |
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| T |
25413972 |
agttgaactcaaacttatggtctcttttgcttcatcctataggccaaaagaaagttcaaaataaaaaaaaaaatagtttgattgatgacactaatgcata |
25413873 |
T |
|
| Q |
400 |
aaacatag----aaaaaatatttacggtggcgacgaacctctttgataggggtcaagtaaactatgtcatgttgatcagtatgatgctggtttgcatttg |
495 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
25413872 |
aaacatagaaaaaaaaaatatttacggtggcgacgaacctctttgataggggtcaagtaaactatgtcatgttgatcagtatcatgctggtttgcatttg |
25413773 |
T |
|
| Q |
496 |
atatatgcttctctatgtgttggt |
519 |
Q |
| |
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|||||||||||||||||||||||| |
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| T |
25413772 |
atatatgcttctctatgtgttggt |
25413749 |
T |
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