View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8175_low_17 (Length: 493)

Name: NF8175_low_17
Description: NF8175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8175_low_17
NF8175_low_17
[»] chr6 (10 HSPs)
chr6 (1-463)||(9364803-9365266)
chr6 (303-364)||(28063007-28063068)
chr6 (298-353)||(2979649-2979704)
chr6 (303-364)||(28064662-28064725)
chr6 (298-353)||(29452436-29452491)
chr6 (415-461)||(12194155-12194201)
chr6 (282-362)||(22868513-22868594)
chr6 (315-362)||(9290665-9290713)
chr6 (298-342)||(10740644-10740688)
chr6 (282-353)||(21862750-21862822)
[»] chr3 (6 HSPs)
chr3 (108-272)||(9579218-9579383)
chr3 (396-462)||(16462914-16462980)
chr3 (396-462)||(22820957-22821023)
chr3 (281-353)||(42531350-42531423)
chr3 (298-345)||(814379-814426)
chr3 (284-362)||(50294708-50294787)
[»] chr4 (5 HSPs)
chr4 (1-274)||(14863897-14864164)
chr4 (400-462)||(54148222-54148284)
chr4 (302-353)||(14458601-14458652)
chr4 (396-462)||(24225999-24226065)
chr4 (282-342)||(16543433-16543493)
[»] chr1 (13 HSPs)
chr1 (108-209)||(34740893-34740996)
chr1 (309-462)||(3774329-3774480)
chr1 (394-462)||(2071626-2071694)
chr1 (394-462)||(2075156-2075224)
chr1 (303-362)||(15630145-15630205)
chr1 (394-455)||(10354318-10354379)
chr1 (230-275)||(11951712-11951757)
chr1 (303-342)||(15629346-15629385)
chr1 (416-461)||(11993575-11993620)
chr1 (313-353)||(30435670-30435708)
chr1 (425-461)||(9167904-9167940)
chr1 (282-342)||(9168421-9168481)
chr1 (298-362)||(28665032-28665096)
[»] chr5 (3 HSPs)
chr5 (396-462)||(27315199-27315265)
chr5 (416-459)||(9512408-9512451)
chr5 (281-362)||(24137650-24137731)
[»] chr8 (7 HSPs)
chr8 (274-364)||(43516176-43516267)
chr8 (396-462)||(16578880-16578946)
chr8 (416-462)||(2098509-2098555)
chr8 (396-462)||(5616876-5616942)
chr8 (315-353)||(16578793-16578831)
chr8 (304-353)||(20093300-20093347)
chr8 (394-462)||(24726622-24726690)
[»] scaffold0325 (1 HSPs)
scaffold0325 (303-352)||(14525-14574)
[»] chr7 (8 HSPs)
chr7 (284-362)||(15614230-15614309)
chr7 (298-344)||(5763702-5763748)
chr7 (396-462)||(21814374-21814440)
chr7 (396-457)||(11828004-11828065)
chr7 (298-342)||(30867176-30867220)
chr7 (274-344)||(39349372-39349442)
chr7 (295-339)||(46963055-46963099)
chr7 (303-362)||(46964417-46964477)
[»] chr2 (5 HSPs)
chr2 (396-462)||(1172862-1172927)
chr2 (309-364)||(42633712-42633767)
chr2 (396-462)||(29409169-29409235)
chr2 (401-462)||(34172072-34172133)
chr2 (320-353)||(37791303-37791336)


Alignment Details
Target: chr6 (Bit Score: 379; Significance: 0; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 1 - 463
Target Start/End: Original strand, 9364803 - 9365266
Alignment:
Q  1 aatttgaatggaaggttctcttctgttattgaataaacacaaaatggcnnnnnnnaaatagccttacgctagaaccaccacacgtaaatgtgggttaact 100  Q
    |||||||| ||||||||||||||| |||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||    
T  9364803 aatttgaagggaaggttctcttctattattgaataaacacaaaatggctttttttaaatagccttacgctagaaccaccacacgtaaatgtgggttaact 9364902  T
Q  101 actgactaaacttagccacaaagagggaaatatcttaatgactaaatcaaactaacagcaagttagcaacaattcctaatttaaatgata-caaaacaac 199  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||| |||||||||    
T  9364903 actgaccaaacttagccacaaagagggaaatatcttaatgactaaatcaaactaacagcaagtcaacaacaattcctaatttaaatgataacaaaacaac 9365002  T
Q  200 cttacttccttattaatagaatttattaggcagaaagacaaaacaaataaaaacaaacagccactagcttcaacacaatgaaggctaggatttcctataa 299  Q
    |||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||    
T  9365003 cttacttccttattaatataatttattagacagaaagacaaaacaaataaaaacaaacagccactaacttcaacataatgaaggctaggatttcctataa 9365102  T
Q  300 taccaataacttaatattacaaaaggttacaagagaatatatataaaacctaatcgaatctaaacctaatgggtccaatgacatagacccaataatttta 399  Q
    || ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||    
T  9365103 tatcaataacttaacattacaaaaggttacaagagaatatatataaaacctaatcgaatctaaacctagtgggtccaatgacatagatccaataatttta 9365202  T
Q  400 ttatctaacacatcctctcaaattcatgatgcatcaacaagaagtattatgagtttgtcaaacg 463  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9365203 ttatctaacacctcctctcaaattcatgatgcatcaacaagaagtattatgagtttgtcaaacg 9365266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 303 - 364
Target Start/End: Original strand, 28063007 - 28063068
Alignment:
Q  303 caataacttaatattacaaaaggttacaagagaatatatataaaacctaatcgaatctaaac 364  Q
    ||||| ||||| ||||||||||||||| ||||||||||||||||| ||||| || |||||||    
T  28063007 caatagcttaacattacaaaaggttactagagaatatatataaaatctaatggactctaaac 28063068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 298 - 353
Target Start/End: Complemental strand, 2979704 - 2979649
Alignment:
Q  298 aataccaataacttaatattacaaaaggttacaagagaatatatataaaacctaat 353  Q
    |||| ||||| ||||| |||||||||| |||||||||||||| |||||||||||||    
T  2979704 aatatcaatagcttaacattacaaaagattacaagagaatatgtataaaacctaat 2979649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 303 - 364
Target Start/End: Original strand, 28064662 - 28064725
Alignment:
Q  303 caataacttaatattacaaaaggttacaagagaatat--atataaaacctaatcgaatctaaac 364  Q
    ||||| ||||| ||||||||||||||| |||||||||  |||||||||||||| || |||||||    
T  28064662 caatagcttaacattacaaaaggttactagagaatataaatataaaacctaatggactctaaac 28064725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 298 - 353
Target Start/End: Original strand, 29452436 - 29452491
Alignment:
Q  298 aataccaataacttaatattacaaaaggttacaagagaatatatataaaacctaat 353  Q
    |||||||||||||||| ||| |||||| ||||  || |||||||||||||||||||    
T  29452436 aataccaataacttaaaatttcaaaagattaccggataatatatataaaacctaat 29452491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 415 - 461
Target Start/End: Original strand, 12194155 - 12194201
Alignment:
Q  415 tctcaaattcatgatgcatcaacaagaagtattatgagtttgtcaaa 461  Q
    ||||||||||| ||  ||||||||||||| |||||||||||||||||    
T  12194155 tctcaaattcacgactcatcaacaagaagaattatgagtttgtcaaa 12194201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 282 - 362
Target Start/End: Complemental strand, 22868594 - 22868513
Alignment:
Q  282 ggctaggatttcctataataccaataacttaatattacaaaaggttacaagagaatatat-ataaaacctaatcgaatctaa 362  Q
    ||||||| |||| || |||| ||||| | ||| ||||||||| |||| |||||||||||| |||||||||||| || |||||    
T  22868594 ggctagggtttcatagaatatcaatagcataacattacaaaaagttataagagaatatataataaaacctaatggactctaa 22868513  T

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Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 315 - 362
Target Start/End: Original strand, 9290665 - 9290713
Alignment:
Q  315 attacaaaaggttacaagagaatatat-ataaaacctaatcgaatctaa 362  Q
    |||||||||||||| |||||||||||| |||||||||||| || |||||    
T  9290665 attacaaaaggttataagagaatatataataaaacctaatggactctaa 9290713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 298 - 342
Target Start/End: Complemental strand, 10740688 - 10740644
Alignment:
Q  298 aataccaataacttaatattacaaaaggttacaagagaatatata 342  Q
    |||| ||||||||||||||||||||| ||||  ||||||||||||    
T  10740688 aatatcaataacttaatattacaaaatgttatgagagaatatata 10740644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 282 - 353
Target Start/End: Complemental strand, 21862822 - 21862750
Alignment:
Q  282 ggctaggatttcctataataccaataacttaatattacaaaaggttacaagagaatatat-ataaaacctaat 353  Q
    ||||||| |||| || |||| ||||  ||||||||||||||  ||||| ||||||||||| ||||||||||||    
T  21862822 ggctagggtttcatagaataacaattgcttaatattacaaagagttactagagaatatataataaaacctaat 21862750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 83; Significance: 4e-39; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 108 - 272
Target Start/End: Original strand, 9579218 - 9579383
Alignment:
Q  108 aaacttagccacaaagagggaaa-tatcttaatgactaaatcaaactaacagcaagttagcaacaattcctaatttaaatgata-caaaacaaccttact 205  Q
    ||||||||| ||||||||||||| ||||||||||||||||||||||||| || |||| ||||||  |||||||| |||| |||| |||||||||||||||    
T  9579218 aaacttagctacaaagagggaaaatatcttaatgactaaatcaaactaaaag-aagtcagcaacggttcctaatgtaaaggataacaaaacaaccttact 9579316  T
Q  206 tccttattaatagaatttattaggcagaaagacaaaacaaataaaaacaaacagccactagcttcaa 272  Q
    |||| |||||||| ||||||||| ||||||  ||||||||||||||||||||||  |||| ||||||    
T  9579317 tcctaattaataggatttattagacagaaaagcaaaacaaataaaaacaaacagttactaacttcaa 9579383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 396 - 462
Target Start/End: Complemental strand, 16462980 - 16462914
Alignment:
Q  396 tttattatctaacacatcctctcaaattcatgatgcatcaacaagaagtattatgagtttgtcaaac 462  Q
    ||||||||||||| | | | |||||| |||||||||| |||||||||| ||| ||||||||||||||    
T  16462980 tttattatctaacgcctaccctcaaactcatgatgcaacaacaagaagcattgtgagtttgtcaaac 16462914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 396 - 462
Target Start/End: Original strand, 22820957 - 22821023
Alignment:
Q  396 tttattatctaacacatcctctcaaattcatgatgcatcaacaagaagtattatgagtttgtcaaac 462  Q
    |||||||||||| || | |||||||| | ||||||||| ||||||||| ||| ||||||||||||||    
T  22820957 tttattatctaaaacttactctcaaactaatgatgcataaacaagaagcattgtgagtttgtcaaac 22821023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 281 - 353
Target Start/End: Complemental strand, 42531423 - 42531350
Alignment:
Q  281 aggctaggatttcctataataccaataacttaatattacaaaaggttacaagagaatatat-ataaaacctaat 353  Q
    |||||||| |||| || |||| ||||  ||||| |||||||||||||| |||||||||||| ||||||||||||    
T  42531423 aggctagggtttcatacaatatcaatggcttaacattacaaaaggttataagagaatatataataaaacctaat 42531350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 298 - 345
Target Start/End: Original strand, 814379 - 814426
Alignment:
Q  298 aataccaataacttaatattacaaaaggttacaagagaatatatataa 345  Q
    |||||||||| ||||| ||||||| |||||| ||||||||||||||||    
T  814379 aataccaatagcttaacattacaagaggttataagagaatatatataa 814426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 284 - 362
Target Start/End: Complemental strand, 50294787 - 50294708
Alignment:
Q  284 ctaggatttcctataataccaataacttaatattacaaaaggttacaagagaatatat-ataaaacctaatcgaatctaa 362  Q
    ||||| ||||| ||||||  ||| |||||||||||||||| |||| |||| ||||||| |||||||||||| || |||||    
T  50294787 ctagggtttccaataatattaattacttaatattacaaaatgttataagataatatataataaaacctaatggactctaa 50294708  T

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Target: chr4 (Bit Score: 82; Significance: 2e-38; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 1 - 274
Target Start/End: Complemental strand, 14864164 - 14863897
Alignment:
Q  1 aatttgaatggaaggttctcttctgttattgaataaacacaaaatggcnnnnnnnaaatagccttacgctagaaccaccacacgtaaatgtgggttaact 100  Q
    |||||||| |||| || ||||||||||||||||  |||||||||||||       |||||||||||| |    || ||||||  |||| |||||||| |     
T  14864164 aatttgaagggaaagtactcttctgttattgaa--aacacaaaatggcttttct-aaatagccttacac----acgaccacatttaaacgtgggttagcc 14864072  T
Q  101 actgactaaacttagccacaaagagggaaa-tatcttaatgactaaatcaaactaacagcaagttagcaacaattcctaatttaaatgata-caaaacaa 198  Q
    ||| || ||||||||| ||||||||||||| ||||||||||||||||||||||||| || |||| ||||||  ||||||||||||| |||| ||||||||    
T  14864071 actaacaaaacttagctacaaagagggaaaatatcttaatgactaaatcaaactaaaag-aagtcagcaacggttcctaatttaaaggataacaaaacaa 14863973  T
Q  199 ccttacttccttattaatagaatttattaggcagaaagacaaaacaaataaaaacaaacagccactagcttcaaca 274  Q
    ||||||||| | |||||||  ||||||||| ||||||  |||||||||||||||||||| |  |||| ||||||||    
T  14863972 ccttacttcttaattaatatgatttattagacagaaaagcaaaacaaataaaaacaaacggttactaacttcaaca 14863897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 400 - 462
Target Start/End: Complemental strand, 54148284 - 54148222
Alignment:
Q  400 ttatctaacacatcctctcaaattcatgatgcatcaacaagaagtattatgagtttgtcaaac 462  Q
    ||||||||||||| |||||||| ||||||||||||||||||||| ||| ||||||||||||||    
T  54148284 ttatctaacacatactctcaaactcatgatgcatcaacaagaagcattgtgagtttgtcaaac 54148222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 302 - 353
Target Start/End: Complemental strand, 14458652 - 14458601
Alignment:
Q  302 ccaataacttaatattacaaaaggttacaagagaatatatataaaacctaat 353  Q
    ||||||||||||||| |||||||||||||||||||| |||||||||||||||    
T  14458652 ccaataacttaatatcacaaaaggttacaagagaatgtatataaaacctaat 14458601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 396 - 462
Target Start/End: Complemental strand, 24226065 - 24225999
Alignment:
Q  396 tttattatctaacacatcctctcaaattcatgatgcatcaacaagaagtattatgagtttgtcaaac 462  Q
    ||||||||||||||| | | |||||| ||||||||||||||||||||  ||| || |||||||||||    
T  24226065 tttattatctaacacttaccctcaaactcatgatgcatcaacaagaatcattgtgggtttgtcaaac 24225999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 282 - 342
Target Start/End: Complemental strand, 16543493 - 16543433
Alignment:
Q  282 ggctaggatttcctataataccaataacttaatattacaaaaggttacaagagaatatata 342  Q
    ||||||| |||| || |||| ||||| ||||| ||| |||||||||||| |||||||||||    
T  16543493 ggctagggtttcatagaatatcaataccttaacattgcaaaaggttacatgagaatatata 16543433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 48; Significance: 3e-18; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 108 - 209
Target Start/End: Original strand, 34740893 - 34740996
Alignment:
Q  108 aaacttagccacaaagagggaaatatcttaat-gactaaatcaaactaacagcaagttagcaacaattcctaatttaaatgat-acaaaacaaccttact 205  Q
    |||| |||| |||||||||||||||||||||| |||||||||||||||||||||||| ||||    |||||| |||| | ||| ||||||||||||||||    
T  34740893 aaacatagctacaaagagggaaatatcttaatagactaaatcaaactaacagcaagtcagcagtggttcctagtttataggataacaaaacaaccttact 34740992  T
Q  206 tcct 209  Q
    ||||    
T  34740993 tcct 34740996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 309 - 462
Target Start/End: Original strand, 3774329 - 3774480
Alignment:
Q  309 cttaatattacaaaaggttacaagagaatatatataaaacctaatcgaatctaaacctaatgggtccaatgacatagacccaataattttattatctaac 408  Q
    ||||| ||||||||||  ||  ||||||||||||||||||||||| || |||||||| | |||  | |||  |||||| ||| || ||| ||||||||||    
T  3774329 cttaacattacaaaagaataatagagaatatatataaaacctaatggattctaaaccaactggc-caaatagcatagatccattacttt-attatctaac 3774426  T
Q  409 acatcctctcaaattcatgatgcatcaacaagaagtattatgagtttgtcaaac 462  Q
    |  | | |||||| ||||||| ||||||||||||| ||| ||||||||||||||    
T  3774427 atctaccctcaaactcatgattcatcaacaagaagcattgtgagtttgtcaaac 3774480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 394 - 462
Target Start/End: Original strand, 2071626 - 2071694
Alignment:
Q  394 attttattatctaacacatcctctcaaattcatgatgcatcaacaagaagtattatgagtttgtcaaac 462  Q
    ||||||||||||||||| | | |||||| ||||||||||| ||||||||| ||| ||||||||||||||    
T  2071626 attttattatctaacacctgccctcaaactcatgatgcattaacaagaagcattctgagtttgtcaaac 2071694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 394 - 462
Target Start/End: Original strand, 2075156 - 2075224
Alignment:
Q  394 attttattatctaacacatcctctcaaattcatgatgcatcaacaagaagtattatgagtttgtcaaac 462  Q
    ||||||||||||||||| | | |||||| ||||||||||| ||||||||| ||| ||||||||||||||    
T  2075156 attttattatctaacacctgccctcaaactcatgatgcattaacaagaagcattctgagtttgtcaaac 2075224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 303 - 362
Target Start/End: Original strand, 15630145 - 15630205
Alignment:
Q  303 caataacttaatattacaaaaggttacaagagaatatat-ataaaacctaatcgaatctaa 362  Q
    ||||||||||||||| |||||||||| |||||||||||| |||||||||||| || |||||    
T  15630145 caataacttaatattccaaaaggttataagagaatatataataaaacctaatagactctaa 15630205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 394 - 455
Target Start/End: Complemental strand, 10354379 - 10354318
Alignment:
Q  394 attttattatctaacacatcctctcaaattcatgatgcatcaacaagaagtattatgagttt 455  Q
    ||||||| |||||||||   |||||||| | ||||||||||||||||||| |||||||||||    
T  10354379 attttatcatctaacacccactctcaaacttatgatgcatcaacaagaagaattatgagttt 10354318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 230 - 275
Target Start/End: Original strand, 11951712 - 11951757
Alignment:
Q  230 cagaaagacaaaacaaataaaaacaaacagccactagcttcaacac 275  Q
    ||||||||||||||||||| ||||||||||| |||| |||||||||    
T  11951712 cagaaagacaaaacaaatataaacaaacagctactaacttcaacac 11951757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 303 - 342
Target Start/End: Original strand, 15629346 - 15629385
Alignment:
Q  303 caataacttaatattacaaaaggttacaagagaatatata 342  Q
    ||||| |||||||||||||||||||| |||||||||||||    
T  15629346 caatagcttaatattacaaaaggttataagagaatatata 15629385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 416 - 461
Target Start/End: Complemental strand, 11993620 - 11993575
Alignment:
Q  416 ctcaaattcatgatgcatcaacaagaagtattatgagtttgtcaaa 461  Q
    |||||| ||| ||||||||||||||||| ||| |||||||||||||    
T  11993620 ctcaaactcaagatgcatcaacaagaagcattgtgagtttgtcaaa 11993575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 313 - 353
Target Start/End: Complemental strand, 30435708 - 30435670
Alignment:
Q  313 atattacaaaaggttacaagagaatatatataaaacctaat 353  Q
    |||||||||||||||||  ||||||||||||||||||||||    
T  30435708 atattacaaaaggttac--gagaatatatataaaacctaat 30435670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 425 - 461
Target Start/End: Original strand, 9167904 - 9167940
Alignment:
Q  425 atgatgcatcaacaagaagtattatgagtttgtcaaa 461  Q
    ||||||||||||||||||| ||| |||||||||||||    
T  9167904 atgatgcatcaacaagaagcattgtgagtttgtcaaa 9167940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 282 - 342
Target Start/End: Original strand, 9168421 - 9168481
Alignment:
Q  282 ggctaggatttcctataataccaataacttaatattacaaaaggttacaagagaatatata 342  Q
    ||||||| |||| || |||| ||||||||| |||| |||||| |||| |||||||||||||    
T  9168421 ggctagggtttcataaaatatcaataacttgatatcacaaaatgttataagagaatatata 9168481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 298 - 362
Target Start/End: Complemental strand, 28665096 - 28665032
Alignment:
Q  298 aataccaataacttaatattacaaaaggttacaagagaatatatataaaacctaatcgaatctaa 362  Q
    |||| ||||| ||||||||||||||| ||||  ||||||||||||  ||||||||| || |||||    
T  28665096 aataacaatagcttaatattacaaaatgttatgagagaatatataataaacctaatggactctaa 28665032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 396 - 462
Target Start/End: Complemental strand, 27315265 - 27315199
Alignment:
Q  396 tttattatctaacacatcctctcaaattcatgatgcatcaacaagaagtattatgagtttgtcaaac 462  Q
    ||||||||||||||  | | |||||| |||||||||||||||||||||||||| |||||||||||||    
T  27315265 tttattatctaacaactaccctcaaactcatgatgcatcaacaagaagtattacgagtttgtcaaac 27315199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 416 - 459
Target Start/End: Complemental strand, 9512451 - 9512408
Alignment:
Q  416 ctcaaattcatgatgcatcaacaagaagtattatgagtttgtca 459  Q
    |||||| ||||||||||||||||||||||||| |||||||||||    
T  9512451 ctcaaactcatgatgcatcaacaagaagtattgtgagtttgtca 9512408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 281 - 362
Target Start/End: Complemental strand, 24137731 - 24137650
Alignment:
Q  281 aggctaggatttcctataataccaataacttaatattacaaaaggttacaagagaatatat-ataaaacctaatcgaatctaa 362  Q
    |||||||| |||| ||||||| ||||  ||||| |||||| ||||||| |||||||||||| |||||||||||| || |||||    
T  24137731 aggctagg-tttcatataatatcaattgcttaacattacagaaggttataagagaatatataataaaacctaatagactctaa 24137650  T

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Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 274 - 364
Target Start/End: Complemental strand, 43516267 - 43516176
Alignment:
Q  274 acaatgaaggctaggatttcc-tataataccaataacttaatattacaaaaggttacaagagaatatatataaaacctaatcgaatctaaac 364  Q
    ||||||| ||||||| ||||  || ||||||| || ||||| |||||| |||||||| ||||||||||||||||||||||| || |||||||    
T  43516267 acaatgacggctagggtttcaatagaataccattagcttaacattacataaggttactagagaatatatataaaacctaatggactctaaac 43516176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 396 - 462
Target Start/End: Original strand, 16578880 - 16578946
Alignment:
Q  396 tttattatctaacacatcctctcaaattcatgatgcatcaacaagaagtattatgagtttgtcaaac 462  Q
    ||||||||||||||||| |  ||||||||||| ||||| ||||||||  ||||||||||||||||||    
T  16578880 tttattatctaacacataccttcaaattcatgttgcattaacaagaaacattatgagtttgtcaaac 16578946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 416 - 462
Target Start/End: Original strand, 2098509 - 2098555
Alignment:
Q  416 ctcaaattcatgatgcatcaacaagaagtattatgagtttgtcaaac 462  Q
    |||||| |||||||||||||||||||| |||| ||||||||||||||    
T  2098509 ctcaaactcatgatgcatcaacaagaaatattgtgagtttgtcaaac 2098555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 396 - 462
Target Start/End: Complemental strand, 5616942 - 5616876
Alignment:
Q  396 tttattatctaacacatcctctcaaattcatgatgcatcaacaagaagtattatgagtttgtcaaac 462  Q
    |||||||||||| || | |||||||| | ||||||||| ||||||||| ||| ||||||||||||||    
T  5616942 tttattatctaaaacttactctcaaactaatgatgcataaacaagaagcattgtgagtttgtcaaac 5616876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 315 - 353
Target Start/End: Original strand, 16578793 - 16578831
Alignment:
Q  315 attacaaaaggttacaagagaatatatataaaacctaat 353  Q
    ||||||||||||||||| ||||||||||||||| |||||    
T  16578793 attacaaaaggttacaatagaatatatataaaatctaat 16578831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 304 - 353
Target Start/End: Original strand, 20093300 - 20093347
Alignment:
Q  304 aataacttaatattacaaaaggttacaagagaatatatataaaacctaat 353  Q
    |||||||||| ||||||| |||||||||||||||||  ||||||||||||    
T  20093300 aataacttaacattacaagaggttacaagagaatat--ataaaacctaat 20093347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 394 - 462
Target Start/End: Complemental strand, 24726690 - 24726622
Alignment:
Q  394 attttattatctaacacatcctctcaaattcatgatgcatcaacaagaagtattatgagtttgtcaaac 462  Q
    |||||| |||||||||| | |  ||||| ||||||||||||||||| || |||| ||| ||||||||||    
T  24726690 attttactatctaacacttaccttcaaactcatgatgcatcaacaaaaaatattgtgaatttgtcaaac 24726622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0325 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0325
Description:

Target: scaffold0325; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 303 - 352
Target Start/End: Original strand, 14525 - 14574
Alignment:
Q  303 caataacttaatattacaaaaggttacaagagaatatatataaaacctaa 352  Q
    ||||| ||||||| |||||||||||| |||||||||||||||||||||||    
T  14525 caatagcttaatactacaaaaggttataagagaatatatataaaacctaa 14574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000005; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 284 - 362
Target Start/End: Original strand, 15614230 - 15614309
Alignment:
Q  284 ctaggatttcctataataccaataacttaatattacaaaaggttacaagagaatatat-ataaaacctaatcgaatctaa 362  Q
    ||||| |||| || |||| ||||| |||||||||||||||||||| || ||||||||| |||||||||||| || |||||    
T  15614230 ctagggtttcatagaataacaatagcttaatattacaaaaggttataaaagaatatataataaaacctaatggactctaa 15614309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 298 - 344
Target Start/End: Complemental strand, 5763748 - 5763702
Alignment:
Q  298 aataccaataacttaatattacaaaaggttacaagagaatatatata 344  Q
    |||| ||||| ||||||||||||||| ||||||||||||||||||||    
T  5763748 aatatcaatatcttaatattacaaaatgttacaagagaatatatata 5763702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 396 - 462
Target Start/End: Complemental strand, 21814440 - 21814374
Alignment:
Q  396 tttattatctaacacatcctctcaaattcatgatgcatcaacaagaagtattatgagtttgtcaaac 462  Q
    ||||||||||||| | | | |||||| |||||||||| |||||||||| ||| ||||||||||||||    
T  21814440 tttattatctaacgcctaccctcaaactcatgatgcaacaacaagaagcattgtgagtttgtcaaac 21814374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 396 - 457
Target Start/End: Original strand, 11828004 - 11828065
Alignment:
Q  396 tttattatctaacacatcctctcaaattcatgatgcatcaacaagaagtattatgagtttgt 457  Q
    ||||||||||||||| | | || ||| ||||||||||||||||||||| ||| |||||||||    
T  11828004 tttattatctaacacctaccctaaaactcatgatgcatcaacaagaagcattgtgagtttgt 11828065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 298 - 342
Target Start/End: Complemental strand, 30867220 - 30867176
Alignment:
Q  298 aataccaataacttaatattacaaaaggttacaagagaatatata 342  Q
    |||| ||||||||||||||||||||| || |||||||||||||||    
T  30867220 aatatcaataacttaatattacaaaaagtcacaagagaatatata 30867176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 274 - 344
Target Start/End: Original strand, 39349372 - 39349442
Alignment:
Q  274 acaatgaaggctaggatttcctataataccaataacttaatattacaaaaggttacaagagaatatatata 344  Q
    |||||| |||| ||| |||| || |||| || |||||| | |||||||||||||||| |||||||||||||    
T  39349372 acaatggaggcaagggtttcatagaatagcattaacttgacattacaaaaggttacaggagaatatatata 39349442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 295 - 339
Target Start/End: Original strand, 46963055 - 46963099
Alignment:
Q  295 tataataccaataacttaatattacaaaaggttacaagagaatat 339  Q
    ||||||| ||||| ||||| |||||||||||||| ||||||||||    
T  46963055 tataataacaatagcttaacattacaaaaggttataagagaatat 46963099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 303 - 362
Target Start/End: Original strand, 46964417 - 46964477
Alignment:
Q  303 caataacttaatattacaaaaggttacaagagaatatat-ataaaacctaatcgaatctaa 362  Q
    ||||| ||||||||||||||| |||| |||||||||||| |||||| ||||| || |||||    
T  46964417 caatagcttaatattacaaaaagttataagagaatatataataaaatctaatggactctaa 46964477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 396 - 462
Target Start/End: Original strand, 1172862 - 1172927
Alignment:
Q  396 tttattatctaacacatcctctcaaattcatgatgcatcaacaagaagtattatgagtttgtcaaac 462  Q
    ||||||||||||||||| |  ||||||||||||||||||||||| ||  ||| ||||||||||||||    
T  1172862 tttattatctaacacataccttcaaattcatgatgcatcaacaa-aaacattgtgagtttgtcaaac 1172927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 309 - 364
Target Start/End: Original strand, 42633712 - 42633767
Alignment:
Q  309 cttaatattacaaaaggttacaagagaatatatataaaacctaatcgaatctaaac 364  Q
    ||||| |||||||||| |||| ||||||||||||||||||| ||| || |||||||    
T  42633712 cttaacattacaaaagattactagagaatatatataaaacccaattgactctaaac 42633767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 396 - 462
Target Start/End: Original strand, 29409169 - 29409235
Alignment:
Q  396 tttattatctaacacatcctctcaaattcatgatgcatcaacaagaagtattatgagtttgtcaaac 462  Q
    ||||||||||||||| | | |||||| |||||||||||||||| |||| | | |||| |||||||||    
T  29409169 tttattatctaacacctaccctcaaactcatgatgcatcaacacgaagcactgtgagcttgtcaaac 29409235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 401 - 462
Target Start/End: Complemental strand, 34172133 - 34172072
Alignment:
Q  401 tatctaacacatcctctcaaattcatgatgcatcaacaagaagtattatgagtttgtcaaac 462  Q
    |||||||||||||| |||||| ||||||||||  |||||||| ||| | |||||| ||||||    
T  34172133 tatctaacacatcccctcaaactcatgatgcaaaaacaagaaatatcaagagtttttcaaac 34172072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 320 - 353
Target Start/End: Complemental strand, 37791336 - 37791303
Alignment:
Q  320 aaaaggttacaagagaatatatataaaacctaat 353  Q
    ||||||||||||||||||||||||||||| ||||    
T  37791336 aaaaggttacaagagaatatatataaaacttaat 37791303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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