View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8175_low_18 (Length: 489)

Name: NF8175_low_18
Description: NF8175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8175_low_18
NF8175_low_18
[»] chr5 (2 HSPs)
chr5 (18-480)||(33690346-33690804)
chr5 (210-285)||(27335054-27335129)
[»] chr2 (6 HSPs)
chr2 (210-317)||(4139509-4139617)
chr2 (209-301)||(27060936-27061028)
chr2 (210-298)||(29483277-29483367)
chr2 (238-301)||(38588880-38588943)
chr2 (235-301)||(41231318-41231384)
chr2 (395-463)||(4139655-4139723)
[»] chr4 (2 HSPs)
chr4 (228-282)||(45497628-45497682)
chr4 (226-282)||(26335574-26335630)
[»] chr1 (5 HSPs)
chr1 (226-298)||(4747322-4747394)
chr1 (207-306)||(16136653-16136755)
chr1 (226-298)||(14244648-14244721)
chr1 (226-301)||(5355236-5355312)
chr1 (226-285)||(24763551-24763610)
[»] chr7 (4 HSPs)
chr7 (210-298)||(38364154-38364244)
chr7 (209-298)||(41970662-41970753)
chr7 (226-306)||(22616319-22616400)
chr7 (238-301)||(4092928-4092992)


Alignment Details
Target: chr5 (Bit Score: 324; Significance: 0; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 18 - 480
Target Start/End: Complemental strand, 33690804 - 33690346
Alignment:
Q  18 aagaatctctgtgtaaacacatgtcataaaacttaaggtaataaattgcaataagtgtttaaacaattaatgtacacgtattgactattgaacttatgta 117  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||| | ||||||    
T  33690804 aagaatgtctgtgtaaacacatgtcataaaacttaaggtaataaattgtaataagtgtttaaacaataaatgtacacgtattgactattgagcatatgta 33690705  T
Q  118 ttgttcattnnnnnnnttaatgagtgttaagaatcatggaattttaagcataaaagtcatagtgatcggtaaggaagagtgtataagagtatgagtaatg 217  Q
    ||   | ||       ||||||||||||| ||||||||||| | |||| ||||||||||||||||||| |||| ||||||||||||||||||||||||||    
T  33690704 tt---cgttaaaaaaattaatgagtgttatgaatcatggaaatctaaggataaaagtcatagtgatcgataagaaagagtgtataagagtatgagtaatg 33690608  T
Q  218 ataactagacaaaatatttgacacaaatacaacatcatagacaattttgacatttcaactataaagcaggggtagttttgtaaatcccctcatcccatct 317  Q
    |||| |||| ||||||||||| |||||||||| |||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||    
T  33690607 ataattagataaaatatttgatacaaatacaatatcatagacaattttgacatttcaactataaaacaggggtacttttgtaaatcccctcatcccatct 33690508  T
Q  318 tgctcacacaaccgtcctccccaccaccaccgccctctcgcaccgtcgtcctcaccatcaccctcaccaccatgagttcgttcagaactattttccctca 417  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |    
T  33690507 tgctcacacaaccgtcctccccaccaccaccgccctcccgcaccgtcgtcctcaccatcaccctcaccaccatgagttcgttcagaactattttccttta 33690408  T
Q  418 cactgcagaagacctgttcagatcaccgctgcaacaccggtgacgacctccttccattcatct 480  Q
    ||| ||||| |||| ||| ||||||||||||||||||||||||||||||||||||||||||||    
T  33690407 caccgcagatgacc-gtttagatcaccgctgcaacaccggtgacgacctccttccattcatct 33690346  T

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Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 210 - 285
Target Start/End: Complemental strand, 27335129 - 27335054
Alignment:
Q  210 gagtaatgataactagacaaaatatttgacacaaatacaacatcatagacaattttgacatttcaactataaagca 285  Q
    ||||||||||||||| ||| |||||||||||||||||||||| ||  |||| |||||||||||  || ||||||||    
T  27335129 gagtaatgataactaaacacaatatttgacacaaatacaacaccaatgacatttttgacatttgtaccataaagca 27335054  T

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Target: chr2 (Bit Score: 69; Significance: 9e-31; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 210 - 317
Target Start/End: Original strand, 4139509 - 4139617
Alignment:
Q  210 gagtaatgataactag-acaaaatatttgacacaaatacaacatcatagacaattttgacatttcaactataaagcaggggtagttttgtaaatcccctc 308  Q
    |||||||||||||||| | |||||||||||| ||||||||||| |||||||| ||||||| |||||||||||||||| ||||||||||||||||||||      
T  4139509 gagtaatgataactagcataaaatatttgacgcaaatacaacaccatagacatttttgacgtttcaactataaagcaagggtagttttgtaaatccccat 4139608  T
Q  309 atcccatct 317  Q
    |||||||||    
T  4139609 atcccatct 4139617  T

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Target: chr2; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 209 - 301
Target Start/End: Original strand, 27060936 - 27061028
Alignment:
Q  209 tgagtaatgataactagacaaaatatttgacacaaatacaacatcatagacaattttgacatttcaactataaagcaggggtagttttgtaaa 301  Q
    |||||||||||||||| ||| |||||||||||||||||||||| ||  |||| ||||||||||| ||| |||||||| ||| | |||||||||    
T  27060936 tgagtaatgataactaaacacaatatttgacacaaatacaacaccaatgacatttttgacatttgaaccataaagcaagggcaattttgtaaa 27061028  T

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Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 210 - 298
Target Start/End: Original strand, 29483277 - 29483367
Alignment:
Q  210 gagtaatgataactagaca--aaatatttgacacaaatacaacatcatagacaattttgacatttcaactataaagcaggggtagttttgt 298  Q
    |||||||||||||||||||  ||||||||||||||||||| ||| ||| |  | ||| || ||||| || || ||||||||||||||||||    
T  29483277 gagtaatgataactagacacaaaatatttgacacaaatacgacaccatgggtagtttggatatttccaccattaagcaggggtagttttgt 29483367  T

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Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 238 - 301
Target Start/End: Complemental strand, 38588943 - 38588880
Alignment:
Q  238 acacaaatacaacatcatagacaattttgacatttcaactataaagcaggggtagttttgtaaa 301  Q
    |||||||||||||||||| ||||||||||| |||||| | ||||||||| || | |||||||||    
T  38588943 acacaaatacaacatcatggacaattttgatatttcacccataaagcagtggcaattttgtaaa 38588880  T

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Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 235 - 301
Target Start/End: Complemental strand, 41231384 - 41231318
Alignment:
Q  235 ttgacacaaatacaacatcatagacaattttgacatttcaactataaagcaggggtagttttgtaaa 301  Q
    ||||||||||||||||| ||| |||  ||||||||||||||| ||||||  |||| |||||||||||    
T  41231384 ttgacacaaatacaacaccatggactgttttgacatttcaaccataaagtgggggcagttttgtaaa 41231318  T

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Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 395 - 463
Target Start/End: Original strand, 4139655 - 4139723
Alignment:
Q  395 tcgttcagaactattttccctcacactgcagaagacctgttcagatcaccgctgcaacaccggtgacga 463  Q
    ||||| ||| |||||||||||||||| ||| |||||  ||||| |||||||| ||||||| ||||||||    
T  4139655 tcgttgagatctattttccctcacaccgcaaaagactcgttcatatcaccgccgcaacactggtgacga 4139723  T

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Target: chr4 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 228 - 282
Target Start/End: Original strand, 45497628 - 45497682
Alignment:
Q  228 aaaatatttgacacaaatacaacatcatagacaattttgacatttcaactataaa 282  Q
    ||||||||||||||||| |||||||||| |||||||||||||||||||| |||||    
T  45497628 aaaatatttgacacaaaaacaacatcatggacaattttgacatttcaaccataaa 45497682  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 226 - 282
Target Start/End: Complemental strand, 26335630 - 26335574
Alignment:
Q  226 acaaaatatttgacacaaatacaacatcatagacaattttgacatttcaactataaa 282  Q
    ||||||||||| ||||||| |||||| ||| |||| ||||| ||||||||| |||||    
T  26335630 acaaaatatttaacacaaaaacaacaccatggacagttttgtcatttcaaccataaa 26335574  T

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Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 226 - 298
Target Start/End: Complemental strand, 4747394 - 4747322
Alignment:
Q  226 acaaaatatttgacacaaatacaacatcatagacaattttgacatttcaactataaagcaggggtagttttgt 298  Q
    ||||||||||||| |||||||||||  ||| | || ||||||||||||||| |||||||| ||| ||||||||    
T  4747394 acaaaatatttgaaacaaatacaacgccatgggcagttttgacatttcaaccataaagcaagggcagttttgt 4747322  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 207 - 306
Target Start/End: Complemental strand, 16136755 - 16136653
Alignment:
Q  207 tatgagtaatgataactagaca--aaatatttgacacaaatacaacatcatagacaattttgacatttcaactataaagcaggggtagttttgt-aaatc 303  Q
    ||||||||||||||||||||||  ||||||||||||||||||| ||| ||| |  | ||| || ||||| || || ||||||||| |||||||| |||||    
T  16136755 tatgagtaatgataactagacacaaaatatttgacacaaatacgacaccatgggtagtttggatatttccaccattaagcaggggcagttttgtcaaatc 16136656  T
Q  304 ccc 306  Q
    |||    
T  16136655 ccc 16136653  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 226 - 298
Target Start/End: Original strand, 14244648 - 14244721
Alignment:
Q  226 acaaaatatttgacacaaatacaacatcatagacaattttgacatttcaactataaagca-ggggtagttttgt 298  Q
    |||||||||| ||||||||||||||| ||| |||| ||| ||||||||| | |||||||| |||| ||||||||    
T  14244648 acaaaatattggacacaaatacaacaccatggacagtttggacatttcatccataaagcatggggcagttttgt 14244721  T

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Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 226 - 301
Target Start/End: Original strand, 5355236 - 5355312
Alignment:
Q  226 acaaaatatttgacacaaatacaacatcatagacaattttgacatttcaactataaagca-ggggtagttttgtaaa 301  Q
    |||||||||||||||||||||||||| ||| || | ||| | ||||| ||| ||||| || ||||||||||||||||    
T  5355236 acaaaatatttgacacaaatacaacaccatggatagtttagccattttaaccataaaacagggggtagttttgtaaa 5355312  T

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Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 226 - 285
Target Start/End: Original strand, 24763551 - 24763610
Alignment:
Q  226 acaaaatatttgacacaaatacaacatcatagacaattttgacatttcaactataaagca 285  Q
    ||||| |||| ||||||||||||||| ||| || |||||||||||||||||  |||||||    
T  24763551 acaaattattagacacaaatacaacaccatggataattttgacatttcaacactaaagca 24763610  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000005; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 210 - 298
Target Start/End: Original strand, 38364154 - 38364244
Alignment:
Q  210 gagtaatgataactagaca--aaatatttgacacaaatacaacatcatagacaattttgacatttcaactataaagcaggggtagttttgt 298  Q
    |||||||||||||||||||  ||||||||||||||||||| ||| ||| |  | ||| || ||||| || || ||||||||||||||||||    
T  38364154 gagtaatgataactagacacaaaatatttgacacaaatacgacaccatgggtagtttggatatttccaccattaagcaggggtagttttgt 38364244  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 209 - 298
Target Start/End: Complemental strand, 41970753 - 41970662
Alignment:
Q  209 tgagtaatgataactagaca--aaatatttgacacaaatacaacatcatagacaattttgacatttcaactataaagcaggggtagttttgt 298  Q
    ||||||||||||||||||||  ||||||||||||||||||| ||| ||| |  | ||| || ||||| || || ||| ||||||||||||||    
T  41970753 tgagtaatgataactagacacaaaatatttgacacaaatacgacaccatgggtagtttggatatttccaccattaagtaggggtagttttgt 41970662  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 226 - 306
Target Start/End: Original strand, 22616319 - 22616400
Alignment:
Q  226 acaaaatatttgacacaaatacaacatcatagacaattttgacatttcaactataaagcaggggtagttttgt-aaatcccc 306  Q
    |||||||||||||||||||||| ||| ||| |  | ||| || ||||| || || |||||||||||||||||| ||||||||    
T  22616319 acaaaatatttgacacaaatacgacaccatgggtagtttggatatttccaccattaagcaggggtagttttgtcaaatcccc 22616400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 238 - 301
Target Start/End: Original strand, 4092928 - 4092992
Alignment:
Q  238 acacaaatacaacatcatagacaattttgacatttcaactataaagcag-gggtagttttgtaaa 301  Q
    |||||||||||||| ||| | |||||||||||||||||   |||||||| ||||| |||||||||    
T  4092928 acacaaatacaacaccatgggcaattttgacatttcaaaattaaagcagtgggtaattttgtaaa 4092992  T

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