View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8175_low_19 (Length: 472)
Name: NF8175_low_19
Description: NF8175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8175_low_19 |
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Alignment Details
Target: chr3 (Bit Score: 345; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 16 - 457
Target Start/End: Original strand, 2731962 - 2732395
Alignment:
| Q |
16 |
caataactacaaccaactataagaaaacacacaaaggaacaaatggttatttttctcaaacctaagttccttttacaaaactagtaatctatgtaaaatt |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| |||||||||| ||||||||| |
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| T |
2731962 |
caataactacaaccaactataagaaaacacataaaggaacaaatggttatttttctcaaacctaagttccatttacaaagctagtaatctgtgtaaaatt |
2732061 |
T |
|
| Q |
116 |
attattaatccataatcaagtgtacacatgtaaattcacaaacttgtaaatttatccaatcgaataagactatttcaaatttgaatgtcataaagaggtg |
215 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
2732062 |
attattaatccat--------gtacacatgtaaattcacaaacttgtaaatttatccaatcgaacaagactatttcaaatttgaatgtcataaagaggtg |
2732153 |
T |
|
| Q |
216 |
aaaaccaaatcaacaaatttaaaggaaatataaaatttaatgtaatccaactttgaagataatatagatatcagaaacaatttaatgtaatcaaaataat |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||| |
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| T |
2732154 |
aaaaccaaatcaacaaatttaaaggaaatataaaatttaatgtaatccaactttgaagataatatagaaatcagttacaatttaatgtaatcaaaataat |
2732253 |
T |
|
| Q |
316 |
caacttgaaagagagtattgaaatcaaacttttgttaaaatgaattaattataaaacccagagctaactccatcttatggatagctctttcctcgtaaga |
415 |
Q |
| |
|
|||||||||| |||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| |||| |||||||| ||||||||||||||| |
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|
| T |
2732254 |
caacttgaaaaagagtattgaaatcgaacttttgttaaaatgaattaattataaaaccgagagctaactctatctcatggatagttctttcctcgtaaga |
2732353 |
T |
|
| Q |
416 |
gcggcctcctttagcaatagcttcatctaagggataattctt |
457 |
Q |
| |
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||||||||| |||||||||||||||| |||||||||| |||| |
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|
| T |
2732354 |
gcggcctcccttagcaatagcttcatttaagggataactctt |
2732395 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 129 - 247
Target Start/End: Complemental strand, 19435146 - 19435027
Alignment:
| Q |
129 |
aatcaagtgtacacatgtaaattcacaaac--ttgtaaatttatccaatcgaataagactatttc-aaatttgaatgtcataaagaggtgaaaaccaaat |
225 |
Q |
| |
|
|||||||||||| |||| ||||||| ||| |||||| |||||| || | ||||||||||| || |||||| |||||| | |||||||| ||||||||| |
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|
| T |
19435146 |
aatcaagtgtac-catgaaaattcataaaactttgtaattttatcaaaccaaataagactatatcaaaatttcaatgtcgtcaagaggtg-aaaccaaat |
19435049 |
T |
|
| Q |
226 |
caacaaatttaaaggaaatata |
247 |
Q |
| |
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| |||| ||||||| ||||||| |
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|
| T |
19435048 |
ccacaactttaaagaaaatata |
19435027 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 159 - 247
Target Start/End: Complemental strand, 11200807 - 11200719
Alignment:
| Q |
159 |
ttgtaaatttatccaatcgaataagactatttcaaatttg-aatgtcataaagaggtgaaaaccaaatcaacaaatttaaaggaaatata |
247 |
Q |
| |
|
||||||||||||| || | ||||| ||||| ||||| || |||||| ||||||||||||| ||||||||| || | ||||||||||||| |
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|
| T |
11200807 |
ttgtaaatttatcaaaccaaataaaactatatcaaaattccaatgtcgtaaagaggtgaaa-ccaaatcaataactataaaggaaatata |
11200719 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 129 - 245
Target Start/End: Original strand, 29467054 - 29467169
Alignment:
| Q |
129 |
aatcaagtgtacacatgtaaattcacaaacttgtaaatttatccaatcgaataagactatttcaaatttgaatgtcataaagaggtgaaaaccaaatcaa |
228 |
Q |
| |
|
|||||||||||| |||| ||||||| ||| || ||||||||||||||| |||||||||| | ||| | |||||||||||||||||||||||||||| | |
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|
| T |
29467054 |
aatcaagtgtac-catggaaattcataaatttataaatttatccaatcaaataagactaatcaaaagtccaatgtcataaagaggtgaaaaccaaatcga |
29467152 |
T |
|
| Q |
229 |
caaatttaaaggaaata |
245 |
Q |
| |
|
||| ||||||| ||||| |
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|
| T |
29467153 |
caactttaaagaaaata |
29467169 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 206 - 247
Target Start/End: Original strand, 32807510 - 32807551
Alignment:
| Q |
206 |
taaagaggtgaaaaccaaatcaacaaatttaaaggaaatata |
247 |
Q |
| |
|
|||||||| ||||||||||||||||| ||||||||||||||| |
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|
| T |
32807510 |
taaagaggcgaaaaccaaatcaacaactttaaaggaaatata |
32807551 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 199 - 247
Target Start/End: Complemental strand, 301344 - 301296
Alignment:
| Q |
199 |
aatgtcataaagaggtgaaaaccaaatcaacaaatttaaaggaaatata |
247 |
Q |
| |
|
||||| |||| ||||||||||||||||||||||||||||| ||||||| |
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|
| T |
301344 |
aatgtgataatgaggtgaaaaccaaatcaacaaatttaaacaaaatata |
301296 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 129 - 247
Target Start/End: Original strand, 47050569 - 47050688
Alignment:
| Q |
129 |
aatcaagtgtacacatgtaaattcacaaac--ttgtaaatttatccaatcgaataagactatttc-aaatttgaatgtcataaagaggtgaaaaccaaat |
225 |
Q |
| |
|
|||||||||||| |||| ||||||| ||| |||||| |||||| || | ||||||||||| || |||||| |||||| | |||||||| ||||||||| |
|
|
| T |
47050569 |
aatcaagtgtac-catgaaaattcataaaactttgtaattttatcaaaccaaataagactatatcaaaatttcaatgtcgtcaagaggtg-aaaccaaat |
47050666 |
T |
|
| Q |
226 |
caacaaatttaaaggaaatata |
247 |
Q |
| |
|
| |||| ||||||| ||||||| |
|
|
| T |
47050667 |
ccacaactttaaagaaaatata |
47050688 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 159 - 247
Target Start/End: Complemental strand, 16100853 - 16100765
Alignment:
| Q |
159 |
ttgtaaatttatccaatcgaataagactatttc-aaatttgaatgtcataaagaggtgaaaaccaaatcaacaaatttaaaggaaatata |
247 |
Q |
| |
|
|||||| |||||| || | ||||||||||| || |||||| |||||| | |||||||| |||||||||| |||| ||||||| ||||||| |
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|
| T |
16100853 |
ttgtaattttatcaaaccaaataagactatatcaaaatttcaatgtcgtcaagaggtg-aaaccaaatccacaactttaaagaaaatata |
16100765 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 129 - 180
Target Start/End: Original strand, 8164501 - 8164551
Alignment:
| Q |
129 |
aatcaagtgtacacatgtaaattcacaaacttgtaaatttatccaatcgaat |
180 |
Q |
| |
|
|||||||||||| |||| ||||||||||| |||||| ||||||||||||||| |
|
|
| T |
8164501 |
aatcaagtgtac-catgaaaattcacaaatttgtaattttatccaatcgaat |
8164551 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 129 - 247
Target Start/End: Original strand, 27561192 - 27561311
Alignment:
| Q |
129 |
aatcaagtgtacacatgtaaattcacaaac--ttgtaaatttatccaatcgaataagactatttc-aaatttgaatgtcataaagaggtgaaaaccaaat |
225 |
Q |
| |
|
|||||||||||| |||| ||||||| ||| |||||| |||||| || | ||||||||||| || |||||| |||||| | |||||||| ||||||||| |
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|
| T |
27561192 |
aatcaagtgtac-catgaaaattcataaaactttgtaattttatcaaaccaaataagactatatcaaaatttcaatgtcgtcaagaggtg-aaaccaaat |
27561289 |
T |
|
| Q |
226 |
caacaaatttaaaggaaatata |
247 |
Q |
| |
|
| |||| ||||||| ||||||| |
|
|
| T |
27561290 |
ccacaactttaaagaaaatata |
27561311 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 129 - 247
Target Start/End: Complemental strand, 45332801 - 45332682
Alignment:
| Q |
129 |
aatcaagtgtacacatgtaaattcacaaac--ttgtaaatttatccaatcgaataagactatttc-aaatttgaatgtcataaagaggtgaaaaccaaat |
225 |
Q |
| |
|
|||||||||||| |||| ||||||| ||| |||||| |||||| || | ||||||||||| || |||||| |||||| | |||||||| ||||||||| |
|
|
| T |
45332801 |
aatcaagtgtac-catgaaaattcataaaactttgtaattttatcaaaccaaataagactatatcaaaatttcaatgtcgtcaagaggtg-aaaccaaat |
45332704 |
T |
|
| Q |
226 |
caacaaatttaaaggaaatata |
247 |
Q |
| |
|
| |||| ||||||| ||||||| |
|
|
| T |
45332703 |
ccacaactttaaagaaaatata |
45332682 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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