View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8175_low_21 (Length: 444)
Name: NF8175_low_21
Description: NF8175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8175_low_21 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 326; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 18 - 444
Target Start/End: Complemental strand, 7477178 - 7476755
Alignment:
| Q |
18 |
gataaagtagagaagttttttcagggaaaagtaaagaatattgtagagtttttaaatgataagttcataannnnnnnnnnnnnngagagagtgataagtt |
117 |
Q |
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| T |
7477178 |
gataaagtagagaagttttttcagggaaaagtaaagaatattgtagagtttttaaatgataagttcataattttttgtttttttgagagagtgataagtt |
7477079 |
T |
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| Q |
118 |
catagtttaaactctaaaaactgacattattctctaactaattaattaatacttattgataaaaacaaatgatcttatgtcatattagactttggcatct |
217 |
Q |
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| T |
7477078 |
catagtttaaactctaaaaactaacattat-ctctaactaattaattaatacttattgataaaaacaaatgatcttatgtcatattagactttggcatct |
7476980 |
T |
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| Q |
218 |
ctatcactgttacgatcatttgggaatattatatgctgccattagagttt-ataacatgcatgtgttgatcttattcgacaccatattttatttcttgaa |
316 |
Q |
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| T |
7476979 |
ctatcactgttacgatcatttgggaatattatatgctgccattagagttttataacatgcatgtgttgatcttattcgacaccatattttatttcttgaa |
7476880 |
T |
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| Q |
317 |
ttctttaatggcaacgcggcaattcttgcattcattattagttgatgtgtcaattacatgtcctctaataaaaacatgcataccnnnnnnnnaaaataaa |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | |
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| T |
7476879 |
ttctttaatggcaacgcggcaattcttgcattcattattagttgatgtgtcaattacatgtcctctaataaaaacatgcatacc-tttttttaaaat--a |
7476783 |
T |
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| Q |
417 |
aaatatttaaggtgaaggaataatgtcc |
444 |
Q |
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| T |
7476782 |
aaatatttaaggtgaaggaataatgtcc |
7476755 |
T |
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