View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8175_low_26 (Length: 397)
Name: NF8175_low_26
Description: NF8175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8175_low_26 |
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Alignment Details
Target: chr2 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 81 - 382
Target Start/End: Original strand, 24756407 - 24756708
Alignment:
| Q |
81 |
tcatgtgcttcttcctaataacccttcaatcaacatgttgctaagatattatgatgaattgaatcattcaatgtgctcctaagtgttgtagaatttttgt |
180 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24756407 |
tcatgtgcttcttcttaataacccttcaatcaacatgttgctaagatattatgatgaattgaatcattcaatgtgctcctaagtgttgtagaatttttgt |
24756506 |
T |
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| Q |
181 |
gctccacttttgtttcatcatactttggaacccaccaaactctcacacttctatcaaggctcccactatacaacaaaaatccaccaccaattctattaga |
280 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24756507 |
cctccacttttgtttcatcatactttggaacccaccaaactctcacacttctatcaaggctcccactatacaacaaaaatccaccaccaattctattaga |
24756606 |
T |
|
| Q |
281 |
tgatgaagcttgtaaacacttcacaggaccttcatgtccaattataaccccaactttacaaattttaccaaaagcctctcttttccaaatacctatactt |
380 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24756607 |
tgatgaagcttgtaaacacttcacaggaccttcatgtccaattataaccccaactttacaaattttaccaaaagcctctcttttccaaatacctatactt |
24756706 |
T |
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| Q |
381 |
tt |
382 |
Q |
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|| |
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| T |
24756707 |
tt |
24756708 |
T |
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