View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8175_low_27 (Length: 396)
Name: NF8175_low_27
Description: NF8175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8175_low_27 |
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Alignment Details
Target: chr3 (Bit Score: 312; Significance: 1e-176; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 16 - 379
Target Start/End: Complemental strand, 32365259 - 32364896
Alignment:
| Q |
16 |
tcccttttggatatttgtattggcttctgttagaattgatgatgacaatgttagataagcactagtagcttttggaatcattcttagtttttgtggttta |
115 |
Q |
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| T |
32365259 |
tcccttttggatatttgtattggcttctgttagaattgatgatgacaatgttagacaaacactagtagcttttggaatcattcttagtttttgtggttta |
32365160 |
T |
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| Q |
116 |
ctttatggtggattttggaggattcaaatgagaaagaggtttaatttgcctgcctatgaattctgttttggaaaaccatcattttctgattgcacacttt |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||| |
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| T |
32365159 |
ctttatggtggattttggaggattcaaatgagaaagaggttcaatttgcctgcctataaattctgttttggaaaaccatcactttctgattgcacacttt |
32365060 |
T |
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| Q |
216 |
ggttatgctgctgttggtgctctcttgctcaagaagctagaaccgggaacagttatgatctcttggaagataagttatgcatgaaagaaattgatactcg |
315 |
Q |
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| T |
32365059 |
ggttatgctgctgttggtgctctcttgctcaagaagccaggactgggaatagttatgatatcttggaagataagttatccatgaaagaaattgatactcg |
32364960 |
T |
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| Q |
316 |
cgatcaatcttcggtttcatctttggttggacaagacgtagtatcaagcaaatccgacacaagt |
379 |
Q |
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| T |
32364959 |
cgatcaatcttcggtttcatgtttggctggacaagacgtagtatcaagcaaatccgacacaagt |
32364896 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 16 - 329
Target Start/End: Complemental strand, 32376944 - 32376631
Alignment:
| Q |
16 |
tcccttttggatatttgtattggcttctgttagaattgatgatgacaatgttagataagcactagtagcttttggaatcattcttagtttttgtggttta |
115 |
Q |
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| T |
32376944 |
tcccttttggatatttgtattggcttctgttagaattgatgatgacaatgttagacaagcactagtagcttttggaatcattcttagtttttgtggttta |
32376845 |
T |
|
| Q |
116 |
ctttatggtggattttggaggattcaaatgagaaagaggtttaatttgcctgcctatgaattctgttttggaaaaccatcattttctgattgcacacttt |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32376844 |
ctttatggtggattttggaggattcaaatgagaaagaggttcaatttgcctgcctatgaattctgttttggaaaaccatcattttctgattgcacacttt |
32376745 |
T |
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| Q |
216 |
ggttatgctgctgttggtgctctcttgctcaagaagctagaaccgggaacagttatgatctcttggaagataagttatgcatgaaagaaattgatactcg |
315 |
Q |
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| T |
32376744 |
ggttatgctgctgttggtgctctcttgctcaagaagccaggactgggaatagttatgatatcttggaagataagttatccatgaaagaaattgattcccg |
32376645 |
T |
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| Q |
316 |
cgatcaatcttcgg |
329 |
Q |
| |
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|||||||||||||| |
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| T |
32376644 |
cgatcaatcttcgg |
32376631 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 119 - 250
Target Start/End: Complemental strand, 36121774 - 36121643
Alignment:
| Q |
119 |
tatggtggattttggaggattcaaatgagaaagaggtttaatttgcctgcctatgaattctgttttggaaaaccatcattttctgattgcacactttggt |
218 |
Q |
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|||||||| ||||||||||| |||||||||||||||| |||||||||| | ||||| |||||||| || || || | |||| ||||||| ||||||| |
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| T |
36121774 |
tatggtggtttttggaggatccaaatgagaaagaggtataatttgcctacttatgacttctgtttcggcaagcctgcggtttcggattgcatactttggc |
36121675 |
T |
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| Q |
219 |
tatgctgctgttggtgctctcttgctcaagaa |
250 |
Q |
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||| ||| |||||||||||||||||||||||| |
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| T |
36121674 |
tattctgttgttggtgctctcttgctcaagaa |
36121643 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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