View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8175_low_30 (Length: 389)
Name: NF8175_low_30
Description: NF8175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8175_low_30 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 357; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 1 - 373
Target Start/End: Complemental strand, 44730095 - 44729723
Alignment:
| Q |
1 |
atgaacaaaaaatatgtcatggttccaatgaaaccagggaagcctgtcggattaagcgccgaagattgtcgtcgaattctttcgatcgctaactcagctc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
44730095 |
atgaacaaaaaatatgtcatggttccaatgaaaccagggaagcctgtcggattaagcgccgaagattgtagtcgaattctttcgatcgctaactcagctc |
44729996 |
T |
|
| Q |
101 |
ttaataccaataattatctcatgagctctcaaggctttgttccttggcttgtaaggtttttgaagaaaaagaaagttgaaattggagaatatgaaactag |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
44729995 |
ttaataccaataattatctcatgagctctcaaggctttgttccttggcttgtaaggtttttgaagaaaaagaaagttgaaattggagaagttgaaactag |
44729896 |
T |
|
| Q |
201 |
tttgcagataaatgaagaagagaggtttaatttttgtgagtttttgccagaaatgatggaggaaagagcagagtatttgaatttgagtaggcaattatca |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44729895 |
tttgcagataaatgaagaagagaggtttaatttttgtgagtttttgccagaaatgatggaggaaagagcagagtatttgaatttgagtaggcaattatca |
44729796 |
T |
|
| Q |
301 |
gggaaagggtggaagcctagcttggataccattaaggaaaagaaggttaagagaaagatatctggttggttat |
373 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44729795 |
gggaaagggtggaagcctagcttggatacaattaaggaaaagaaggttaagagaaagatatctggttggttat |
44729723 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 281 - 344
Target Start/End: Original strand, 39084251 - 39084314
Alignment:
| Q |
281 |
atttgagtaggcaattatcagggaaagggtggaagcctagcttggataccattaaggaaaagaa |
344 |
Q |
| |
|
|||||| |||||| | |||||||||||||||||||||||||||||||| |||||||| ||||| |
|
|
| T |
39084251 |
atttgaataggcagatttcagggaaagggtggaagcctagcttggatactattaaggagaagaa |
39084314 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University