View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8175_low_31 (Length: 388)
Name: NF8175_low_31
Description: NF8175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8175_low_31 |
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Alignment Details
Target: chr1 (Bit Score: 196; Significance: 1e-106; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 1 - 208
Target Start/End: Complemental strand, 11878390 - 11878183
Alignment:
| Q |
1 |
catgtccacgtatttgtggggttatgagcatgaattatagaatatggtacaaatatctaaccaaaatcaatattaaaaacatgatacccttaattataca |
100 |
Q |
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| T |
11878390 |
catgtccacgtatttgtggggttatgagcatgaattatagaatatggtacaaatatctaaccaaaatcaatattaaaaacatgatacccttaattataca |
11878291 |
T |
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| Q |
101 |
acttaattatgtaaatgtatataatgtatgaactggtgtgggcaatatgtggggggaagaagacagaatgaggaattattactatgccaatagtgcaagt |
200 |
Q |
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| T |
11878290 |
acttaattatgtaaatgtatataatgtatgaactggtgtgggcaatatgtggggggaagaagacagaatgaggagttattactatgccaatagtggaagt |
11878191 |
T |
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| Q |
201 |
tcaacacc |
208 |
Q |
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| T |
11878190 |
tcatcacc |
11878183 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 261 - 373
Target Start/End: Complemental strand, 11878129 - 11878017
Alignment:
| Q |
261 |
aagccatgtgacttctcaataatgagattaacatgtgagatataatgttgtcaacaatgcccggaaaaagtgcaataatgagattaacattgcagctttt |
360 |
Q |
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| T |
11878129 |
aagccatgtgacttctcaataatgagattaacatgtgagatataatgttgtcaacaatgcccggaaaaagtgcaataatgagattaacattgcagctttt |
11878030 |
T |
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| Q |
361 |
gatggagaaaagt |
373 |
Q |
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| T |
11878029 |
gatggagaaaagt |
11878017 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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