View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8175_low_33 (Length: 377)
Name: NF8175_low_33
Description: NF8175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8175_low_33 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 340; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 19 - 377
Target Start/End: Complemental strand, 46762934 - 46762573
Alignment:
| Q |
19 |
aattcatcaaacaacatatagacataacagttaacaacttgcaatatgcaaacaccagcataataaaatattgaaataataataattgtcaaaaaccttg |
118 |
Q |
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| T |
46762934 |
aattcatcaaacaacatatagacataacagttaacaacttgcaatatgcaaacaccagcataataaaatattgaaataataataattgtcaaaaaccttg |
46762835 |
T |
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| Q |
119 |
gtgttcttggaattctcatctgccattttgacacttctacttcatacacctccctagcaagtttctacaactcccaagccagtttctgatatttcagtga |
218 |
Q |
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| T |
46762834 |
gtgttcttggaattctcatctcccattttgacacttctacttcatacacctccctagcaagtttctacaactcccaagccagtttctgatatttcagtga |
46762735 |
T |
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| Q |
219 |
tattttgagttaagaaacaagaccaagttcatttgtttccttgttttcttcttgtaagtgctatgtatgatcttgctatactataatatttaaaagtgta |
318 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46762734 |
tattttgagttaagaaacaagaccaagttcatttgtttccttgttatcttcttgtaagtgctatgtatgatcttgctatactataatatttaaaagtgta |
46762635 |
T |
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| Q |
319 |
ctaagaagaaga---agaatgaagcaaattcccataaataagagagagaacaagaatagcac |
377 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46762634 |
ctaagaagaagaagaagaatgaagcaaattcccataaataagagagagaacaagaatagcac |
46762573 |
T |
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