View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8175_low_35 (Length: 363)

Name: NF8175_low_35
Description: NF8175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8175_low_35
NF8175_low_35
[»] chr1 (10 HSPs)
chr1 (7-344)||(6523402-6523739)
chr1 (85-246)||(47777796-47777957)
chr1 (177-283)||(47713344-47713450)
chr1 (177-283)||(47745927-47746033)
chr1 (175-283)||(47718138-47718246)
chr1 (126-280)||(6507062-6507216)
chr1 (126-280)||(6512963-6513117)
chr1 (180-240)||(6500273-6500333)
chr1 (126-274)||(6517368-6517516)
chr1 (175-283)||(47760259-47760367)
[»] scaffold0341 (2 HSPs)
scaffold0341 (126-280)||(1087-1241)
scaffold0341 (126-280)||(8741-8895)


Alignment Details
Target: chr1 (Bit Score: 318; Significance: 1e-179; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 7 - 344
Target Start/End: Original strand, 6523402 - 6523739
Alignment:
Q  7 tagattattctcattattcaatctttctcctaataataattttttcatcatcacagttagccaaagccgataacacaacacaaaacttccactatttctg 106  Q
    |||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  6523402 tagattcttttcattattcaatctttctcctaataataattttttcatcatcacagttagccaaagctgataacacaacacaaaacttccactatttctg 6523501  T
Q  107 taatcctaacaacgtaaccggtacctacacagccaacagtatctaccaaacaaaccttaaatcacttctgtccactctcacttccaacacgcaaatcaac 206  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6523502 taatcctaacaacgtaactggtacctacacagccaacagtatctaccaaacaaaccttaaatcacttctgtccactctcacttccaacacgcaaatcaac 6523601  T
Q  207 tatggtttctacaatttctcaaacggtgaaaacacaaacaaagtaaacgcaattggtctttgcagaggcgatgttaagacaaacgagtgtcttagttgcc 306  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6523602 tacggtttctacaatttctcaaacggtgaaaacacaaacaaagtaaacgcaattggtctttgcagaggcgatgttaagacaaacgagtgtcttagttgcc 6523701  T
Q  307 tcaatggttcaagtaacaatctcacacagctttgtcca 344  Q
    ||||||||||||||||||||||||||||||||||||||    
T  6523702 tcaatggttcaagtaacaatctcacacagctttgtcca 6523739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 85 - 246
Target Start/End: Original strand, 47777796 - 47777957
Alignment:
Q  85 cacaaaacttccactatttctgtaatcctaacaacgtaaccggtacctacacagccaacagtatctaccaaacaaaccttaaatcacttctgtccactct 184  Q
    ||||||||||||||||||||||| |||  | |||||  |  |||| ||||||| | ||||| | |||| |||||||||| ||  ||||| | ||||||||    
T  47777796 cacaaaacttccactatttctgtgatcacagcaacgagagaggtaactacacaacaaacagcacctacgaaacaaacctcaacacacttttatccactct 47777895  T
Q  185 cacttccaacacgcaaatcaactatggtttctacaatttctcaaacggtgaaaacacaaaca 246  Q
    || ||||||||| |||||||| || ||||||||||||||||||  ||| ||||||| |||||    
T  47777896 catttccaacacacaaatcaattacggtttctacaatttctcattcggcgaaaacataaaca 47777957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 177 - 283
Target Start/End: Complemental strand, 47713450 - 47713344
Alignment:
Q  177 tccactctcacttccaacacgcaaatcaactatggtttctacaatttctcaaacggtgaaaacacaaacaaagtaaacgcaattggtctttgcagaggcg 276  Q
    |||| ||||||||||||||| ||||||||||| |||||||||||||||||  | ||  |||||||  ||||||||||||| ||||| || |||||||| |    
T  47713450 tccaatctcacttccaacactcaaatcaactacggtttctacaatttctcttatggccaaaacaccgacaaagtaaacgccattggactctgcagaggag 47713351  T
Q  277 atgttaa 283  Q
    |||||||    
T  47713350 atgttaa 47713344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 177 - 283
Target Start/End: Complemental strand, 47746033 - 47745927
Alignment:
Q  177 tccactctcacttccaacacgcaaatcaactatggtttctacaatttctcaaacggtgaaaacacaaacaaagtaaacgcaattggtctttgcagaggcg 276  Q
    |||| ||||||||||||||| ||||||||||| |||||||||||||||||  | ||  |||||||  | ||||||||||| ||||| || |||||||| |    
T  47746033 tccaatctcacttccaacactcaaatcaactacggtttctacaatttctcttatggccaaaacactgataaagtaaacgccattggactctgcagaggag 47745934  T
Q  277 atgttaa 283  Q
    |||||||    
T  47745933 atgttaa 47745927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 175 - 283
Target Start/End: Complemental strand, 47718246 - 47718138
Alignment:
Q  175 tgtccactctcacttccaacacgcaaatcaactatggtttctacaatttctcaaacggtgaaaacacaaacaaagtaaacgcaattggtctttgcagagg 274  Q
    |||||| ||| |||||||||||  |||||||||| |||||||||||||||||  | ||  |||||||  |||||||||||||  |||| || ||||||||    
T  47718246 tgtccaatctaacttccaacacagaaatcaactacggtttctacaatttctcttatggccaaaacactgacaaagtaaacgccgttggcctctgcagagg 47718147  T
Q  275 cgatgttaa 283  Q
     ||||||||    
T  47718146 agatgttaa 47718138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 126 - 280
Target Start/End: Complemental strand, 6507216 - 6507062
Alignment:
Q  126 ggtacctacacagccaacagtatctaccaaacaaaccttaaatcacttctgtccactctcacttccaacacgcaaatcaactatggtttctacaatttct 225  Q
    |||| ||||||| ||||||| | |||||| |||||||| ||| | ||||| |||||||||||||||||||   | || ||||| |||||||| |||| ||    
T  6507216 ggtaactacacaaccaacagcacctaccacacaaacctcaaaacccttctatccactctcacttccaacaaagatattaactacggtttctataattcct 6507117  T
Q  226 caaacggtgaaaacacaaacaaagtaaacgcaattggtctttgcagaggcgatgt 280  Q
    |  | || | ||||||  ||||||||||||| ||||| || || ||||| |||||    
T  6507116 cttatggcgtaaacaccgacaaagtaaacgctattggactgtgtagaggagatgt 6507062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 126 - 280
Target Start/End: Complemental strand, 6513117 - 6512963
Alignment:
Q  126 ggtacctacacagccaacagtatctaccaaacaaaccttaaatcacttctgtccactctcacttccaacacgcaaatcaactatggtttctacaatttct 225  Q
    |||| ||||||| ||||||| | ||| || | |||||||||  | ||||| |||||||||||||||||||   | |||||||| |||||||| |||| ||    
T  6513117 ggtaactacacaaccaacagcacctatcacaaaaaccttaacacccttctatccactctcacttccaacaaagatatcaactacggtttctataattcct 6513018  T
Q  226 caaacggtgaaaacacaaacaaagtaaacgcaattggtctttgcagaggcgatgt 280  Q
    |  | ||   ||||||  ||||||||||||| ||||| ||||| ||||| |||||    
T  6513017 cttatggaataaacaccgacaaagtaaacgctattggactttgtagaggagatgt 6512963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 180 - 240
Target Start/End: Complemental strand, 6500333 - 6500273
Alignment:
Q  180 actctcacttccaacacgcaaatcaactatggtttctacaatttctcaaacggtgaaaaca 240  Q
    |||||||||||||||||  |||||||||| |||||||||||||| ||| | || |||||||    
T  6500333 actctcacttccaacacagaaatcaactacggtttctacaatttttcacatggcgaaaaca 6500273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 126 - 274
Target Start/End: Complemental strand, 6517516 - 6517368
Alignment:
Q  126 ggtacctacacagccaacagtatctaccaaacaaaccttaaatcacttctgtccactctcacttccaacacgcaaatcaactatggtttctacaatttct 225  Q
    |||| ||||||| ||||||| | |||||| |||||||||||  | ||| | |||| ||||||||||||||   |||||||||| |||||||| || | ||    
T  6517516 ggtatctacacaaccaacagcacctaccacacaaaccttaacacccttttatccattctcacttccaacaaagaaatcaactacggtttctataactcct 6517417  T
Q  226 caaacggtgaaaacacaaacaaagtaaacgcaattggtctttgcagagg 274  Q
    |  | ||   |||||   ||||||||||||||||||| || ||||||||    
T  6517416 cttatggcataaacagcgacaaagtaaacgcaattggactatgcagagg 6517368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 175 - 283
Target Start/End: Complemental strand, 47760367 - 47760259
Alignment:
Q  175 tgtccactctcacttccaacacgcaaatcaactatggtttctacaatttctcaaacggtgaaaacacaaacaaagtaaacgcaattggtctttgcagagg 274  Q
    |||||| ||| ||||||||| |  |||||||||| |||||||||||| | ||  | ||  |||||||  ||||||||||||| ||||| || || |||||    
T  47760367 tgtccaatctaacttccaacgcagaaatcaactacggtttctacaatatttcttatggccaaaacactgacaaagtaaacgccattggactctgtagagg 47760268  T
Q  275 cgatgttaa 283  Q
     ||||||||    
T  47760267 agatgttaa 47760259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0341 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: scaffold0341
Description:

Target: scaffold0341; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 126 - 280
Target Start/End: Complemental strand, 1241 - 1087
Alignment:
Q  126 ggtacctacacagccaacagtatctaccaaacaaaccttaaatcacttctgtccactctcacttccaacacgcaaatcaactatggtttctacaatttct 225  Q
    |||| ||||||| ||||||| | |||||| |||||||| ||| | ||||| |||||||||||||||||||   | || ||||| |||||||| |||| ||    
T  1241 ggtaactacacaaccaacagcacctaccacacaaacctcaaaacccttctatccactctcacttccaacaaagatattaactacggtttctataattcct 1142  T
Q  226 caaacggtgaaaacacaaacaaagtaaacgcaattggtctttgcagaggcgatgt 280  Q
    |  | || | ||||||  ||||||||||||| ||||| || || ||||| |||||    
T  1141 cttatggcgtaaacaccgacaaagtaaacgctattggactgtgtagaggagatgt 1087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0341; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 126 - 280
Target Start/End: Complemental strand, 8895 - 8741
Alignment:
Q  126 ggtacctacacagccaacagtatctaccaaacaaaccttaaatcacttctgtccactctcacttccaacacgcaaatcaactatggtttctacaatttct 225  Q
    |||| ||||||| ||||||| | |||||| |||||||| ||| | ||||| |||||||||||||||||||   | || ||||| |||||||| |||| ||    
T  8895 ggtaactacacaaccaacagcacctaccacacaaacctcaaaacccttctatccactctcacttccaacaaagatattaactacggtttctataattcct 8796  T
Q  226 caaacggtgaaaacacaaacaaagtaaacgcaattggtctttgcagaggcgatgt 280  Q
    |  | || | ||||||  ||||||||||||| ||||| || || ||||| |||||    
T  8795 cttatggcgtaaacaccgacaaagtaaacgctattggactgtgtagaggagatgt 8741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University