View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8175_low_36 (Length: 355)
Name: NF8175_low_36
Description: NF8175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8175_low_36 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 240; Significance: 1e-133; HSPs: 14)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 1 - 329
Target Start/End: Original strand, 27523891 - 27524227
Alignment:
| Q |
1 |
atatacttcaaatggtgtcgtagatagataatgcataattcttgtgcataagcatcatataattgatagacttgaaagtacaaaccacagacatgtagaa |
100 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27523891 |
atatacttcaaatggtgtagtagatagataatgcataattcttgtgcaaaagcatcatataattgatagacttgaaagtacaaaccacagacatgtagaa |
27523990 |
T |
|
| Q |
101 |
tggtttctgttgatcaattgttatccatagccatgtagtcacttaccagctggacatcagcattatcataatgaagaaaacatgtctaaagcatgtttca |
200 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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|
| T |
27523991 |
tggtttatgttgatcaattgttatccatagccatgtagacacttaccagctggacatcagcattatcataatgaagaaaacatgtctgaagcatgtttac |
27524090 |
T |
|
| Q |
201 |
aacattatgaagtacaccaattaaatcatcaacaaatatgaggtt--------gcacatctcatttggtagcaagtggaagctttgtattggacattgtt |
292 |
Q |
| |
|
| ||||||||| | |||||||||||||| || |||||||| ||| ||||||||||||||||||||| |||||||||||||||||| |||||| |
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|
| T |
27524091 |
gaaattatgaaggaaaccaattaaatcatgaagaaatatgacgttgcacttgagcacatctcatttggtagcaattggaagctttgtattggatattgtt |
27524190 |
T |
|
| Q |
293 |
taagaaggtagggtacactcttagacaacaccacatg |
329 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
27524191 |
taagaaggtagggtacactctaagacaacaccacatg |
27524227 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 5 - 336
Target Start/End: Original strand, 27514265 - 27514595
Alignment:
| Q |
5 |
acttcaaatggtgtcgtagatagataatgcataattcttgtgcataagcatcatataattgatagacttgaaagtacaaaccacagacatgtagaatggt |
104 |
Q |
| |
|
||||||| || ||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| || ||||| |||| ||||||||| |
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|
| T |
27514265 |
acttcaagtgttgtagtagatagataatgcataattcttgagcataagcatcatataattgatagacttgaaagta-aagccacaaacatatagaatggt |
27514363 |
T |
|
| Q |
105 |
ttctgttgatcaattgttatccatagccatgtagtcacttaccagctggacatcagcattatcataatgaagaaaacatgtctaaagcatgtttcaaaca |
204 |
Q |
| |
|
|| ||||| | ||||||||| || || | ||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||| || | |
|
|
| T |
27514364 |
ttatgttgttatattgttatctatggcattatagtcacttactagctggacatcagcattatcataatgcagaaaacatgtctaaagcatgtttacaaaa |
27514463 |
T |
|
| Q |
205 |
ttatgaagtacaccaattaaatcatcaacaaatatgaggttgcacatctcatttggtagcaagtggaagctttgtattggaca-ttgtttaagaaggtag |
303 |
Q |
| |
|
||||||||||||||||||||||||| || |||||||||| || |||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
27514464 |
ttatgaagtacaccaattaaatcatgaagaaatatgaggctg-acatctcatttggtagcaagtggaagctttgtattggacatttgtttaagaaggtag |
27514562 |
T |
|
| Q |
304 |
ggtacactcttagacaacaccacatgagacctt |
336 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
27514563 |
ggtacactcttagacaacaccacatgagacctt |
27514595 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 336
Target Start/End: Complemental strand, 27469109 - 27468766
Alignment:
| Q |
1 |
atatacttcaaatggtgtcgtagatagataatgcataattcttgtgcataagcatcatataattgatagacttgaaagtacaaaccacagacatgtagaa |
100 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||| | | ||||||||||| || |||||||||||||||| || |||||||||||||||| |
|
|
| T |
27469109 |
atatacttcaaatggtgtagtagatagataatgcataattcttgagtagaagcatcatatgatagatagacttgaaagtagaa-ccacagacatgtagaa |
27469011 |
T |
|
| Q |
101 |
tggtttctgttgatcaattgttatccatagccatgtagtcacttaccagctggacatcagcattatcataatgaagaaaacatgtctaaagcatgtttca |
200 |
Q |
| |
|
|||||| ||||||| |||||||||||| ||| | |||||||||||||||| ||||| |||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
27469010 |
tggtttgagttgatctattgttatccatggccttatagtcacttaccagcttcacatcggcattatcataatgaagaaaacatgtctgaagcatgtttac |
27468911 |
T |
|
| Q |
201 |
aacattatgaagtacaccaattaaatcatcaacaaatatgaggtt--------gcacatctcatttggtagcaagtggaagctttgtattggaca-ttgt |
291 |
Q |
| |
|
|| |||||||||||||||||||||||||| || |||||||||| | |||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
27468910 |
aaaattatgaagtacaccaattaaatcatgaagaaatatgaggctgcacttgagcacatctcatttggtagcaagtggaagctttgtattggacatttgt |
27468811 |
T |
|
| Q |
292 |
ttaagaaggtagggtacactcttagacaacaccacatgagacctt |
336 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27468810 |
ttaagaaggtagggtacactcttagacaacaccacatgagacctt |
27468766 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 1 - 329
Target Start/End: Complemental strand, 27476339 - 27476006
Alignment:
| Q |
1 |
atatacttcaaatggtgtcgtagatagataatgcataattcttgtgcataagcatcatataattgatagacttgaaagtacaaaccacagacatgtagaa |
100 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
27476339 |
atatacttcaaatggtgtagtagatagataatgcataattcttgagcagaagcatcatataattgatagacttgaaagtac-aaccacagacatgtagaa |
27476241 |
T |
|
| Q |
101 |
tggtttctgttgatcaattgttatccatagccatgtagtcacttaccagctggacatcagcattatcataatgaagaaaacatgtctaaagcatgtttca |
200 |
Q |
| |
|
|||||| |||||||| |||||||||||| || | |||||| |||||||| ||||| |||||||||||||||||||||||||||| ||||||| || |
|
|
| T |
27476240 |
tggtttatgttgatctattgttatccatgtccttagagtcacataccagcttcacatcggcattatcataatgaagaaaacatgtctgaagcatgcttac |
27476141 |
T |
|
| Q |
201 |
aacattatgaagtacaccaattaaatcatcaacaaatatgagg------ttg--cacatctcatttggtagcaagtggaagctttgtattggacattgtt |
292 |
Q |
| |
|
|| ||||| || | ||||||||||| ||||||||||||| ||| ||||||| |||| |||||||||||||||||||||||||||||||| |
|
|
| T |
27476140 |
aaaattat---tgacgctaattaaatcatgaacaaatatgaggctatacttgatcacatcttattttttagcaagtggaagctttgtattggacattgtt |
27476044 |
T |
|
| Q |
293 |
taag-aaggtagggtacactcttagacaacaccacatg |
329 |
Q |
| |
|
|| | ||||||||||||||||| |||||||||| |||| |
|
|
| T |
27476043 |
taggaaaggtagggtacactctaagacaacaccccatg |
27476006 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 1 - 248
Target Start/End: Original strand, 27489479 - 27489723
Alignment:
| Q |
1 |
atatacttcaaatggtgtcgtagatagataatgcataattcttgtgcataagcatcatataattgatagacttgaaagtacaaaccacagacatgtagaa |
100 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
27489479 |
atatacttcaaatggtgtagtagatagataatgcataattcttgtgcagaagcatcatataattgatagacttgaaagtac-aaccacagacatgtagaa |
27489577 |
T |
|
| Q |
101 |
tggtttctgttgatcaattgttatccatagccatgtagtcacttaccagctggacatcagcattatcataatgaagaaaacatgtctaaagcatgtttca |
200 |
Q |
| |
|
||| | || ||||| || |||| ||| ||| | || ||||| |||||||||||||| |||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
27489578 |
tggcctatgatgatccataattatacattgccttataatcactaaccagctggacatcgacattttcataatgaagaaaacatgtctaaagcatgtttac |
27489677 |
T |
|
| Q |
201 |
aacattatgaagtacaccaattaaatcatcaacaaatatgaggttgca |
248 |
Q |
| |
|
|| |||| |||| ||||||||| ||| || ||||||||||||||| |
|
|
| T |
27489678 |
aaaattacaaagt--accaattaatgcatgaataaatatgaggttgca |
27489723 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 109; E-Value: 9e-55
Query Start/End: Original strand, 20 - 212
Target Start/End: Original strand, 27508295 - 27508486
Alignment:
| Q |
20 |
gtagatagataatgcataattcttgtgcataagcatcatataattgatagacttgaaagtacaaaccacagacatgtagaatggtttctgttgatcaatt |
119 |
Q |
| |
|
|||| |||||||||||||||||||| | | ||||||||||||||||||||||||| ||||| || ||||| ||||||||||||||||||||||||| ||| |
|
|
| T |
27508295 |
gtagctagataatgcataattcttgagaagaagcatcatataattgatagacttgtaagtagaa-ccacaaacatgtagaatggtttctgttgatctatt |
27508393 |
T |
|
| Q |
120 |
gttatccatagccatgtagtcacttaccagctggacatcagcattatcataatgaagaaaacatgtctaaagcatgtttcaaacattatgaag |
212 |
Q |
| |
|
|||||| || ||| | ||||||||||| ||||||||||||||||| |||||||||||||||||||||| ||||||||| || ||||||||| |
|
|
| T |
27508394 |
gttatctatggccttatagtcacttactagctggacatcagcattgtcataatgaagaaaacatgtcttcagcatgtttataaaattatgaag |
27508486 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 108 - 329
Target Start/End: Original strand, 27503399 - 27503626
Alignment:
| Q |
108 |
tgttgatcaattgttatccatagccatgtagtcacttaccagctggacatcagcattatcataatgaagaaaacatgtctaaagcatgtttcaaacatta |
207 |
Q |
| |
|
|||||||| |||||||||||| ||| | |||||||||| ||||||||||||| ||||||||||||||||||||||||||| |||||||||| || |||| |
|
|
| T |
27503399 |
tgttgatctattgttatccattgccttatagtcacttatcagctggacatcaacattatcataatgaagaaaacatgtctgaagcatgtttacaaaatta |
27503498 |
T |
|
| Q |
208 |
tgaagtacaccaattaaatcatcaacaaatatgagg------ttg--cacatctcatttggtagcaagtggaagctttgtattggacattgtttaag-aa |
298 |
Q |
| |
|
| || | ||||||||||| ||||||||||||| ||| ||||||| |||| |||||||||||||||||||||||||||||||||| | || |
|
|
| T |
27503499 |
t---tgacgctaattaaatcatgaacaaatatgaggctatacttgatcacatcttattttttagcaagtggaagctttgtattggacattgtttaggaaa |
27503595 |
T |
|
| Q |
299 |
ggtagggtacactcttagacaacaccacatg |
329 |
Q |
| |
|
||||||| ||||||| ||||||||||||||| |
|
|
| T |
27503596 |
ggtaggggacactctaagacaacaccacatg |
27503626 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 248 - 329
Target Start/End: Original strand, 27508488 - 27508569
Alignment:
| Q |
248 |
acatctcatttggtagcaagtggaagctttgtattggacattgtttaagaaggtagggtacactcttagacaacaccacatg |
329 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||| |
|
|
| T |
27508488 |
acatctcatttggtaggaagtggaagctttgtattggacattgtttaagaaggtagggtacactctaagacagcaccacatg |
27508569 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 91 - 198
Target Start/End: Complemental strand, 27557081 - 27556974
Alignment:
| Q |
91 |
acatgtagaatggtttctgttgatcaattgttatccatagccatgtagtcacttaccagctggacatcagcattatcataatgaagaaaacatgtctaaa |
190 |
Q |
| |
|
|||||||||||||||| |||||||| |||||||||||| || | || |||||||||||||||| |||| || ||||||||||||||||||||||||||| |
|
|
| T |
27557081 |
acatgtagaatggtttatgttgatctattgttatccattgcgttataatcacttaccagctggaaatcaacactatcataatgaagaaaacatgtctaaa |
27556982 |
T |
|
| Q |
191 |
gcatgttt |
198 |
Q |
| |
|
|||||||| |
|
|
| T |
27556981 |
gcatgttt |
27556974 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 91 - 186
Target Start/End: Complemental strand, 27497971 - 27497875
Alignment:
| Q |
91 |
acatgtagaatggtttctgttgatcaattgttatccatagccatgtag-tcacttaccagctggacatcagcattatcataatgaagaaaacatgtc |
186 |
Q |
| |
|
|||||||||||||||| |||||||| ||||||||||| ||| | || ||||||||||||| ||||||| |||||||||||||||||||||||||| |
|
|
| T |
27497971 |
acatgtagaatggtttatgttgatctattgttatccactgccttatatctcacttaccagctagacatcaacattatcataatgaagaaaacatgtc |
27497875 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 251 - 329
Target Start/End: Original strand, 27517369 - 27517448
Alignment:
| Q |
251 |
tctcatttggtagcaagtggaagctttgtattggacattgtttaagaaggtagggtacactctt-agacaacaccacatg |
329 |
Q |
| |
|
||||| ||||| |||||||||||||||| |||| |||||||| ||||||| ||||||| |||| ||||||| ||||||| |
|
|
| T |
27517369 |
tctcaattggttccaagtggaagctttgtgttggccattgtttgagaaggtggggtacaatcttaagacaacgccacatg |
27517448 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 148 - 213
Target Start/End: Original strand, 27506260 - 27506325
Alignment:
| Q |
148 |
agctggacatcagcattatcataatgaagaaaacatgtctaaagcatgtttcaaacattatgaagt |
213 |
Q |
| |
|
||||||||||||||| | | |||||||||||||||||||| || ||||||| || |||||||||| |
|
|
| T |
27506260 |
agctggacatcagcactttgataatgaagaaaacatgtctgaaacatgtttacaaaattatgaagt |
27506325 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 148 - 198
Target Start/End: Complemental strand, 27479464 - 27479414
Alignment:
| Q |
148 |
agctggacatcagcattatcataatgaagaaaacatgtctaaagcatgttt |
198 |
Q |
| |
|
||||||||||||||| || |||||||||||||||||||| || ||||||| |
|
|
| T |
27479464 |
agctggacatcagcaccatgataatgaagaaaacatgtctgaaacatgttt |
27479414 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 141 - 215
Target Start/End: Complemental strand, 27554174 - 27554101
Alignment:
| Q |
141 |
acttaccagctggacatcagcattatcataatgaagaaaacatgtctaaagcatgtttcaaacattatgaagtac |
215 |
Q |
| |
|
|||||||||||||| |||| |||||||| ||||||| |||||||||| | ||||||| || |||||||||||| |
|
|
| T |
27554174 |
acttaccagctggagatcaacattatcaaaatgaag-aaacatgtcttagacatgtttgcaaaattatgaagtac |
27554101 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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