View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8175_low_37 (Length: 354)
Name: NF8175_low_37
Description: NF8175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8175_low_37 |
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| [»] scaffold0491 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 289; Significance: 1e-162; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 10 - 335
Target Start/End: Complemental strand, 1110383 - 1110056
Alignment:
| Q |
10 |
tagcatagaggaatttaaaggtttcaacgaattgatattattctgcattacactttttgtactaactgttgtcgaattgtggctataggcctataacact |
109 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
1110383 |
tagcatagaggaatttaaaggtttcaatgaattgatattattctgcattacactttttgtactaactgttgtcgaattgtggctataggcctatagcact |
1110284 |
T |
|
| Q |
110 |
gtagtgtaatttgaacaaacctatattttcttgaatttgttgttgacaagagtaaa--atattggacatttgggcttgttagtttcatgcccctttatgc |
207 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||| |
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| T |
1110283 |
gtagtgtaatttgaacaaacctatattttcttgaatttgttgttgacaagagtggtttatattggacatttggacttgttagtttcatgcccctttatgc |
1110184 |
T |
|
| Q |
208 |
agtagcaatacactcatctttcaacatttgatgtgtttactgccaaacattctatgcagaattttaaatggaacgctggagtagagttttgagagtcgcg |
307 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
1110183 |
agtagcaatacactcatctttcaacatttgatgtgtttactgccaaacattctatgcagaattttaaatggaacgctggagtagagttttgagagtcccg |
1110084 |
T |
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| Q |
308 |
ttgctttctaacagcgagacattcctta |
335 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
1110083 |
ttgctttctaacagcgagacattcctta |
1110056 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 19 - 210
Target Start/End: Original strand, 1539296 - 1539481
Alignment:
| Q |
19 |
ggaatttaaaggtttcaacgaattgatattattctgcattacactttttgtactaactgttgtcgaattgtggctataggcctataacactgtagtgtaa |
118 |
Q |
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| T |
1539296 |
ggaatttaaaggtttaaataaattggtattattctgcaatacactttttgtaccaactgttgccaaattgtggctatag--------cactttagtgtag |
1539387 |
T |
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| Q |
119 |
tttgaacaaacctatattttcttgaatttgttgttgacaagagt--aaaatattggacatttgggcttgttagtttcatgcccctttatgcagt |
210 |
Q |
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| T |
1539388 |
ttagaacaaaattatattttcttgaatttgttgttgacaagagtggtttatattggacatttggacttgttagtttcatgctcctttatgcagt |
1539481 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 248 - 299
Target Start/End: Original strand, 1539481 - 1539532
Alignment:
| Q |
248 |
tgccaaacattctatgcagaattttaaatggaacgctggagtagagttttga |
299 |
Q |
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| T |
1539481 |
tgccaaacattctatgcagcatttttaatggaacgctggagtggagttttga |
1539532 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0491 (Bit Score: 67; Significance: 1e-29; HSPs: 2)
Name: scaffold0491
Description:
Target: scaffold0491; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 175 - 289
Target Start/End: Original strand, 4577 - 4691
Alignment:
| Q |
175 |
atttgggcttgttagtttcatgcccctttatgcagtagcaatacactcatctttcaacatttgatgtgtttactgccaaacattctatgcagaattttaa |
274 |
Q |
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|||||| || ||||||||||||| |||||||||||||||||| |||||| |||| ||||||| ||||||||| | |||| |||||||||| ||||||| | |
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| T |
4577 |
atttggactcgttagtttcatgctcctttatgcagtagcaattcactcacctttgaacattttatgtgtttaataccaatcattctatgccgaattttta |
4676 |
T |
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| Q |
275 |
atggaacgctggagt |
289 |
Q |
| |
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||||||||||||||| |
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| T |
4677 |
atggaacgctggagt |
4691 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0491; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 19 - 97
Target Start/End: Original strand, 4486 - 4564
Alignment:
| Q |
19 |
ggaatttaaaggtttcaacgaattgatattattctgcattacactttttgtactaactgttgtcgaattgtggctatag |
97 |
Q |
| |
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||||||||||||||| || ||||| |||||||||||| |||||||||||||| |||||||||| |||||||||||||| |
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| T |
4486 |
ggaatttaaaggtttaaataaattggtattattctgcaatacactttttgtaccaactgttgtcaaattgtggctatag |
4564 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 67; Significance: 1e-29; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 175 - 289
Target Start/End: Original strand, 18747736 - 18747850
Alignment:
| Q |
175 |
atttgggcttgttagtttcatgcccctttatgcagtagcaatacactcatctttcaacatttgatgtgtttactgccaaacattctatgcagaattttaa |
274 |
Q |
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|||||| || ||||||||||||| |||||||||||||||||| |||||| |||| ||||||| ||||||||| | |||| |||||||||| ||||||| | |
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| T |
18747736 |
atttggactcgttagtttcatgctcctttatgcagtagcaattcactcacctttgaacattttatgtgtttaataccaatcattctatgccgaattttta |
18747835 |
T |
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| Q |
275 |
atggaacgctggagt |
289 |
Q |
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||||||||||||||| |
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| T |
18747836 |
atggaacgctggagt |
18747850 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 187 - 289
Target Start/End: Original strand, 18737890 - 18737992
Alignment:
| Q |
187 |
tagtttcatgcccctttatgcagtagcaatacactcatctttcaacatttgatgtgtttactgccaaacattctatgcagaattttaaatggaacgctgg |
286 |
Q |
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|
||||||||||| |||||||||||||||||| |||||| | || ||||||| ||||||||| |||||| |||||||||| ||||||| ||||||||||||| |
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| T |
18737890 |
tagtttcatgctcctttatgcagtagcaattcactcaccattgaacattttatgtgtttaatgccaatcattctatgccgaatttttaatggaacgctgg |
18737989 |
T |
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| Q |
287 |
agt |
289 |
Q |
| |
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||| |
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| T |
18737990 |
agt |
18737992 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 187 - 289
Target Start/End: Original strand, 18742784 - 18742886
Alignment:
| Q |
187 |
tagtttcatgcccctttatgcagtagcaatacactcatctttcaacatttgatgtgtttactgccaaacattctatgcagaattttaaatggaacgctgg |
286 |
Q |
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||||||||||| |||||||||||||||||| |||||| |||| ||||||| ||||||||| |||||| |||||||||| ||||||| |||||||| |||| |
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| T |
18742784 |
tagtttcatgctcctttatgcagtagcaattcactcacctttgaacattttatgtgtttaatgccaatcattctatgccgaatttttaatggaacactgg |
18742883 |
T |
|
| Q |
287 |
agt |
289 |
Q |
| |
|
||| |
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|
| T |
18742884 |
agt |
18742886 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 19 - 97
Target Start/End: Original strand, 18737787 - 18737865
Alignment:
| Q |
19 |
ggaatttaaaggtttcaacgaattgatattattctgcattacactttttgtactaactgttgtcgaattgtggctatag |
97 |
Q |
| |
|
||||||||||||||| || ||||| |||||||||||| |||||||||||||| |||||||||| |||||||||||||| |
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| T |
18737787 |
ggaatttaaaggtttaaaaaaattggtattattctgcaatacactttttgtaccaactgttgtcaaattgtggctatag |
18737865 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 19 - 97
Target Start/End: Original strand, 18742681 - 18742759
Alignment:
| Q |
19 |
ggaatttaaaggtttcaacgaattgatattattctgcattacactttttgtactaactgttgtcgaattgtggctatag |
97 |
Q |
| |
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||||||||||||||| || ||||| |||||||||||| |||||||||||||| |||||||||| |||||||||||||| |
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| T |
18742681 |
ggaatttaaaggtttaaataaattggtattattctgcaatacactttttgtaccaactgttgtcaaattgtggctatag |
18742759 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 19 - 97
Target Start/End: Original strand, 18747645 - 18747723
Alignment:
| Q |
19 |
ggaatttaaaggtttcaacgaattgatattattctgcattacactttttgtactaactgttgtcgaattgtggctatag |
97 |
Q |
| |
|
||||||||||||||| || ||||| |||||||||||| |||||||||||||| |||||||||| |||||||||||||| |
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|
| T |
18747645 |
ggaatttaaaggtttaaataaattggtattattctgcaatacactttttgtaccaactgttgtcaaattgtggctatag |
18747723 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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