View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8175_low_39 (Length: 345)
Name: NF8175_low_39
Description: NF8175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8175_low_39 |
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Alignment Details
Target: chr8 (Bit Score: 247; Significance: 1e-137; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 19 - 312
Target Start/End: Original strand, 8167520 - 8167816
Alignment:
| Q |
19 |
gatcattgcagtttttgcattgcaaagaatagatagttctgtaactttcttgaagagccctagtttgcgttttgagaaggaatcgcggggcttgtttgat |
118 |
Q |
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| T |
8167520 |
gatcattgcagtttttgcattgcataggatagatagttctgtaactttgttgaagagccctagtttgcgttttgagaaggtatcgaggggcttgtttgat |
8167619 |
T |
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| Q |
119 |
tgttctgctttcttgattttaatggtt---ctcttacgtttgttgttgctttttgttgatgtgttgtttccgtctgaagaagccattggatctttcttcc |
215 |
Q |
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| T |
8167620 |
tgttctgctttcttgattttaatggttgatctcttacgtttgttgttgctttttgttgatgtgttgtttccgtttgaagaagccattggatctttcttcc |
8167719 |
T |
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| Q |
216 |
aagaggagaaagagggaagaaagaactcaataaccaaatatgaaagaaaactttgttttgttcccaaaatatggaactgactctttcttttttagaa |
312 |
Q |
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| T |
8167720 |
aagaggagaaagagggaagaaagaactcaataaccaaatatgaaagaaaactttgttttggtcccaaaatatggaaccgactctttcttttatagaa |
8167816 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 33 - 186
Target Start/End: Original strand, 8999198 - 8999351
Alignment:
| Q |
33 |
ttgcattgcaaagaatagatagttctgtaactttcttgaagagccctagtttgcgttttgagaaggaatcgcggggcttgtttgattgttctgctttctt |
132 |
Q |
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| T |
8999198 |
ttgcattgcataaaatgaatagttatgtgactttgttgaagagtcctaatttgcgttttgagaaggtatcatccagcttgttagattcttctactttctt |
8999297 |
T |
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| Q |
133 |
gattttaatggttctcttacgtttgttgttgctttttgttgatgtgttgtttcc |
186 |
Q |
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| T |
8999298 |
aatttcattgattctcttaggtgtgtcgttgtgttttgttaatatgatgtttcc |
8999351 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 75; Significance: 2e-34; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 19 - 220
Target Start/End: Original strand, 50707587 - 50707789
Alignment:
| Q |
19 |
gatcattgcagtttttgcattgcaaagaatagatagttctgtaactttcttgaagagccctagtttgcgttttgagaaggaatcgcggggcttgtttgat |
118 |
Q |
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||||| ||| |||||||||||||| ||||| |||| |||||| ||||| |||||||| ||||||||||| ||||| |||| ||| || ||||||| ||| |
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| T |
50707587 |
gatcagtgcggtttttgcattgcatagaatggataattctgttactttgttgaagagtcctagtttgcgctttgaaaaggtatcacgccgcttgttcgat |
50707686 |
T |
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| Q |
119 |
tgttctgctttcttgattttaatggttctcttacgtttgttgttgctttttgttgatgtgttgtttccgtctg-aagaagccattggatctttcttccaa |
217 |
Q |
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| T |
50707687 |
ggctttgctttcttgatttcaatggttttcttccgtgagttgcttcgttttgttgacgtgttgtttccatccgtaagaagccattgaatctttcttccaa |
50707786 |
T |
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| Q |
218 |
gag |
220 |
Q |
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||| |
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| T |
50707787 |
gag |
50707789 |
T |
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