View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8175_low_43 (Length: 333)
Name: NF8175_low_43
Description: NF8175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8175_low_43 |
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Alignment Details
Target: chr5 (Bit Score: 250; Significance: 1e-139; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 51 - 323
Target Start/End: Complemental strand, 1959744 - 1959469
Alignment:
| Q |
51 |
caattgatgaacaaattttaattaagttgaaaccaaatttcaaattaccggagtgtt---aacatctattaatgttttctcaaaacccataaacctcatc |
147 |
Q |
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| T |
1959744 |
caattgatgaacaaattttaattaagttgaaaccgaatttcaaattaccggagtgttgttaacacctattaatgttttctcaaaacccataaacctcatc |
1959645 |
T |
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| Q |
148 |
tgtttagtttatgaaagcaagtgagaggaaggaaaaggagtagttttgatggaagtcaagagtttgaacttgataaacctattgcaatcttgcataacaa |
247 |
Q |
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| T |
1959644 |
tgtttagtttatgaaagcaagtgagaggaaggaaaaggaggagttttgatggaagtcaagagtttgaacttgataaacctattgcaatcttgcataacaa |
1959545 |
T |
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| Q |
248 |
acaaatcactatcttccgctaaaatcatccacgctcgaatcttccgtttcacccttttctccgacacatttctctg |
323 |
Q |
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| T |
1959544 |
acaaatcactatcttccgctaaaatcatccacgctcgaatcttccgtttcacccttttctccgacacatttctctg |
1959469 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 17 - 48
Target Start/End: Complemental strand, 1959794 - 1959763
Alignment:
| Q |
17 |
aattcttatattaacgaataatgttttctcaa |
48 |
Q |
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| T |
1959794 |
aattcttatattaacgaataatgttttctcaa |
1959763 |
T |
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