View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8175_low_5 (Length: 618)
Name: NF8175_low_5
Description: NF8175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8175_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 306; Significance: 1e-172; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 16 - 406
Target Start/End: Original strand, 37592493 - 37592880
Alignment:
| Q |
16 |
ggaaacactgcaatgaatgctgctannnnnnnatattattggcgtagtgatgaaaacgtactcaaataaatacatttgtgataaacatggatttcacata |
115 |
Q |
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| T |
37592493 |
ggaaacactgcaatgaatgctgctatttttttatattattggcgtagtgatgaaaacgtactcaaataaatacattcgtgataaacatggatttcacata |
37592592 |
T |
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| Q |
116 |
aaatgttctcagatttgaaccactaacatttaacaaatgcaagtattgctatagaagaaggaaggtagtttatttaggtttgattactttggaaatctct |
215 |
Q |
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| T |
37592593 |
aaatgttctcagatttgaaccactaacatttaacaaatgcaagtattgctatagaa---ggaaggtagtttatttaggtttgattactttggaaatctct |
37592689 |
T |
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| Q |
216 |
taataattcaaagatttttaacatctagaacctagctggatcttatctgtaagactgtagcaaacatgatcaagaggatacaagaggaaattggcagata |
315 |
Q |
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| T |
37592690 |
taataattcaaagatttttaacatctagaacctagctggatcttatctgtaagactgtagcaaacatgatcaagaggatacaagaggaaattggcagatc |
37592789 |
T |
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| Q |
316 |
tttaacattgagaatcagcatttaaatataggnnnnnnntcaatggacatttgaatgannnnnnncttttaagggaatcactcctcatgca |
406 |
Q |
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| T |
37592790 |
tttaacattgagaatcagcatttaaatataggaaaaaaatcaatggacatttgaatgatttttttcttttaagggaatcactcctcatgca |
37592880 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 96; E-Value: 9e-47
Query Start/End: Original strand, 492 - 595
Target Start/End: Original strand, 37592983 - 37593086
Alignment:
| Q |
492 |
atatgggtgttgtttgattttatatcttcttaccatgttattaacacgacgagcaatcaaaatatttagacactttattattttctacactcatttgaga |
591 |
Q |
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| T |
37592983 |
atatgggtgttgtttgattttatatcttcttaccatgttattaacacgacgagcaatcaaaatatttagacactttattattttttacactcatttaaga |
37593082 |
T |
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| Q |
592 |
ttta |
595 |
Q |
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|||| |
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| T |
37593083 |
ttta |
37593086 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 206 - 265
Target Start/End: Original strand, 37585564 - 37585623
Alignment:
| Q |
206 |
ggaaatctcttaataattcaaagatttttaacatctagaacctagctggatcttatctgt |
265 |
Q |
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|||||||||||||||||||||||| |||||||||||| |||| ||||||||||| |||| |
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| T |
37585564 |
ggaaatctcttaataattcaaagacatttaacatctaggacctggctggatcttacctgt |
37585623 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 172 - 235
Target Start/End: Original strand, 55117129 - 55117192
Alignment:
| Q |
172 |
gaaggaaggtagtttatttaggtttgattactttggaaatctcttaataattcaaagattttta |
235 |
Q |
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||||||||| | ||||||||| |||||| ||||||||||||| || |||||||||||||||||| |
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| T |
55117129 |
gaaggaaggcactttatttagttttgatcactttggaaatcttttgataattcaaagattttta |
55117192 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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