View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8175_low_50 (Length: 307)
Name: NF8175_low_50
Description: NF8175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8175_low_50 |
 | |
|
| [»] scaffold0274 (2 HSPs) |
| | |
|
| [»] scaffold0648 (1 HSPs) |
| | |
|
| [»] scaffold0640 (1 HSPs) |
| | |
|
| [»] scaffold0271 (1 HSPs) |
| | |
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Alignment Details
Target: chr3 (Bit Score: 276; Significance: 1e-154; HSPs: 29)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 16 - 291
Target Start/End: Original strand, 19401065 - 19401340
Alignment:
| Q |
16 |
gaagaaaatcctaaaaatgcagagaatgaagatgacgaatctataaaagaatcgttgtaccttggcatgggagtgggatttgcagtaggtttctggggga |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19401065 |
gaagaaaatcctaaaaatgcagagaatgaagatgacgaatctataaaagaatcgttgtaccttggcatgggagtgggatttgcagtaggtttctggggga |
19401164 |
T |
|
| Q |
116 |
tttgtggttctttgtttctcattagaaaatggaggcatgcatattttcggttcatatatggagtgggtaacaggctctatgtaactttgatggtaaagtt |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19401165 |
tttgtggttctttgtttctcattagaaaatggaggcatgcatattttcggttcatatatggagtgggtaacaggctctatgtaactttgatggtaaagtt |
19401264 |
T |
|
| Q |
216 |
aaatagctttcatagaagttgagcttttgctagtaaaggttagtgaacctaatttaagttgaattgatcatgatat |
291 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19401265 |
aaatagctttcatagaagttgagcttttgctagtaaaggttagtgaacctaatttaagttgaattgatcatgatat |
19401340 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 16 - 291
Target Start/End: Original strand, 17951162 - 17951437
Alignment:
| Q |
16 |
gaagaaaatcctaaaaatgcagagaatgaagatgacgaatctataaaagaatcgttgtaccttggcatgggagtgggatttgcagtaggtttctggggga |
115 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||| |||||| |||||||||| ||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
17951162 |
gaagaaaatcctaaaaatgcagagaatgaggatgatgaatctctaaaagaatcattgtaccttggtatgggagtgggatttgcagtaggtttctggggga |
17951261 |
T |
|
| Q |
116 |
tttgtggttctttgtttctcattagaaaatggaggcatgcatattttcggttcatatatggagtgggtaacaggctctatgtaactttgatggtaaagtt |
215 |
Q |
| |
|
||||||||||||||||||| ||| ||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
17951262 |
tttgtggttctttgtttcttattcgaaaatggaggcatgcatactttcggtttatatatggagtgggtaacaggctctatgtaactttgaaggtaaagtt |
17951361 |
T |
|
| Q |
216 |
aaatagctttcatagaagttgagcttttgctagtaaaggttagtgaacctaatttaagttgaattgatcatgatat |
291 |
Q |
| |
|
|||||||||| ||||||||||||| |||||| ||||||||||||||||| |||||||||||||||||| ||||| |
|
|
| T |
17951362 |
aaatagcttttgcagaagttgagcttctgctagaaaaggttagtgaacctactttaagttgaattgatcacgatat |
17951437 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 35 - 291
Target Start/End: Original strand, 18017380 - 18017636
Alignment:
| Q |
35 |
cagagaatgaagatgacgaatctataaaagaatcgttgtaccttggcatgggagtgggatttgcagtaggtttctgggggatttgtggttctttgtttct |
134 |
Q |
| |
|
|||||||||| ||||| ||||||||||||||||| ||||| || ||||||||||| || ||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
18017380 |
cagagaatgaggatgatgaatctataaaagaatcattgtatctaggcatgggagttggctttgcagcaggtttctgggggatttgtggttctttgtttct |
18017479 |
T |
|
| Q |
135 |
cattagaaaatggaggcatgcatattttcggttcatatatggagtgggtaacaggctctatgtaactttgatggtaaagttaaatagctttcatagaagt |
234 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||| || |||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
18017480 |
cattagaaaatggaggcatgcatattttcggtttatatatggagtgggtaacagactttatgtaactttgatggtaaagttaaatagctttcgtagaagt |
18017579 |
T |
|
| Q |
235 |
tgagcttttgctagtaaaggttagtgaacctaatttaagttgaattgatcatgatat |
291 |
Q |
| |
|
||||||| ||||| ||||| ||||||||| || |||||||||||||||||||||||| |
|
|
| T |
18017580 |
tgagcttctgctaataaagattagtgaacgtactttaagttgaattgatcatgatat |
18017636 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 16 - 290
Target Start/End: Original strand, 18109769 - 18110043
Alignment:
| Q |
16 |
gaagaaaatcctaaaaatgcagagaatgaagatgacgaatctataaaagaatcgttgtaccttggcatgggagtgggatttgcagtaggtttctggggga |
115 |
Q |
| |
|
||||||||| |||||| | | |||||||| ||||| ||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
18109769 |
gaagaaaattctaaaattactgagaatgaggatgatgaatctataaaagaatcattgtaccttggtatgggagtgggatttgcagtaggtttctggggga |
18109868 |
T |
|
| Q |
116 |
tttgtggttctttgtttctcattagaaaatggaggcatgcatattttcggttcatatatggagtgggtaacaggctctatgtaactttgatggtaaagtt |
215 |
Q |
| |
|
||||||||||||||||| | || || ||||||||||||||||| ||||| || |||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
18109869 |
tttgtggttctttgtttgttatcaggaaatggaggcatgcatactttcgttttatatatggagtgggtaacaggctctatgtaacattgatggtaaagtt |
18109968 |
T |
|
| Q |
216 |
aaatagctttcatagaagttgagcttttgctagtaaaggttagtgaacctaatttaagttgaattgatcatgata |
290 |
Q |
| |
|
||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18109969 |
gaatagcttttgctgaagttgagcttctgctagtaaaggttagtgaacctaatttaagttgaattgatcatgata |
18110043 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 151; E-Value: 7e-80
Query Start/End: Original strand, 35 - 253
Target Start/End: Original strand, 19352750 - 19352968
Alignment:
| Q |
35 |
cagagaatgaagatgacgaatctataaaagaatcgttgtaccttggcatgggagtgggatttgcagtaggtttctgggggatttgtggttctttgtttct |
134 |
Q |
| |
|
|||||||||||| ||| || || ||||||||||| ||||| || ||||||||||| |||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
19352750 |
cagagaatgaaggtgatgactccataaaagaatcattgtatctaggcatgggagttggatttgcagcaggtttctgggggatttgtggttctttgtttct |
19352849 |
T |
|
| Q |
135 |
cattagaaaatggaggcatgcatattttcggttcatatatggagtgggtaacaggctctatgtaactttgatggtaaagttaaatagctttcatagaagt |
234 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||| ||||| |
|
|
| T |
19352850 |
tattagaaaatggaggcatgcatattttcggtttatatatggagtgggtaacaggctttatgtaactttaatggtaaagttaaatagctttcgtagaata |
19352949 |
T |
|
| Q |
235 |
tgagcttttgctagtaaag |
253 |
Q |
| |
|
||||||| ||||||||||| |
|
|
| T |
19352950 |
tgagcttctgctagtaaag |
19352968 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 35 - 285
Target Start/End: Original strand, 19456654 - 19456903
Alignment:
| Q |
35 |
cagagaatgaagatgacgaatctataaaagaatcgttgtaccttggcatgggagtgggatttgcagtaggtttctgggggatttgtggttctttgtttct |
134 |
Q |
| |
|
|||||| ||||||||| || ||||||| |||||| ||| || ||| ||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19456654 |
cagagattgaagatgatgactctataagagaatcaatgtttctcggcttgggagttggatttgcagtaggtttctgggggatttgtggttctttgtttct |
19456753 |
T |
|
| Q |
135 |
cattagaaaatggaggcatgcatattttcggttcatatatggagtgggtaacaggctctatgtaactttgatggtaaagttaaatagctttcatagaagt |
234 |
Q |
| |
|
||||| ||||||||||||||||| ||| || | ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||| | |
|
|
| T |
19456754 |
tattaggaaatggaggcatgcatacttttgggttatatatggagtgggtaacagggtctatgtaactttgatggtaaagttaaatagctttcgcagaaat |
19456853 |
T |
|
| Q |
235 |
tgagcttttgctagtaaaggttagtgaacctaatttaagttgaattgatca |
285 |
Q |
| |
|
||| || ||| |||||||||||||||| || ||| |||| ||||||||| |
|
|
| T |
19456854 |
tgaactcctgc-agtaaaggttagtgaaactgctttcagtttaattgatca |
19456903 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 16 - 259
Target Start/End: Original strand, 18148157 - 18148400
Alignment:
| Q |
16 |
gaagaaaatcctaaaaatgcagagaatgaagatgacgaatctataaaagaatcgttgtaccttggcatgggagtgggatttgcagtaggtttctggggga |
115 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||| |||||||||| ||| |||||||| | ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18148157 |
gaagaaaatcctggaaatgcagagaatgaagatgatgaatctataagagagtcgttgtatttaggcatgggagtgggatttgcagtaggtttctggggga |
18148256 |
T |
|
| Q |
116 |
tttgtggttctttgtttctcattagaaaatggaggcatgcatattttcggttcatatatggagtgggtaacaggctctatgtaactttgatggtaaagtt |
215 |
Q |
| |
|
||||||||||||||||||| ||||| |||||||||||||| || |||||||| | || |||||||| || |||||||| ||| |||| |||||||| |
|
|
| T |
18148257 |
tttgtggttctttgtttcttattaggaaatggaggcatgcgtactttcggttagttgatagagtgggtgactatctctatgttactgtgatcgtaaagtt |
18148356 |
T |
|
| Q |
216 |
aaatagctttcatagaagttgagcttttgctagtaaaggttagt |
259 |
Q |
| |
|
||||||||||| |||| |||||| ||||||| ||||||||| |
|
|
| T |
18148357 |
aaatagctttcgccgaagctgagctcctgctagttaaggttagt |
18148400 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 35 - 262
Target Start/End: Original strand, 19382251 - 19382478
Alignment:
| Q |
35 |
cagagaatgaagatgacgaatctataaaagaatcgttgtaccttggcatgggagtgggatttgcagtaggtttctgggggatttgtggttctttgtttct |
134 |
Q |
| |
|
|||||||||||||||| |||||||||| ||| |||||||| || ||||||||||| ||||||| ||||||||| |||||||||||||||||||| ||||| |
|
|
| T |
19382251 |
cagagaatgaagatgatgaatctataatagagtcgttgtatctaggcatgggagttggatttggagtaggtttttgggggatttgtggttctttatttct |
19382350 |
T |
|
| Q |
135 |
cattagaaaatggaggcatgcatattttcggttcatatatggagtgggtaacaggctctatgtaactttgatggtaaagttaaatagctttcatagaagt |
234 |
Q |
| |
|
||||| ||||||||||||||||| |||||||| || |||||||| ||| ||| ||||||||| | ||||| |||||||||||||||||||| |||| | |
|
|
| T |
19382351 |
tattaggaaatggaggcatgcatactttcggtttatctatggagtaggtgacaagctctatgttattttgacggtaaagttaaatagctttcgcagaaat |
19382450 |
T |
|
| Q |
235 |
tgagcttttgctagtaaaggttagtgaa |
262 |
Q |
| |
|
|||||| ||| ||| |||||||||||| |
|
|
| T |
19382451 |
tgagctgctgccagttaaggttagtgaa |
19382478 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 35 - 226
Target Start/End: Original strand, 19394507 - 19394698
Alignment:
| Q |
35 |
cagagaatgaagatgacgaatctataaaagaatcgttgtaccttggcatgggagtgggatttgcagtaggtttctgggggatttgtggttctttgtttct |
134 |
Q |
| |
|
|||||||||||||||| || |||||||||||||| ||||| || || |||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19394507 |
cagagaatgaagatgaagactctataaaagaatcattgtatctagggatgggagttggatttgcagtaggtttctgggggatttgtggttctttgtttct |
19394606 |
T |
|
| Q |
135 |
cattagaaaatggaggcatgcatattttcggttcatatatggagtgggtaacaggctctatgtaactttgatggtaaagttaaatagctttc |
226 |
Q |
| |
|
||||| |||||||||||||||| |||||| | ||||||||||| ||| ||| ||||||||| | ||||| |||||||||||||||||||| |
|
|
| T |
19394607 |
tattaggaaatggaggcatgcatgctttcgggttatatatggagtaggtgacaagctctatgttattttgacggtaaagttaaatagctttc |
19394698 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 38 - 226
Target Start/End: Original strand, 18166517 - 18166705
Alignment:
| Q |
38 |
agaatgaagatgacgaatctataaaagaatcgttgtaccttggcatgggagtgggatttgcagtaggtttctgggggatttgtggttctttgtttctcat |
137 |
Q |
| |
|
||||||||||||| || ||||||| ||||| ||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
18166517 |
agaatgaagatgatgactctataagagaatggttgtacctaggcatgggagttggatttgcagtaggtttctgggggatttgtggttctttgtttcttat |
18166616 |
T |
|
| Q |
138 |
tagaaaatggaggcatgcatattttcggttcatatatggagtgggtaacaggctctatgtaactttgatggtaaagttaaatagctttc |
226 |
Q |
| |
|
|||||||||||| |||||||| |||||||| || || |||| ||| ||| ||||||||| ||||||| ||||||||||||||||||| |
|
|
| T |
18166617 |
tagaaaatggagacatgcatactttcggtttattgatagagttggtgacaagctctatgttactttgaacgtaaagttaaatagctttc |
18166705 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 38 - 226
Target Start/End: Complemental strand, 18872517 - 18872329
Alignment:
| Q |
38 |
agaatgaagatgacgaatctataaaagaatcgttgtaccttggcatgggagtgggatttgcagtaggtttctgggggatttgtggttctttgtttctcat |
137 |
Q |
| |
|
||||||||||| | | ||||||| |||||| |||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
18872517 |
agaatgaagattatgcttctataagagaatcaatgtatcttggcatgggagttggatttgcagtaggtttctgggggatttgtggttctttgtttcttat |
18872418 |
T |
|
| Q |
138 |
tagaaaatggaggcatgcatattttcggttcatatatggagtgggtaacaggctctatgtaactttgatggtaaagttaaatagctttc |
226 |
Q |
| |
|
||| ||||||||||||||||| ||| |||| ||||||||||| ||| ||| ||||||||| ||||||||| |||||||||||||||||| |
|
|
| T |
18872417 |
taggaaatggaggcatgcatacttttggtttatatatggagtaggtgacaagctctatgttactttgatgataaagttaaatagctttc |
18872329 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 35 - 262
Target Start/End: Original strand, 19465710 - 19465937
Alignment:
| Q |
35 |
cagagaatgaagatgacgaatctataaaagaatcgttgtaccttggcatgggagtgggatttgcagtaggtttctgggggatttgtggttctttgtttct |
134 |
Q |
| |
|
|||||||||| ||||| ||||| ||||||||||| ||||| || | | |||||| |||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
19465710 |
cagagaatgaggatgatgaatcgataaaagaatcattgtatctaaggacgggagttggatttgcagcaggtttctgggggatttgtggttctttgtttct |
19465809 |
T |
|
| Q |
135 |
cattagaaaatggaggcatgcatattttcggttcatatatggagtgggtaacaggctctatgtaactttgatggtaaagttaaatagctttcatagaagt |
234 |
Q |
| |
|
||||| ||||||||||||||||| |||||||| ||||||||| | ||| ||| ||||||||| ||||||| |||||||||||||||||||| |||| | |
|
|
| T |
19465810 |
tattaggaaatggaggcatgcatactttcggtttatatatggaataggtgacaagctctatgttactttgacggtaaagttaaatagctttcgcagaaat |
19465909 |
T |
|
| Q |
235 |
tgagcttttgctagtaaaggttagtgaa |
262 |
Q |
| |
|
|||||| | | ||| |||||||||||| |
|
|
| T |
19465910 |
tgagctcctaccagttaaggttagtgaa |
19465937 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 16 - 226
Target Start/End: Original strand, 18117295 - 18117505
Alignment:
| Q |
16 |
gaagaaaatcctaaaaatgcagagaatgaagatgacgaatctataaaagaatcgttgtaccttggcatgggagtgggatttgcagtaggtttctggggga |
115 |
Q |
| |
|
|||||||||||| |||| |||||||||||||||| |||||||||| ||| || ||||| || ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18117295 |
gaagaaaatcctggaaatacagagaatgaagatgatgaatctataagagagtcattgtatctaggcatgggagtgggatttgcagtaggtttctggggga |
18117394 |
T |
|
| Q |
116 |
tttgtggttctttgtttctcattagaaaatggaggcatgcatattttcggttcatatatggagtgggtaacaggctctatgtaactttgatggtaaagtt |
215 |
Q |
| |
|
||||||||||| ||||||| ||||| |||||||||||||| || |||||||| | || |||||||| || |||||||| |||||||| |||||||| |
|
|
| T |
18117395 |
tttgtggttctatgtttcttattaggaaatggaggcatgcgtactttcggttagttgatagagtgggtgactatctctatgttactttgatcgtaaagtt |
18117494 |
T |
|
| Q |
216 |
aaatagctttc |
226 |
Q |
| |
|
||||||||||| |
|
|
| T |
18117495 |
aaatagctttc |
18117505 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 38 - 225
Target Start/End: Complemental strand, 17726176 - 17725989
Alignment:
| Q |
38 |
agaatgaagatgacgaatctataaaagaatcgttgtaccttggcatgggagtgggatttgcagtaggtttctgggggatttgtggttctttgtttctcat |
137 |
Q |
| |
|
||||||||||||| || ||||| |||||||| ||||| || || |||||||| |||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
17726176 |
agaatgaagatgatgactctatcaaagaatcattgtatctagggatgggagttggatttgcagtaggtttctgggggatttgtggttctttgtttcttat |
17726077 |
T |
|
| Q |
138 |
tagaaaatggaggcatgcatattttcggttcatatatggagtgggtaacaggctctatgtaactttgatggtaaagttaaatagcttt |
225 |
Q |
| |
|
||||||||||||||||||||| ||| |||| || ||||||| ||| ||| ||||||||| ||||| || |||||||||||||||||| |
|
|
| T |
17726076 |
tagaaaatggaggcatgcatacttttggtttattgatggagtaggtgacaagctctatgttactttaattgtaaagttaaatagcttt |
17725989 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #15
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 38 - 225
Target Start/End: Complemental strand, 19027405 - 19027218
Alignment:
| Q |
38 |
agaatgaagatgacgaatctataaaagaatcgttgtaccttggcatgggagtgggatttgcagtaggtttctgggggatttgtggttctttgtttctcat |
137 |
Q |
| |
|
||||||||||||| || ||||| |||||||| ||||| || || |||||||| |||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
19027405 |
agaatgaagatgatgactctatcaaagaatcattgtatctagggatgggagttggatttgcagtaggtttctgggggatttgtggttctttgtttcttat |
19027306 |
T |
|
| Q |
138 |
tagaaaatggaggcatgcatattttcggttcatatatggagtgggtaacaggctctatgtaactttgatggtaaagttaaatagcttt |
225 |
Q |
| |
|
||||||||||||||||||||| ||| |||| || ||||||| ||| ||| ||||||||| ||||| || |||||||||||||||||| |
|
|
| T |
19027305 |
tagaaaatggaggcatgcatacttttggtttattgatggagtaggtgacaagctctatgttactttaattgtaaagttaaatagcttt |
19027218 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #16
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 16 - 259
Target Start/End: Original strand, 19462519 - 19462762
Alignment:
| Q |
16 |
gaagaaaatcctaaaaatgcagagaatgaagatgacgaatctataaaagaatcgttgtaccttggcatgggagtgggatttgcagtaggtttctggggga |
115 |
Q |
| |
|
|||||||||||| |||| |||||||||||||||| |||||||||| ||| |||||||| | ||||||||||||||||||||||||||||||||||| | |
|
|
| T |
19462519 |
gaagaaaatcctggaaatacagagaatgaagatgatgaatctataagagagtcgttgtatttaggcatgggagtgggatttgcagtaggtttctggggca |
19462618 |
T |
|
| Q |
116 |
tttgtggttctttgtttctcattagaaaatggaggcatgcatattttcggttcatatatggagtgggtaacaggctctatgtaactttgatggtaaagtt |
215 |
Q |
| |
|
||||||||||||||||||| ||| | |||||||||||||| || |||||||| | || |||||||| || |||||||| ||||||| |||||||| |
|
|
| T |
19462619 |
tttgtggttctttgtttcttattcggaaatggaggcatgcgtactttcggttagttgatagagtgggtgactttctctatgttactttgaccgtaaagtt |
19462718 |
T |
|
| Q |
216 |
aaatagctttcatagaagttgagcttttgctagtaaaggttagt |
259 |
Q |
| |
|
||||||||||| |||| |||||| ||||||| ||||||||| |
|
|
| T |
19462719 |
aaatagctttcgcagaaactgagctcctgctagttaaggttagt |
19462762 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #17
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 16 - 226
Target Start/End: Original strand, 19438285 - 19438495
Alignment:
| Q |
16 |
gaagaaaatcctaaaaatgcagagaatgaagatgacgaatctataaaagaatcgttgtaccttggcatgggagtgggatttgcagtaggtttctggggga |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||| ||| |||||||| || ||||||||||| ||||||||||||||||| ||||||| |
|
|
| T |
19438285 |
gaagaaaatcctaaaaatgcagagaatgaagatgatgaatctataagagagtcgttgtatctaggcatgggagttggatttgcagtaggtttttggggga |
19438384 |
T |
|
| Q |
116 |
tttgtggttctttgtttctcattagaaaatggaggcatgcatattttcggttcatatatggagtgggtaacaggctctatgtaactttgatggtaaagtt |
215 |
Q |
| |
|
||||||||||| ||||||| ||||| |||||||||||||| || |||||||| | || |||| || || || ||||| |||||||| |||||||| |
|
|
| T |
19438385 |
tttgtggttctatgtttcttattaggaaatggaggcatgcgtactttcggttagttgatacagtgtgtgactatctttatgttactttgatagtaaagtt |
19438484 |
T |
|
| Q |
216 |
aaatagctttc |
226 |
Q |
| |
|
||||||||||| |
|
|
| T |
19438485 |
aaatagctttc |
19438495 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #18
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 35 - 259
Target Start/End: Original strand, 17943312 - 17943536
Alignment:
| Q |
35 |
cagagaatgaagatgacgaatctataaaagaatcgttgtaccttggcatgggagtgggatttgcagtaggtttctgggggatttgtggttctttgtttct |
134 |
Q |
| |
|
|||||||||||||||| || |||||||||||||| |||||||||||||||| || |||||||||| |||||| |||||||||||||||||||||||| | |
|
|
| T |
17943312 |
cagagaatgaagatgatgactctataaaagaatcactgtaccttggcatgggggttggatttgcagcaggtttttgggggatttgtggttctttgttttt |
17943411 |
T |
|
| Q |
135 |
cattagaaaatggaggcatgcatattttcggttcatatatggagtgggtaacaggctctatgtaactttgatggtaaagttaaatagctttcatagaagt |
234 |
Q |
| |
|
|||||||||||||||||||||| |||||||| || || ||||||| ||| |||||||| |||||||| ||||||||||||||||||| |||| |
|
|
| T |
17943412 |
tattagaaaatggaggcatgcatgctttcggtttattgatagagtgggcgacaaactctatgttactttgatcgtaaagttaaatagctttcgcagaaac |
17943511 |
T |
|
| Q |
235 |
tgagcttttgctagtaaaggttagt |
259 |
Q |
| |
|
|||||| || |||| ||||||||| |
|
|
| T |
17943512 |
tgagctgctgttagttaaggttagt |
17943536 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #19
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 16 - 259
Target Start/End: Original strand, 18104835 - 18105078
Alignment:
| Q |
16 |
gaagaaaatcctaaaaatgcagagaatgaagatgacgaatctataaaagaatcgttgtaccttggcatgggagtgggatttgcagtaggtttctggggga |
115 |
Q |
| |
|
|||||||||||| |||||||||||||||| |||| |||||||||| ||| |||||||| | |||||||||||||||||||||||||| |||| ||||| |
|
|
| T |
18104835 |
gaagaaaatcctggaaatgcagagaatgaaaatgatgaatctataagagagtcgttgtatttaggcatgggagtgggatttgcagtaggattcttgggga |
18104934 |
T |
|
| Q |
116 |
tttgtggttctttgtttctcattagaaaatggaggcatgcatattttcggttcatatatggagtgggtaacaggctctatgtaactttgatggtaaagtt |
215 |
Q |
| |
|
||| |||||| ||||||| ||||| ||||||||||||||||| |||||||| | || |||||||| || |||||||| |||||||| |||||||| |
|
|
| T |
18104935 |
ttttcggttctatgtttcttattaggaaatggaggcatgcatactttcggttagttaatagagtgggtgactatctctatgttactttgatcgtaaagtt |
18105034 |
T |
|
| Q |
216 |
aaatagctttcatagaagttgagcttttgctagtaaaggttagt |
259 |
Q |
| |
|
||||||||||| ||| |||||| ||||||| ||||||||| |
|
|
| T |
18105035 |
aaatagctttcgccgaaactgagctcctgctagttaaggttagt |
18105078 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #20
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 40 - 218
Target Start/End: Original strand, 19355078 - 19355256
Alignment:
| Q |
40 |
aatgaagatgacgaatctataaaagaatcgttgtaccttggcatgggagtgggatttgcagtaggtttctgggggatttgtggttctttgtttctcatta |
139 |
Q |
| |
|
|||||||||||||| ||||| |||||||| ||||| || ||||||||||| ||||||||||||||||||||||||||||| ||||||||||||| |||| |
|
|
| T |
19355078 |
aatgaagatgacgactctatcaaagaatcattgtatctaggcatgggagttggatttgcagtaggtttctgggggatttgccgttctttgtttctaatta |
19355177 |
T |
|
| Q |
140 |
gaaaatggaggcatgcatattttcggttcatatatggagtgggtaacaggctctatgtaactttgatggtaaagttaaa |
218 |
Q |
| |
|
||||||||||||||||||| |||||||| | || ||||| || ||| | ||||||| |||||||| ||||||||||| |
|
|
| T |
19355178 |
gaaaatggaggcatgcatactttcggtttgttgatagagtgcgtgacaagatctatgttactttgatcgtaaagttaaa |
19355256 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #21
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 35 - 215
Target Start/End: Original strand, 19335370 - 19335550
Alignment:
| Q |
35 |
cagagaatgaagatgacgaatctataaaagaatcgttgtaccttggcatgggagtgggatttgcagtaggtttctgggggatttgtggttctttgtttct |
134 |
Q |
| |
|
|||| |||||||||||||| ||| ||| |||||| ||||| || || ||| |||| |||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
19335370 |
cagataatgaagatgacgactctttaagagaatcattgtatctagggatgagagttggatttgcagcaggtttctgggggatttgtggttctttgtttct |
19335469 |
T |
|
| Q |
135 |
cattagaaaatggaggcatgcatattttcggttcatatatggagtgggtaacaggctctatgtaactttgatggtaaagtt |
215 |
Q |
| |
|
|||||||||||||||||||| || |||||||| | ||| |||||||| ||| | ||||||| |||||||| |||||||| |
|
|
| T |
19335470 |
tattagaaaatggaggcatgcttactttcggtttgtttatagagtgggtgacaagatctatgttactttgatcgtaaagtt |
19335550 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #22
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 55 - 218
Target Start/End: Original strand, 25464431 - 25464594
Alignment:
| Q |
55 |
tctataaaagaatcgttgtaccttggcatgggagtgggatttgcagtaggtttctgggggatttgtggttctttgtttctcattagaaaatggaggcatg |
154 |
Q |
| |
|
|||||||||||||| ||||| || ||| ||||||| ||||||||| |||||||||||||||||||||||||||||||| | ||||| ||||||||||||| |
|
|
| T |
25464431 |
tctataaaagaatcattgtatctaggcttgggagttggatttgcaataggtttctgggggatttgtggttctttgttttttattaggaaatggaggcatg |
25464530 |
T |
|
| Q |
155 |
catattttcggttcatatatggagtgggtaacaggctctatgtaactttgatggtaaagttaaa |
218 |
Q |
| |
|
|||| |||||||| || |||||||| || ||| |||||||| |||||||| ||||||||||| |
|
|
| T |
25464531 |
catactttcggtttattaatggagtgagtgacaaactctatgttactttgatcgtaaagttaaa |
25464594 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #23
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 42 - 206
Target Start/End: Complemental strand, 14895025 - 14894861
Alignment:
| Q |
42 |
tgaagatgacgaatctataaaagaatcgttgtaccttggcatgggagtgggatttgcagtaggtttctgggggatttgtggttctttgtttctcattaga |
141 |
Q |
| |
|
|||||| || || ||||||| |||||| |||| |||||||||||| | ||||||||||||||||| |||||||||| ||||||||||||||| |||||| |
|
|
| T |
14895025 |
tgaagacgaggactctataagagaatcaatgtatcttggcatgggaattggatttgcagtaggtttttgggggatttctggttctttgtttcttattaga |
14894926 |
T |
|
| Q |
142 |
aaatggaggcatgcatattttcggttcatatatggagtgggtaacaggctctatgtaactttgat |
206 |
Q |
| |
|
||||||||||||||||| |||||||| || ||||||| ||| ||| ||||||||| |||||||| |
|
|
| T |
14894925 |
aaatggaggcatgcatactttcggtttattgatggagtaggtgacaagctctatgttactttgat |
14894861 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #24
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 59 - 275
Target Start/End: Original strand, 16678589 - 16678805
Alignment:
| Q |
59 |
taaaagaatcgttgtaccttggcatgggagtgggatttgcagtaggtttctgggggatttgtggttctttgtttctcattagaaaatggaggcatgcata |
158 |
Q |
| |
|
|||||||||| ||||| || ||| ||||||| || ||||| |||||||||||||| |||||||||||||||||||| ||||| ||||||||||| |||| |
|
|
| T |
16678589 |
taaaagaatcattgtatctgggcttgggagttggttttgcggtaggtttctggggtatttgtggttctttgtttcttattaggaaatggaggcacacata |
16678688 |
T |
|
| Q |
159 |
ttttcggttcatatatggagtgggtaacaggctctatgtaactttgatggtaaagttaaatagctttcatagaagttgagcttttgctagtaaaggttag |
258 |
Q |
| |
|
| || || || |||||||||| ||| ||| |||||||||||||||||||||||||||| |||||| |||||||||| | | |||| |||||||| |
|
|
| T |
16678689 |
ctatcaatttattgatggagtgggcgacaagctgtatgtaactttgatggtaaagttaaataactttcacagaagttgagttcctaatagtgaaggttag |
16678788 |
T |
|
| Q |
259 |
tgaacctaatttaagtt |
275 |
Q |
| |
|
|| ||||| |||||||| |
|
|
| T |
16678789 |
tggacctattttaagtt |
16678805 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #25
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 52 - 232
Target Start/End: Original strand, 19376994 - 19377174
Alignment:
| Q |
52 |
gaatctataaaagaatcgttgtaccttggcatgggagtgggatttgcagtaggtttctgggggatttgtggttctttgtttctcattagaaaatggaggc |
151 |
Q |
| |
|
||||| |||| |||||| ||||| || ||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| ||||| |||||||||| |
|
|
| T |
19376994 |
gaatccataagagaatcattgtatctaggcatgggagttggatttgcagtaggtttctgggggatttgcggttctttgtttcttattaggaaatggaggc |
19377093 |
T |
|
| Q |
152 |
atgcatattttcggttcatatatggagtgggtaacaggctctatgtaactttgatggtaaagttaaatagctttcatagaa |
232 |
Q |
| |
|
||||||| |||| ||| || || |||| ||| ||| |||||||| |||||||| ||||||||||| || ||||| |||| |
|
|
| T |
19377094 |
atgcatactttcagtttattaatagagtaggtgacaaactctatgttactttgatcgtaaagttaaacaggtttcaaagaa |
19377174 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #26
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 38 - 218
Target Start/End: Original strand, 19426051 - 19426231
Alignment:
| Q |
38 |
agaatgaagatgacgaatctataaaagaatcgttgtaccttggcatgggagtgggatttgcagtaggtttctgggggatttgtggttctttgtttctcat |
137 |
Q |
| |
|
||||||||||||| || ||||| |||||||| ||||| || || |||||||| ||||||||||||||||||||||||||||||||||||||||| || || |
|
|
| T |
19426051 |
agaatgaagatgatgactctatcaaagaatcattgtatctagggatgggagttggatttgcagtaggtttctgggggatttgtggttctttgttccttat |
19426150 |
T |
|
| Q |
138 |
tagaaaatggaggcatgcatattttcggttcatatatggagtgggtaacaggctctatgtaactttgatggtaaagttaaa |
218 |
Q |
| |
|
||||||||||| ||||||||| |||||||| | || ||||| || | | | ||||||| |||||||| ||||||||||| |
|
|
| T |
19426151 |
tagaaaatggaagcatgcatactttcggtttgttgatagagtgcgtgataagatctatgttactttgatcgtaaagttaaa |
19426231 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #27
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 38 - 226
Target Start/End: Original strand, 19415545 - 19415733
Alignment:
| Q |
38 |
agaatgaagatgacgaatctataaaagaatcgttgtaccttggcatgggagtgggatttgcagtaggtttctgggggatttgtggttctttgtttctcat |
137 |
Q |
| |
|
||||||||||| | || ||||| ||||| || ||||| || || ||||||||||||||||||||||||||||||||||||||||||||| | ||||| || |
|
|
| T |
19415545 |
agaatgaagattatgattctatgaaagattcattgtatctaggaatgggagtgggatttgcagtaggtttctgggggatttgtggttctatttttcttat |
19415644 |
T |
|
| Q |
138 |
tagaaaatggaggcatgcatattttcggttcatatatggagtgggtaacaggctctatgtaactttgatggtaaagttaaatagctttc |
226 |
Q |
| |
|
||||||||| ||||||||||| || ||||| || || |||||| || |||||||| |||||| | ||||||||||||||||||| |
|
|
| T |
19415645 |
tagaaaatgcaggcatgcatacttccggtttattgatagagtggccggcaatctctatgttactttggtcgtaaagttaaatagctttc |
19415733 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #28
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 82 - 259
Target Start/End: Complemental strand, 24493375 - 24493200
Alignment:
| Q |
82 |
atgggagtgggatttgcagtaggtttctgggggatttgtggttctttgtttctcattagaaaatggaggcatgcatattttcggttcatatatggagtgg |
181 |
Q |
| |
|
|||||||| || |||| ||||||||| ||| ||| |||||| |||| ||||| ||||| ||||||||||| || || | ||||| || ||||||||| |
|
|
| T |
24493375 |
atgggagttgggtttggagtaggtttttggttgatgtgtggtcctttatttcttattaggaaatggaggcacgcgtactaccggtttatcgatggagtgg |
24493276 |
T |
|
| Q |
182 |
gtaacaggctctatgtaactttgatggtaaagttaaatagctttcatagaagttgagcttttgctagtaaaggttagt |
259 |
Q |
| |
|
|| ||||| ||||||||||||||||||| ||||| |||||||||| |||| |||| | ||||||| ||||||||| |
|
|
| T |
24493275 |
gtgacaggatctatgtaactttgatggtgaagtt--atagctttcacagaaaatgagttcctgctagttaaggttagt |
24493200 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 79 - 147
Target Start/End: Complemental strand, 24496818 - 24496750
Alignment:
| Q |
79 |
ggcatgggagtgggatttgcagtaggtttctgggggatttgtggttctttgtttctcattagaaaatgg |
147 |
Q |
| |
|
||||||||||| ||||||| | ||||||||||| ||| |||||| ||||||||| ||||| |||||| |
|
|
| T |
24496818 |
ggcatgggagttggatttggaataggtttctggttgatctgtggtcctttgtttcgtattaggaaatgg |
24496750 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 121; Significance: 5e-62; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 35 - 275
Target Start/End: Original strand, 8460924 - 8461164
Alignment:
| Q |
35 |
cagagaatgaagatgacgaatctataaaagaatcgttgtaccttggcatgggagtgggatttgcagtaggtttctgggggatttgtggttctttgtttct |
134 |
Q |
| |
|
|||||||||||||||| || ||||||| |||||| ||||| |||||||||||||| ||||||||||| ||||| |||||||||||||||||||||||||| |
|
|
| T |
8460924 |
cagagaatgaagatgatgactctataagagaatcattgtatcttggcatgggagttggatttgcagtgggtttttgggggatttgtggttctttgtttct |
8461023 |
T |
|
| Q |
135 |
cattagaaaatggaggcatgcatattttcggttcatatatggagtgggtaacaggctctatgtaactttgatggtaaagttaaatagctttcatagaagt |
234 |
Q |
| |
|
||||| ||||||||||||||||| | ||| || || ||||| ||||| ||| |||||||| || ||||||||||||||||| ||| |||| |||| | |
|
|
| T |
8461024 |
tattaggaaatggaggcatgcatactatcgatttattgatggaatgggtgacaagctctatggaattttgatggtaaagttaattagatttcgcagaaat |
8461123 |
T |
|
| Q |
235 |
tgagcttttgctagtaaaggttagtgaacctaatttaagtt |
275 |
Q |
| |
|
|||||| |||||| ||||||||||||||||| |||||||| |
|
|
| T |
8461124 |
tgagctcctgctagcaaaggttagtgaacctactttaagtt |
8461164 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 105; Significance: 2e-52; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 38 - 226
Target Start/End: Complemental strand, 13665587 - 13665399
Alignment:
| Q |
38 |
agaatgaagatgacgaatctataaaagaatcgttgtaccttggcatgggagtgggatttgcagtaggtttctgggggatttgtggttctttgtttctcat |
137 |
Q |
| |
|
|||||||||||||||| |||||||||||||| ||| ||||||||||||| || |||||||||| ||||||||||||||| ||||||||||||||||| || |
|
|
| T |
13665587 |
agaatgaagatgacgactctataaaagaatcattgaaccttggcatgggggttggatttgcagcaggtttctgggggatatgtggttctttgtttcttat |
13665488 |
T |
|
| Q |
138 |
tagaaaatggaggcatgcatattttcggttcatatatggagtgggtaacaggctctatgtaactttgatggtaaagttaaatagctttc |
226 |
Q |
| |
|
|||||||||||||||||||| |||||||| | || ||||||| ||| |||||| | |||||||||||||||||||||||||||| |
|
|
| T |
13665487 |
tagaaaatggaggcatgcatgctttcggttttttgatagagtgggcgacaatctctatattactttgatggtaaagttaaatagctttc |
13665399 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 104; Significance: 7e-52; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 43 - 266
Target Start/End: Complemental strand, 2709207 - 2708984
Alignment:
| Q |
43 |
gaagatgacgaatctataaaagaatcgttgtaccttggcatgggagtgggatttgcagtaggtttctgggggatttgtggttctttgtttctcattagaa |
142 |
Q |
| |
|
||||| ||||||||||||| |||||| ||||| || ||||||||||| ||||||||||||||||| ||||||||||||||| |||||||||| ||||| | |
|
|
| T |
2709207 |
gaagacgacgaatctataagagaatcattgtatctaggcatgggagttggatttgcagtaggtttttgggggatttgtggtcctttgtttcttattagga |
2709108 |
T |
|
| Q |
143 |
aatggaggcatgcatattttcggttcatatatggagtgggtaacaggctctatgtaactttgatggtaaagttaaatagctttcatagaagttgagcttt |
242 |
Q |
| |
|
|||||||| | |||| | |||||| || ||||||| ||| ||| ||||||||||||||||||| |||||||||| | ||||||||||| | |||||| |
|
|
| T |
2709107 |
aatggaggaacacatactatcggtttattgatggagtaggtgacaagctctatgtaactttgatgataaagttaaacaactttcatagaaatcgagcttc |
2709008 |
T |
|
| Q |
243 |
tgctagtaaaggttagtgaaccta |
266 |
Q |
| |
|
| | ||| |||||||||||||||| |
|
|
| T |
2709007 |
tacaagttaaggttagtgaaccta |
2708984 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 35 - 260
Target Start/End: Original strand, 15536891 - 15537116
Alignment:
| Q |
35 |
cagagaatgaagatgacgaatctataaaagaatcgttgtaccttggcatgggagtgggatttgcagtaggtttctgggggatttgtggttctttgtttct |
134 |
Q |
| |
|
|||||||||||||||| || |||| |||||||| ||||| || || |||||||| |||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
15536891 |
cagagaatgaagatgatgactctaacaaagaatcattgtatctagggatgggagttggatttgcggtaggtttctgggggatttgtggttctttgtttct |
15536990 |
T |
|
| Q |
135 |
cattagaaaatggaggcatgcatattttcggttcatatatggagtgggtaacaggctctatgtaactttgatggtaaagttaaatagctttcatagaagt |
234 |
Q |
| |
|
||||||||||||||||||||||| |||||||| | || ||| ||| ||| | ||||||| |||||||| ||||||||||| | ||||| |||| | |
|
|
| T |
15536991 |
tattagaaaatggaggcatgcatactttcggtttactgataaagtaggtgacaagatctatgttactttgatcgtaaagttaaacatgtttcacagaaat |
15537090 |
T |
|
| Q |
235 |
tgagcttttgctagtaaaggttagtg |
260 |
Q |
| |
|
|||||| ||||||| ||||| |||| |
|
|
| T |
15537091 |
tgagctcctgctagttaaggtcagtg |
15537116 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0274 (Bit Score: 92; Significance: 1e-44; HSPs: 2)
Name: scaffold0274
Description:
Target: scaffold0274; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 35 - 218
Target Start/End: Original strand, 21944 - 22127
Alignment:
| Q |
35 |
cagagaatgaagatgacgaatctataaaagaatcgttgtaccttggcatgggagtgggatttgcagtaggtttctgggggatttgtggttctttgtttct |
134 |
Q |
| |
|
|||||||||||||||| || ||| |||||| || ||||| ||||||||||| || ||||||||||| |||||||||||||||| ||||||||||||||| |
|
|
| T |
21944 |
cagagaatgaagatgatgactctgcaaaagagtcattgtatcttggcatgggggttggatttgcagttggtttctgggggatttttggttctttgtttct |
22043 |
T |
|
| Q |
135 |
cattagaaaatggaggcatgcatattttcggttcatatatggagtgggtaacaggctctatgtaactttgatggtaaagttaaa |
218 |
Q |
| |
|
||||| |||||||||||||||||| | |||||| || || |||||||| ||| ||||||||| |||| ||| ||||||||||| |
|
|
| T |
22044 |
cattacaaaatggaggcatgcatactatcggtttattgatagagtgggtgacaagctctatgttacttcgattgtaaagttaaa |
22127 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0274; HSP #2
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 35 - 218
Target Start/End: Complemental strand, 2212 - 2029
Alignment:
| Q |
35 |
cagagaatgaagatgacgaatctataaaagaatcgttgtaccttggcatgggagtgggatttgcagtaggtttctgggggatttgtggttctttgtttct |
134 |
Q |
| |
|
|||||||||||||||| || ||| |||||| || ||||| ||||||||||| | ||||||||||| |||||||||||||||| |||||||||||||| |
|
|
| T |
2212 |
cagagaatgaagatgatgactctgcaaaagagtcattgtatcttggcatggggattggatttgcagttggtttctgggggattttcggttctttgtttct |
2113 |
T |
|
| Q |
135 |
cattagaaaatggaggcatgcatattttcggttcatatatggagtgggtaacaggctctatgtaactttgatggtaaagttaaa |
218 |
Q |
| |
|
||||| |||||||||||||||||| | |||||| || || |||||||| ||| ||||||||| |||| ||| ||||||||||| |
|
|
| T |
2112 |
cattacaaaatggaggcatgcatactatcggtttattgatagagtgggtgacaagctctatgttacttcgattgtaaagttaaa |
2029 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0648 (Bit Score: 85; Significance: 2e-40; HSPs: 1)
Name: scaffold0648
Description:
Target: scaffold0648; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 35 - 218
Target Start/End: Complemental strand, 2742 - 2558
Alignment:
| Q |
35 |
cagagaatgaagatgacgaatctataaaagaatcgttgtaccttggcatgggagtgggatttgcagtaggtttctggggg-atttgtggttctttgtttc |
133 |
Q |
| |
|
|||||||||||||||| || ||| |||||| || ||||| ||||||||||| || ||||||||||| |||||||||||| |||| |||||||||||||| |
|
|
| T |
2742 |
cagagaatgaagatgatgactctgcaaaagagtcattgtatcttggcatgggggttggatttgcagttggtttctgggggtatttttggttctttgtttc |
2643 |
T |
|
| Q |
134 |
tcattagaaaatggaggcatgcatattttcggttcatatatggagtgggtaacaggctctatgtaactttgatggtaaagttaaa |
218 |
Q |
| |
|
|||||| |||||||||||||||||| | |||||| || || |||||||| ||| ||||||||| |||| ||| ||||||||||| |
|
|
| T |
2642 |
tcattacaaaatggaggcatgcatactatcggtttattgatagagtgggtgacaagctctatgttacttcgattgtaaagttaaa |
2558 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0640 (Bit Score: 84; Significance: 6e-40; HSPs: 1)
Name: scaffold0640
Description:
Target: scaffold0640; HSP #1
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 35 - 218
Target Start/End: Original strand, 6761 - 6944
Alignment:
| Q |
35 |
cagagaatgaagatgacgaatctataaaagaatcgttgtaccttggcatgggagtgggatttgcagtaggtttctgggggatttgtggttctttgtttct |
134 |
Q |
| |
|
|||||||||||||||| || ||| |||||| || ||||| ||||||||||| | ||||||||||| |||||||||||||||| |||||||||||||| |
|
|
| T |
6761 |
cagagaatgaagatgatgactctgcaaaagagtcattgtatcttggcatggggattggatttgcagttggtttctgggggattttcggttctttgtttct |
6860 |
T |
|
| Q |
135 |
cattagaaaatggaggcatgcatattttcggttcatatatggagtgggtaacaggctctatgtaactttgatggtaaagttaaa |
218 |
Q |
| |
|
||||| |||||||||||||||||| | |||||| || || |||||||| ||| ||||||||| |||| ||| ||||||||||| |
|
|
| T |
6861 |
cattacaaaatggaggcatgcatactatcggtttattgatagagtgggtgacaagctctatgttacttcgattgtaaagttaaa |
6944 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0271 (Bit Score: 84; Significance: 6e-40; HSPs: 1)
Name: scaffold0271
Description:
Target: scaffold0271; HSP #1
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 35 - 218
Target Start/End: Original strand, 11859 - 12042
Alignment:
| Q |
35 |
cagagaatgaagatgacgaatctataaaagaatcgttgtaccttggcatgggagtgggatttgcagtaggtttctgggggatttgtggttctttgtttct |
134 |
Q |
| |
|
|||||||||||||||| || ||| |||||| || ||||| ||||||||||| | ||||||||||| |||||||||||||||| |||||||||||||| |
|
|
| T |
11859 |
cagagaatgaagatgatgactctgcaaaagagtcattgtatcttggcatggggattggatttgcagttggtttctgggggattttcggttctttgtttct |
11958 |
T |
|
| Q |
135 |
cattagaaaatggaggcatgcatattttcggttcatatatggagtgggtaacaggctctatgtaactttgatggtaaagttaaa |
218 |
Q |
| |
|
||||| |||||||||||||||||| | |||||| || || |||||||| ||| ||||||||| |||| ||| ||||||||||| |
|
|
| T |
11959 |
cattacaaaatggaggcatgcatactatcggtttattgatagagtgggtgacaagctctatgttacttcgattgtaaagttaaa |
12042 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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