View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8175_low_52 (Length: 303)
Name: NF8175_low_52
Description: NF8175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8175_low_52 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 276; Significance: 1e-154; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 12 - 303
Target Start/End: Original strand, 34951280 - 34951571
Alignment:
| Q |
12 |
aacctgtggaaggtccaagacagtgtacttcaactctggaaacgcctcacaaataatcttagctgtgtttccagttccaccaccaacatcaaccaatgaa |
111 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34951280 |
aacctgtggaaggtccaagacagtgtacttcagctctggaaacgcctcacaaataatcttagctgtgtttccagttccaccaccaacatcaaccaatgaa |
34951379 |
T |
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| Q |
112 |
ccaatcccttcaaaaacagacttacaatctctcaaggccaacctcacaacatgagaatcactttccatagcatcattaaaactcttcaagtatgcagaat |
211 |
Q |
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|||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34951380 |
ccaatcccttcaaaaacagaattacaatctctcaaagccaacctcacaacatgagaatcactttccatagcatcattaaaactcttcaagtatgcagaat |
34951479 |
T |
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| Q |
212 |
tttcatgaataaaatcccaataactttctgggcctaatgcagtctcaacaattgtgagatcctctccacaagtccatttccctaaatgattg |
303 |
Q |
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| T |
34951480 |
tttcatgaataaaatcccaataactttctgggcctaatgcggtctcaacaattgtgagatcctctccacaagtccatttccctaaatgattg |
34951571 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 12 - 303
Target Start/End: Original strand, 34946809 - 34947100
Alignment:
| Q |
12 |
aacctgtggaaggtccaagacagtgtacttcaactctggaaacgcctcacaaataatcttagctgtgtttccagttccaccaccaacatcaaccaatgaa |
111 |
Q |
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||||||||||||||||| |||| ||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34946809 |
aacctgtggaaggtccaggacaatgtacttcagctctggaaacgcctcacatataatcttagctgtgtttccagttccaccaccaacatcaaccaatgaa |
34946908 |
T |
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| Q |
112 |
ccaatcccttcaaaaacagacttacaatctctcaaggccaacctcacaacatgagaatcactttccatagcatcattaaaactcttcaagtatgcagaat |
211 |
Q |
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| T |
34946909 |
ccaatcccttgaaaaacagacttacaatctctcaaggccaacctcacaacatgagaatcactttccatagcatcattaaaagtcttcaagtatgaagaat |
34947008 |
T |
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| Q |
212 |
tttcatgaataaaatcccaataactttctgggcctaatgcagtctcaacaattgtgagatcctctccacaagtccatttccctaaatgattg |
303 |
Q |
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||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34947009 |
tttgatgaataaaatcccaataactttcagggcctaatgcagtctcaacaattgtgagatcctctccacaagtccatttccctaaatgattg |
34947100 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 52; Significance: 8e-21; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 49 - 188
Target Start/End: Original strand, 8074748 - 8074887
Alignment:
| Q |
49 |
ggaaacgcctcacaaataatcttagctgtgtttccagttccaccaccaacatcaaccaatgaaccaatcccttcaaaaacagacttacaatctctcaagg |
148 |
Q |
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|||||||||||||||||||| ||| | |||||||| |||||||| |||||||||||||| ||| | || |||||||| || || ||||| |||| | |
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| T |
8074748 |
ggaaacgcctcacaaataattttaacagtgtttccggttccacctccaacatcaaccaacgaagttaagccctcaaaaactgatttgcaatcactcattg |
8074847 |
T |
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| Q |
149 |
ccaacctcacaacatgagaatcactttccatagcatcatt |
188 |
Q |
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| T |
8074848 |
caaacctcaccatattagaatcactttccatagcatcatt |
8074887 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 49 - 188
Target Start/End: Original strand, 8066313 - 8066452
Alignment:
| Q |
49 |
ggaaacgcctcacaaataatcttagctgtgtttccagttccaccaccaacatcaaccaatgaaccaatcccttcaaaaacagacttacaatctctcaagg |
148 |
Q |
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| T |
8066313 |
ggaaacgcctcagaaataattttaaccgtgtttccggttccacctccaacatcaaccaaagaagttatgccctcaaaaactgatttgcaatcactcattg |
8066412 |
T |
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| Q |
149 |
ccaacctcacaacatgagaatcactttccatagcatcatt |
188 |
Q |
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| T |
8066413 |
caaacctcatcatattagagtcactctccatagcatcatt |
8066452 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 40 - 125
Target Start/End: Complemental strand, 34343663 - 34343578
Alignment:
| Q |
40 |
ttcaactctggaaacgcctcacaaataatcttagctgtgtttccagttccaccaccaacatcaaccaatgaaccaatcccttcaaa |
125 |
Q |
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||||||| ||||| |||||||| ||||| |||||||| |||||||||||||||||||||| || | ||| ||||||||||||| |
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| T |
34343663 |
ttcaacttaggaaaagcctcacatataattctagctgtggttccagttccaccaccaacatccacaatagaatcaatcccttcaaa |
34343578 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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