View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8175_low_55 (Length: 290)
Name: NF8175_low_55
Description: NF8175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8175_low_55 |
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Alignment Details
Target: chr5 (Bit Score: 263; Significance: 1e-147; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 263; E-Value: 1e-147
Query Start/End: Original strand, 1 - 275
Target Start/End: Original strand, 37195600 - 37195874
Alignment:
| Q |
1 |
acaatgaaaccaatcaaattcagattatcatttttattcatgttactagcctctaaatccttcatagcagaatcaaaatgtagcaaaacttgtgacatag |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||| |
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| T |
37195600 |
acaatgaaaccaatcaaattcagattatcatttttattcatgttactagcctctaaatccttcatagcagaatcaaaatgtagcaaaacttgtaatatag |
37195699 |
T |
|
| Q |
101 |
ctttagcttcctattatctacaagatgatacaaatctcacatatgtttcaaacatcatgcaatcaaaccttgttacaaaaccagaagatattgttagtta |
200 |
Q |
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| T |
37195700 |
cgttagcttcctattatctacaagatgatacaaatctcacatatgtttcaaacatcatgcaatcaaaccttgttacaaaaccagaagatattgttagtta |
37195799 |
T |
|
| Q |
201 |
caacacagacacaataacaaacaaagattttgtccaatcttttacaagagtgaatgttccattcccttgtgattg |
275 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37195800 |
caacacagacacaataacaaacaaagattttgtccaatcttttacaagagtgaatgttccattcccttgtgattg |
37195874 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 16 - 275
Target Start/End: Original strand, 37221094 - 37221350
Alignment:
| Q |
16 |
aaattcagattatcatttttattcatgttactagcctctaaatccttcatagcagaatcaaaatgtagcaaaacttgtgacatagctttagcttcctatt |
115 |
Q |
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||||||||||||||| |||||||| ||||||| | || ||||| ||| ||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
37221094 |
aaattcagattatcacttttattcttgttacttgtcttgcaatccatcacttcagaatcaaaatgtagcaaaacttgtgacttagctttagcttcctatt |
37221193 |
T |
|
| Q |
116 |
atctacaagatgatacaaatctcacatatgtttcaaacatcatgcaatcaaaccttgttacaaaaccagaagatattgttagttacaacacagacacaat |
215 |
Q |
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| T |
37221194 |
atataaggccaggtacaaccttggcaaatatttcaaaggtcatgcaatccaatgttgtttcaaaagaagaagatattctcagctacaacacag---caat |
37221290 |
T |
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| Q |
216 |
aacaaacaaagattttgtccaatcttttacaagagtgaatgttccattcccttgtgattg |
275 |
Q |
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||||||| |||| | ||||||| |||||||||||||||||| |||||||||||||| |
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| T |
37221291 |
tacaaacatagatgctatccaatccgatacaagagtgaatgttcccttcccttgtgattg |
37221350 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 117
Target Start/End: Original strand, 37226546 - 37226665
Alignment:
| Q |
1 |
acaatgaaaccaatca---aattcagattatcatttttattcatgttactagcctctaaatccttcatagcagaatcaaaatgtagcaaaacttgtgaca |
97 |
Q |
| |
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|||||||||||||||| |||||||||||||| |||||||| ||||||| | ||| ||||| ||| ||||||||||||||| ||||||||||||| |
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| T |
37226546 |
acaatgaaaccaatcatcaaattcagattatcacttttattcttgttacttgtctcgcaatccatcacttcagaatcaaaatgtaacaaaacttgtgact |
37226645 |
T |
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| Q |
98 |
tagctttagcttcctattat |
117 |
Q |
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|||||||||||||||||||| |
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| T |
37226646 |
tagctttagcttcctattat |
37226665 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 67 - 275
Target Start/End: Complemental strand, 37387319 - 37387111
Alignment:
| Q |
67 |
gcagaatcaaaatgtagcaaaacttgtgacatagctttagcttcctattatctacaagatgatacaaatctcacatatgtttcaaacatcatgcaatcaa |
166 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||| ||||||||| || || | |||||| | |||||| ||||||||||||||||||| | |
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| T |
37387319 |
gcagaatcaaaatgtagcaaaacttgtgacttagctttagcatcctattatatatgggaaggtacaaacttgacatatatttcaaacatcatgcaatcca |
37387220 |
T |
|
| Q |
167 |
accttgttacaaaaccagaagatattgttagttacaacacagacacaataacaaacaaagattttgtccaatcttttacaagagtgaatgttccattccc |
266 |
Q |
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| ||||| ||||||| ||||||| | || ||||| || || || || ||||| |||| | ||| | || | ||||| |||||||||||||||| |
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| T |
37387219 |
atgttgtttcaaaacctctagatattttcagctacaatactgatactctaccaaacctagatatgctccgtttttcttcaagactgaatgttccattccc |
37387120 |
T |
|
| Q |
267 |
ttgtgattg |
275 |
Q |
| |
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||||||||| |
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| T |
37387119 |
ttgtgattg |
37387111 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 246 - 275
Target Start/End: Original strand, 37440376 - 37440405
Alignment:
| Q |
246 |
aagagtgaatgttccattcccttgtgattg |
275 |
Q |
| |
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|||||||||||||||||||||||||||||| |
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| T |
37440376 |
aagagtgaatgttccattcccttgtgattg |
37440405 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 243 - 275
Target Start/End: Original strand, 37226791 - 37226823
Alignment:
| Q |
243 |
tacaagagtgaatgttccattcccttgtgattg |
275 |
Q |
| |
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||||||| ||||||||||||||||||||||||| |
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| T |
37226791 |
tacaagattgaatgttccattcccttgtgattg |
37226823 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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