View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8175_low_56 (Length: 280)
Name: NF8175_low_56
Description: NF8175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8175_low_56 |
 | |
|
| [»] scaffold0097 (1 HSPs) |
| | |
|
| [»] scaffold1910 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 217; Significance: 1e-119; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 8 - 259
Target Start/End: Original strand, 25975959 - 25976208
Alignment:
| Q |
8 |
tggtgttgagaaattcaggcgtgtggatgtcgtccactgcgtcactgcctaggtttttatgataaggtgtatcataactcaaataaattttttcctcacc |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25975959 |
tggtgttgagaaattcaggcgtgtggatgtcgtccactgcgtcaccgcctaggtttttatgataaggtgtatcataactcaaataaattttttcctcacc |
25976058 |
T |
|
| Q |
108 |
aggaatcaagtttaacacataatcattaacctgatcaacaattgtattctttggtaccaatattgctctactttgaaaatattctgctttaccaatgttt |
207 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||| | |
|
|
| T |
25976059 |
aggaatcaagtctaacacataatcattaacctgatcaacaattgtattctttggtgccaatattgctctgctttgaaaatattctgctttaccaatgtgt |
25976158 |
T |
|
| Q |
208 |
cctaacaaatttgggtaaaagtgctttcaacaatagatgcaataggattacc |
259 |
Q |
| |
|
|||||||||||||||| ||||||||| |||||||||||||||||||||||| |
|
|
| T |
25976159 |
cctaacaaatttgggt--aagtgctttgaacaatagatgcaataggattacc |
25976208 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 8 - 259
Target Start/End: Original strand, 25971519 - 25971768
Alignment:
| Q |
8 |
tggtgttgagaaattcaggcgtgtggatgtcgtccactgcgtcactgcctaggtttttatgataaggtgtatcataactcaaataaattttttcctcacc |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25971519 |
tggtgttgagaaattcaggcgtgtggatgtcgtccactgcgtcaccgcctaggtttttatgataaggtgtatcataactcaaataaattttttcctcacc |
25971618 |
T |
|
| Q |
108 |
aggaatcaagtttaacacataatcattaacctgatcaacaattgtattctttggtaccaatattgctctactttgaaaatattctgctttaccaatgttt |
207 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||| | |
|
|
| T |
25971619 |
aggaatcaagtctaacacataatcattaacctgatcaacaattgtattctttggtgccaatattgctctgctttgaaaatattctgctttaccaatgtgt |
25971718 |
T |
|
| Q |
208 |
cctaacaaatttgggtaaaagtgctttcaacaatagatgcaataggattacc |
259 |
Q |
| |
|
||||||||||||| || ||||||||| |||||||||||||||||||||||| |
|
|
| T |
25971719 |
cctaacaaatttgtgt--aagtgctttgaacaatagatgcaataggattacc |
25971768 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 8 - 161
Target Start/End: Complemental strand, 2280565 - 2280412
Alignment:
| Q |
8 |
tggtgttgagaaattcaggcgtgtggatgtcgtccactgcgtcactgcctaggtttttatgataaggtgtatcataactcaaataaattttttcctcacc |
107 |
Q |
| |
|
|||||||||| |||||||| ||||||||||| || |||||||||| ||| ||||||||||||||||||||| ||||||||||| |||||||| ||||| |
|
|
| T |
2280565 |
tggtgttgaggaattcaggagtgtggatgtcatctactgcgtcaccatctatgtttttatgataaggtgtatcgtaactcaaatatattttttcttcacc |
2280466 |
T |
|
| Q |
108 |
aggaatcaagtttaacacataatcattaacctgatcaacaattgtattctttgg |
161 |
Q |
| |
|
||||||||||| ||||||||||||||||||||| |||||||| ||||||||||| |
|
|
| T |
2280465 |
aggaatcaagtctaacacataatcattaacctgttcaacaatggtattctttgg |
2280412 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 213; Significance: 1e-117; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 8 - 259
Target Start/End: Complemental strand, 18255866 - 18255617
Alignment:
| Q |
8 |
tggtgttgagaaattcaggcgtgtggatgtcgtccactgcgtcactgcctaggtttttatgataaggtgtatcataactcaaataaattttttcctcacc |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
18255866 |
tggtgttgagaaattcaggcgtgtggatgtcgtccactgcgtcaccgcctaggtttttatgataagatgtatcataactcaaataaattttttcctcacc |
18255767 |
T |
|
| Q |
108 |
aggaatcaagtttaacacataatcattaacctgatcaacaattgtattctttggtaccaatattgctctactttgaaaatattctgctttaccaatgttt |
207 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||| | |
|
|
| T |
18255766 |
aggaatcaagtctaacacataatcattaacctgatcaacaattgtattctttggtgccaatattgctctgctttgaaaatattctgctttaccaatgtgt |
18255667 |
T |
|
| Q |
208 |
cctaacaaatttgggtaaaagtgctttcaacaatagatgcaataggattacc |
259 |
Q |
| |
|
|||||||||||||||| ||||||||| |||||||||||||||||||||||| |
|
|
| T |
18255666 |
cctaacaaatttgggt--aagtgctttgaacaatagatgcaataggattacc |
18255617 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 8 - 259
Target Start/End: Original strand, 38656402 - 38656651
Alignment:
| Q |
8 |
tggtgttgagaaattcaggcgtgtggatgtcgtccactgcgtcactgcctaggtttttatgataaggtgtatcataactcaaataaattttttcctcacc |
107 |
Q |
| |
|
|||||||||| |||||||| ||||||||||| || || ||||||| ||| ||||||||||||||||||||| ||||||||||| |||||||| ||||| |
|
|
| T |
38656402 |
tggtgttgaggaattcaggagtgtggatgtcatctacggcgtcaccatctatgtttttatgataaggtgtatcgtaactcaaatagattttttcttcacc |
38656501 |
T |
|
| Q |
108 |
aggaatcaagtttaacacataatcattaacctgatcaacaattgtattctttggtaccaatattgctctactttgaaaatattctgctttaccaatgttt |
207 |
Q |
| |
|
|||||||||||| |||||||||||||||||||| |||||||| ||||||||||| ||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
38656502 |
aggaatcaagttgaacacataatcattaacctgttcaacaatggtattctttggcgccaatattgctctactttgaaaatattttgctttaccaatgttt |
38656601 |
T |
|
| Q |
208 |
cctaacaaatttgggtaaaagtgctttcaacaatagatgcaataggattacc |
259 |
Q |
| |
|
|||||||||||||||| ||||||| ||||| |||||||||| ||||||||| |
|
|
| T |
38656602 |
cctaacaaatttgggt--aagtgctatcaacgatagatgcaacaggattacc |
38656651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 8 - 259
Target Start/End: Original strand, 52419273 - 52419520
Alignment:
| Q |
8 |
tggtgttgagaaattcaggcgtgtggatgtcgtccactgcgtcactgcctaggtttttatgataaggtgtatcataactcaaataaattttttcctcacc |
107 |
Q |
| |
|
|||||||||| |||||||| ||||||||||| || | |||||||| ||| ||||||||||||||||||||| ||||||||||| |||||||| ||||| |
|
|
| T |
52419273 |
tggtgttgaggaattcaggagtgtggatgtcatctaatgcgtcaccatctatgtttttatgataaggtgtatcgtaactcaaatagattttttcttcacc |
52419372 |
T |
|
| Q |
108 |
aggaatcaagtttaacacataatcattaacctgatcaacaattgtattctttggtaccaatattgctctactttgaaaatattctgctttaccaatgttt |
207 |
Q |
| |
|
||||||||||| |||||||||||||||||| || |||||||| |||||||||||| |||||||||||||||||||||||||| ||||| ||||||||| |
|
|
| T |
52419373 |
aggaatcaagtctaacacataatcattaacgtgttcaacaatggtattctttggtgtcaatattgctctactttgaaaatattatgctt--ccaatgttt |
52419470 |
T |
|
| Q |
208 |
cctaacaaatttgggtaaaagtgctttcaacaatagatgcaataggattacc |
259 |
Q |
| |
|
|||||||||||||||| ||||||| |||| |||||||||||| ||||||| |
|
|
| T |
52419471 |
cctaacaaatttgggt--aagtgctgtcaatgatagatgcaataagattacc |
52419520 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 8 - 161
Target Start/End: Complemental strand, 31486857 - 31486704
Alignment:
| Q |
8 |
tggtgttgagaaattcaggcgtgtggatgtcgtccactgcgtcactgcctaggtttttatgataaggtgtatcataactcaaataaattttttcctcacc |
107 |
Q |
| |
|
|||||||||| |||||||| ||||||||||| || |||||||||| ||| ||||||||||||||||||||| ||||| ||||| |||||||| ||||| |
|
|
| T |
31486857 |
tggtgttgaggaattcaggagtgtggatgtcatctactgcgtcaccatctatgtttttatgataaggtgtatcgtaacttaaatagattttttcttcacc |
31486758 |
T |
|
| Q |
108 |
aggaatcaagtttaacacataatcattaacctgatcaacaattgtattctttgg |
161 |
Q |
| |
|
| ||||||||| ||||||||||||||||||||| ||||| || ||||||||||| |
|
|
| T |
31486757 |
atgaatcaagtctaacacataatcattaacctgttcaacgatggtattctttgg |
31486704 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 213; Significance: 1e-117; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 8 - 259
Target Start/End: Original strand, 37892014 - 37892263
Alignment:
| Q |
8 |
tggtgttgagaaattcaggcgtgtggatgtcgtccactgcgtcactgcctaggtttttatgataaggtgtatcataactcaaataaattttttcctcacc |
107 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37892014 |
tggtgttgagaaattcaggggtgtggatgtcgtccactgcgtcaccgcctaggtttttatgataaggtgtatcataactcaaataaattttttcctcacc |
37892113 |
T |
|
| Q |
108 |
aggaatcaagtttaacacataatcattaacctgatcaacaattgtattctttggtaccaatattgctctactttgaaaatattctgctttaccaatgttt |
207 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||| | |
|
|
| T |
37892114 |
aggaatcaagtctaacacataatcattaacctgatcaacaattgtattctttggtgccaatattgctctgctttgaaaatattctgctttaccaatgtgt |
37892213 |
T |
|
| Q |
208 |
cctaacaaatttgggtaaaagtgctttcaacaatagatgcaataggattacc |
259 |
Q |
| |
|
|||||||||||||||| ||||||||| |||||||||||||||||||||||| |
|
|
| T |
37892214 |
cctaacaaatttgggt--aagtgctttgaacaatagatgcaataggattacc |
37892263 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 8 - 259
Target Start/End: Original strand, 23089754 - 23090004
Alignment:
| Q |
8 |
tggtgttgagaaattcaggcgtgtggatgtcgtccactgcgtcactgcctaggtttttatgataaggtgtatcataactcaaa-taaattttttcctcac |
106 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||| ||||||| | | ||||||||| |||| |||||||||||||||||| ||| |||||||||||| |
|
|
| T |
23089754 |
tggtgtagagaaattcaggcgtgtggatgtcgtccaccgcgtcaccgtccaggtttttacgatatggtgtatcataactcaaaataatttttttcctcac |
23089853 |
T |
|
| Q |
107 |
caggaatcaagtttaacacataatcattaacctgatcaacaattgtattctttggtaccaatattgctctactttgaaaatattctgctttaccaatgtt |
206 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23089854 |
caggaatcaagtctaacacataatcattaacctgatcaacaattgtattctttggtgccaatattgctctactttgaaaatattctgctttaccaatgtt |
23089953 |
T |
|
| Q |
207 |
tcctaacaaatttgggtaaaagtgctttcaacaatagatgcaataggattacc |
259 |
Q |
| |
|
||||||||||||||| | |||||||||||||||||||||||||||||||||| |
|
|
| T |
23089954 |
tcctaacaaatttggtt--aagtgctttcaacaatagatgcaataggattacc |
23090004 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 8 - 253
Target Start/End: Complemental strand, 29245074 - 29244831
Alignment:
| Q |
8 |
tggtgttgagaaattcaggcgtgtggatgtcgtccactgcgtcactgcctaggtttttatgataaggtgtatcataactcaaataaattttttcctcacc |
107 |
Q |
| |
|
|||||||||| |||||||| ||||||||||| || |||||||||| ||| ||||||||||||||||||||| ||||||||||| |||||||| ||||| |
|
|
| T |
29245074 |
tggtgttgaggaattcaggagtgtggatgtcatctactgcgtcaccatctatgtttttatgataaggtgtatcgtaactcaaatagattttttcttcacc |
29244975 |
T |
|
| Q |
108 |
aggaatcaagtttaacacataatcattaacctgatcaacaattgtattctttggtaccaatattgctctactttgaaaatattctgctttaccaatgttt |
207 |
Q |
| |
|
||||||||||| |||||||||||||||||| || |||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29244974 |
aggaatcaagtctaacacataatcattaacgtgttcaacaataatattctttggttccaatattgctctactttgaaaatattctgctttaccaatgttt |
29244875 |
T |
|
| Q |
208 |
cctaacaaatttgggtaaaagtgctttcaacaatagatgcaatagg |
253 |
Q |
| |
|
|||||||||||||||| ||||| | ||||| |||||||||||||| |
|
|
| T |
29244874 |
cctaacaaatttgggt--aagtgttgtcaacgatagatgcaatagg |
29244831 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 8 - 161
Target Start/End: Complemental strand, 48650638 - 48650485
Alignment:
| Q |
8 |
tggtgttgagaaattcaggcgtgtggatgtcgtccactgcgtcactgcctaggtttttatgataaggtgtatcataactcaaataaattttttcctcacc |
107 |
Q |
| |
|
|||||||||| |||||||| ||||||||||| || |||||||||| ||| ||||||||||||||||||||| ||||||||||| |||||||| ||||| |
|
|
| T |
48650638 |
tggtgttgaggaattcaggagtgtggatgtcatctactgcgtcaccatctatgtttttatgataaggtgtatcgtaactcaaatatattttttcttcacc |
48650539 |
T |
|
| Q |
108 |
aggaatcaagtttaacacataatcattaacctgatcaacaattgtattctttgg |
161 |
Q |
| |
|
||||||||||| ||||||||||||||||||||| |||||||| ||||||||||| |
|
|
| T |
48650538 |
aggaatcaagtctaacacataatcattaacctgttcaacaatggtattctttgg |
48650485 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 142 - 207
Target Start/End: Original strand, 13926900 - 13926965
Alignment:
| Q |
142 |
tcaacaattgtattctttggtaccaatattgctctactttgaaaatattctgctttaccaatgttt |
207 |
Q |
| |
|
|||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13926900 |
tcaacaatggtattctttggtgccaatattgctctactttgaaaatattctgctttaccaatgttt |
13926965 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 8 - 112
Target Start/End: Original strand, 13926777 - 13926881
Alignment:
| Q |
8 |
tggtgttgagaaattcaggcgtgtggatgtcgtccactgcgtcactgcctaggtttttatgataaggtgtatcataactcaaataaattttttcctcacc |
107 |
Q |
| |
|
|||||||||| |||||||| ||||||||||| || |||||||||| ||| ||||||||||||||||||||| ||||||||||| || ||||| ||||| |
|
|
| T |
13926777 |
tggtgttgaggaattcaggagtgtggatgtcatctactgcgtcaccatctatgtttttatgataaggtgtatcgtaactcaaatagatattttcttcacc |
13926876 |
T |
|
| Q |
108 |
aggaa |
112 |
Q |
| |
|
||||| |
|
|
| T |
13926877 |
aggaa |
13926881 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 205; Significance: 1e-112; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 8 - 259
Target Start/End: Original strand, 36896131 - 36896380
Alignment:
| Q |
8 |
tggtgttgagaaattcaggcgtgtggatgtcgtccactgcgtcactgcctaggtttttatgataaggtgtatcataactcaaataaattttttcctcacc |
107 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||| | ||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36896131 |
tggtgttgagaaattcaggcgtgtggatatcgtccactgcgtcaccgtctaggtttttacgataaggtgtatcataactcaaataaattttttcctcacc |
36896230 |
T |
|
| Q |
108 |
aggaatcaagtttaacacataatcattaacctgatcaacaattgtattctttggtaccaatattgctctactttgaaaatattctgctttaccaatgttt |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| |||||||||||| |||||||||||||||| |
|
|
| T |
36896231 |
aggaatcaagtttaacacataatcattaacctgatcagcaattgtattctttggtgccaatattgctctattttgaaaatattatgctttaccaatgttt |
36896330 |
T |
|
| Q |
208 |
cctaacaaatttgggtaaaagtgctttcaacaatagatgcaataggattacc |
259 |
Q |
| |
|
| |||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
36896331 |
cataacaaatttgggt--aagtgctttcaacaatagatgcaataggattacc |
36896380 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 9 - 259
Target Start/End: Original strand, 29359683 - 29359931
Alignment:
| Q |
9 |
ggtgttgagaaattcaggcgtgtggatgtcgtccactgcgtcactgcctaggtttttatgataaggtgtatcataactcaaataaattttttcctcacca |
108 |
Q |
| |
|
||||||||| |||||||| ||||||||||| || || |||||| ||| ||||||||||||||||||||| ||||||||||| |||||||| |||||| |
|
|
| T |
29359683 |
ggtgttgaggaattcaggagtgtggatgtcatctacaacgtcaccatctatgtttttatgataaggtgtatcgtaactcaaatagattttttcttcacca |
29359782 |
T |
|
| Q |
109 |
ggaatcaagtttaacacataatcattaacctgatcaacaattgtattctttggtaccaatattgctctactttgaaaatattctgctttaccaatgtttc |
208 |
Q |
| |
|
|||||||||| ||||||||||||||||||||| |||||||| | ||||||||| ||||||||||| ||||||||||||||||| ||||||||||||||| |
|
|
| T |
29359783 |
ggaatcaagtctaacacataatcattaacctgttcaacaatggcattctttggcgccaatattgctttactttgaaaatattctactttaccaatgtttc |
29359882 |
T |
|
| Q |
209 |
ctaacaaatttgggtaaaagtgctttcaacaatagatgcaataggattacc |
259 |
Q |
| |
|
||||||||||||||| ||||||| ||||| |||||||||||||||||||| |
|
|
| T |
29359883 |
ctaacaaatttgggt--aagtgctatcaacgatagatgcaataggattacc |
29359931 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 8 - 161
Target Start/End: Complemental strand, 16908685 - 16908532
Alignment:
| Q |
8 |
tggtgttgagaaattcaggcgtgtggatgtcgtccactgcgtcactgcctaggtttttatgataaggtgtatcataactcaaataaattttttcctcacc |
107 |
Q |
| |
|
|||||||||| |||||||| ||||||||||| || |||||||||| ||| ||||||||||||||||||||| ||||||||||| |||||||| ||||| |
|
|
| T |
16908685 |
tggtgttgaggaattcaggagtgtggatgtcatctactgcgtcaccatctatgtttttatgataaggtgtatcgtaactcaaatatattttttcttcacc |
16908586 |
T |
|
| Q |
108 |
aggaatcaagtttaacacataatcattaacctgatcaacaattgtattctttgg |
161 |
Q |
| |
|
||||||||||| ||||||||||||||||||||| |||||||| ||||||||||| |
|
|
| T |
16908585 |
aggaatcaagtctaacacataatcattaacctgttcaacaatggtattctttgg |
16908532 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 8 - 161
Target Start/End: Complemental strand, 21382270 - 21382117
Alignment:
| Q |
8 |
tggtgttgagaaattcaggcgtgtggatgtcgtccactgcgtcactgcctaggtttttatgataaggtgtatcataactcaaataaattttttcctcacc |
107 |
Q |
| |
|
|||||||||| |||||||| ||||||||||| || |||||||||| ||| ||||||||||||||||||||| ||||| ||||| |||||||| ||||| |
|
|
| T |
21382270 |
tggtgttgaggaattcaggagtgtggatgtcatctactgcgtcaccatctatgtttttatgataaggtgtatcgtaacttaaatagattttttcttcacc |
21382171 |
T |
|
| Q |
108 |
aggaatcaagtttaacacataatcattaacctgatcaacaattgtattctttgg |
161 |
Q |
| |
|
| ||||||||| ||||||||||||||||||||| |||||||| ||||||||||| |
|
|
| T |
21382170 |
atgaatcaagtctaacacataatcattaacctgttcaacaatggtattctttgg |
21382117 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 8 - 161
Target Start/End: Complemental strand, 28389023 - 28388871
Alignment:
| Q |
8 |
tggtgttgagaaattcaggcgtgtggatgtcgtccactgcgtcactgcctaggtttttatgataaggtgtatcataactcaaataaattttttcctcacc |
107 |
Q |
| |
|
|||||||||| |||||||| |||| |||||| || |||||||||| ||| ||||||||||||||||||||| ||||||||||| |||||| | ||||| |
|
|
| T |
28389023 |
tggtgttgaggaattcaggagtgtagatgtcatctactgcgtcaccatctatgtttttatgataaggtgtatcgtaactcaaatatattttt-cttcacc |
28388925 |
T |
|
| Q |
108 |
aggaatcaagtttaacacataatcattaacctgatcaacaattgtattctttgg |
161 |
Q |
| |
|
||||||||||| ||||||||||||||||||||| |||||||| ||||||||||| |
|
|
| T |
28388924 |
aggaatcaagtctaacacataatcattaacctgttcaacaatggtattctttgg |
28388871 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 185; Significance: 1e-100; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 8 - 259
Target Start/End: Original strand, 38095990 - 38096239
Alignment:
| Q |
8 |
tggtgttgagaaattcaggcgtgtggatgtcgtccactgcgtcactgcctaggtttttatgataaggtgtatcataactcaaataaattttttcctcacc |
107 |
Q |
| |
|
||||||||||||||||| || |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| | | |
|
|
| T |
38095990 |
tggtgttgagaaattcaagcatgtggatgtcgtccactgcgtcaccgcctaggtttttatgataaggtgtatcataactcaaataaattttttccttatc |
38096089 |
T |
|
| Q |
108 |
aggaatcaagtttaacacataatcattaacctgatcaacaattgtattctttggtaccaatattgctctactttgaaaatattctgctttaccaatgttt |
207 |
Q |
| |
|
|||| |||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||| | |
|
|
| T |
38096090 |
aggagtcaagtccaacacataatcattaacctgatcaacaattgtattctttggtgccaatattgctctgctttgaaaatattctgctttaccaatgtgt |
38096189 |
T |
|
| Q |
208 |
cctaacaaatttgggtaaaagtgctttcaacaatagatgcaataggattacc |
259 |
Q |
| |
|
| ||||||||||| || ||||||||| |||||||||||||||||||||||| |
|
|
| T |
38096190 |
cataacaaatttgagt--aagtgctttgaacaatagatgcaataggattacc |
38096239 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 8 - 75
Target Start/End: Complemental strand, 37609585 - 37609518
Alignment:
| Q |
8 |
tggtgttgagaaattcaggcgtgtggatgtcgtccactgcgtcactgcctaggtttttatgataaggt |
75 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||| | ||||||||| | |||||||| |
|
|
| T |
37609585 |
tggtgttgagaaattcaggcgtgtggatgtcgttcactgcgtcaccgtctaggttttcacgataaggt |
37609518 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 161; Significance: 6e-86; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 8 - 259
Target Start/End: Original strand, 4997971 - 4998220
Alignment:
| Q |
8 |
tggtgttgagaaattcaggcgtgtggatgtcgtccactgcgtcactgcctaggtttttatgataaggtgtatcataactcaaataaattttttcctcacc |
107 |
Q |
| |
|
|||||||||| |||||||| ||||||||||| || || ||||||| ||| ||||||||||||||||||||| ||||||||||| |||||||| ||||| |
|
|
| T |
4997971 |
tggtgttgaggaattcaggagtgtggatgtcatctacggcgtcaccatctatgtttttatgataaggtgtatcgtaactcaaatagattttttcttcacc |
4998070 |
T |
|
| Q |
108 |
aggaatcaagtttaacacataatcattaacctgatcaacaattgtattctttggtaccaatattgctctactttgaaaatattctgctttaccaatgttt |
207 |
Q |
| |
|
||||||||||| ||||||||||||||||||||| |||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4998071 |
aggaatcaagtctaacacataatcattaacctgttcaacaatggtattctttggcgccaatattgctctactttgaaaatattctgctttaccaatgttt |
4998170 |
T |
|
| Q |
208 |
cctaacaaatttgggtaaaagtgctttcaacaatagatgcaataggattacc |
259 |
Q |
| |
|
|||||||||||||||| ||||||| ||||| ||| |||||||||||||||| |
|
|
| T |
4998171 |
cctaacaaatttgggt--aagtgctatcaacgatatatgcaataggattacc |
4998220 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 8 - 259
Target Start/End: Original strand, 5014047 - 5014296
Alignment:
| Q |
8 |
tggtgttgagaaattcaggcgtgtggatgtcgtccactgcgtcactgcctaggtttttatgataaggtgtatcataactcaaataaattttttcctcacc |
107 |
Q |
| |
|
|||||||||| |||||||| ||||||||||| || || ||||||| ||| ||||||||||||||||||||| ||||||||||| |||||||| ||||| |
|
|
| T |
5014047 |
tggtgttgaggaattcaggagtgtggatgtcatctacggcgtcaccatctatgtttttatgataaggtgtatcgtaactcaaatagattttttcttcacc |
5014146 |
T |
|
| Q |
108 |
aggaatcaagtttaacacataatcattaacctgatcaacaattgtattctttggtaccaatattgctctactttgaaaatattctgctttaccaatgttt |
207 |
Q |
| |
|
||||||||||| ||||||||||||||||||||| |||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5014147 |
aggaatcaagtctaacacataatcattaacctgttcaacaatggtattctttggcgccaatattgctctactttgaaaatattctgctttaccaatgttt |
5014246 |
T |
|
| Q |
208 |
cctaacaaatttgggtaaaagtgctttcaacaatagatgcaataggattacc |
259 |
Q |
| |
|
|||||||||||||||| ||||||| ||||| ||| |||||||||||||||| |
|
|
| T |
5014247 |
cctaacaaatttgggt--aagtgctatcaacgatatatgcaataggattacc |
5014296 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 8 - 259
Target Start/End: Complemental strand, 1512393 - 1512144
Alignment:
| Q |
8 |
tggtgttgagaaattcaggcgtgtggatgtcgtccactgcgtcactgcctaggtttttatgataaggtgtatcataactcaaataaattttttcctcacc |
107 |
Q |
| |
|
|||||||||| |||||||| || |||||||| || || ||||||| ||| ||||||||||||||||||||| ||||||||||| |||||||| ||||| |
|
|
| T |
1512393 |
tggtgttgaggaattcaggagtatggatgtcatctacggcgtcaccatctatgtttttatgataaggtgtatcgtaactcaaatagattttttcttcacc |
1512294 |
T |
|
| Q |
108 |
aggaatcaagtttaacacataatcattaacctgatcaacaattgtattctttggtaccaatattgctctactttgaaaatattctgctttaccaatgttt |
207 |
Q |
| |
|
|||||||||||| |||||||||||||||||||| |||||||| ||||||||||| ||||||||||||||||||||||||||| | ||||||| |||||| |
|
|
| T |
1512293 |
aggaatcaagttgaacacataatcattaacctgttcaacaatggtattctttggcgccaatattgctctactttgaaaatattttactttaccgatgttt |
1512194 |
T |
|
| Q |
208 |
cctaacaaatttgggtaaaagtgctttcaacaatagatgcaataggattacc |
259 |
Q |
| |
|
|||||||||||||||| ||||||| ||||| |||||||||| ||||||||| |
|
|
| T |
1512193 |
cctaacaaatttgggt--aagtgctatcaacgatagatgcaacaggattacc |
1512144 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 100; Significance: 2e-49; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 8 - 171
Target Start/End: Complemental strand, 26168463 - 26168300
Alignment:
| Q |
8 |
tggtgttgagaaattcaggcgtgtggatgtcgtccactgcgtcactgcctaggtttttatgataaggtgtatcataactcaaataaattttttcctcacc |
107 |
Q |
| |
|
|||||||||| |||||||| ||||||||||| || || ||||||| ||| ||||||||||||||||||||||||||||||||| |||||||| ||||| |
|
|
| T |
26168463 |
tggtgttgaggaattcaggagtgtggatgtcatctacggcgtcaccatctatgtttttatgataaggtgtatcataactcaaatagattttttcttcacc |
26168364 |
T |
|
| Q |
108 |
aggaatcaagtttaacacataatcattaacctgatcaacaattgtattctttggtaccaatatt |
171 |
Q |
| |
|
|||||||||||| |||||||||||||||||||| |||||||| ||||||||||| |||||||| |
|
|
| T |
26168363 |
aggaatcaagttgaacacataatcattaacctgttcaacaatggtattctttggcgccaatatt |
26168300 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 8 - 161
Target Start/End: Complemental strand, 45115449 - 45115295
Alignment:
| Q |
8 |
tggtgttgagaaattcaggcgtgtggatgtcgtccactgcgtcactgcctaggtttttatgataaggtgtatcataactcaaata-aattttttcctcac |
106 |
Q |
| |
|
|||||||||| |||||| | ||||||||||| || |||||||||| ||| ||||||||||||||||||||| ||||||||||| | ||||||| |||| |
|
|
| T |
45115449 |
tggtgttgaggaattcaagagtgtggatgtcatctactgcgtcaccatctatgtttttatgataaggtgtatcgtaactcaaatatatttttttcttcac |
45115350 |
T |
|
| Q |
107 |
caggaatcaagtttaacacataatcattaacctgatcaacaattgtattctttgg |
161 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||| ||||| || ||||||||||| |
|
|
| T |
45115349 |
caggaatcaagtctaacacataatcattaacctgttcaacgatggtattctttgg |
45115295 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 192 - 259
Target Start/End: Complemental strand, 26168298 - 26168233
Alignment:
| Q |
192 |
tgctttaccaatgtttcctaacaaatttgggtaaaagtgctttcaacaatagatgcaataggattacc |
259 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||| ||||| |||||||||| ||||||||| |
|
|
| T |
26168298 |
tgctttaccaatgtttcctaacaaatttgggt--aagtgctatcaacgatagatgcaacaggattacc |
26168233 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 98; Significance: 3e-48; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 8 - 161
Target Start/End: Complemental strand, 23827388 - 23827235
Alignment:
| Q |
8 |
tggtgttgagaaattcaggcgtgtggatgtcgtccactgcgtcactgcctaggtttttatgataaggtgtatcataactcaaataaattttttcctcacc |
107 |
Q |
| |
|
|||||||||| |||||||| ||||||||||| || |||||||||| ||| ||||||||||||||||||||| ||||||||||| |||||||| ||||| |
|
|
| T |
23827388 |
tggtgttgaggaattcaggagtgtggatgtcatctactgcgtcaccatctatgtttttatgataaggtgtatcgtaactcaaatatattttttcttcacc |
23827289 |
T |
|
| Q |
108 |
aggaatcaagtttaacacataatcattaacctgatcaacaattgtattctttgg |
161 |
Q |
| |
|
||||||||||| ||||||||||||||||||||| |||||||| ||||||||||| |
|
|
| T |
23827288 |
aggaatcaagtctaacacataatcattaacctgttcaacaatggtattctttgg |
23827235 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 8 - 161
Target Start/End: Complemental strand, 19961248 - 19961094
Alignment:
| Q |
8 |
tggtgttgagaaattcaggcgtgtggatgtcgtccactgcgtcactgcctaggtttttatgataaggtgtatcataactcaaata-aattttttcctcac |
106 |
Q |
| |
|
|||||||||| |||||||| ||||||||||| || |||||||||| ||| ||||||||||||||||||||| ||||||||||| | ||||||| |||| |
|
|
| T |
19961248 |
tggtgttgaggaattcaggagtgtggatgtcatctactgcgtcaccatctatgtttttatgataaggtgtatcgtaactcaaatatatttttttcttcac |
19961149 |
T |
|
| Q |
107 |
caggaatcaagtttaacacataatcattaacctgatcaacaattgtattctttgg |
161 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||| |||| ||| ||||||||||| |
|
|
| T |
19961148 |
caggaatcaagtctaacacataatcattaacctgttcaataatggtattctttgg |
19961094 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0097 (Bit Score: 94; Significance: 6e-46; HSPs: 1)
Name: scaffold0097
Description:
Target: scaffold0097; HSP #1
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 8 - 161
Target Start/End: Original strand, 52396 - 52549
Alignment:
| Q |
8 |
tggtgttgagaaattcaggcgtgtggatgtcgtccactgcgtcactgcctaggtttttatgataaggtgtatcataactcaaataaattttttcctcacc |
107 |
Q |
| |
|
|||||||||| |||||| | ||||||||||| || |||||||||| ||| ||||||||||||||||||||| ||||||||||| |||||||| ||||| |
|
|
| T |
52396 |
tggtgttgaggaattcaagagtgtggatgtcatctactgcgtcaccatctatgtttttatgataaggtgtatcgtaactcaaatagattttttcttcacc |
52495 |
T |
|
| Q |
108 |
aggaatcaagtttaacacataatcattaacctgatcaacaattgtattctttgg |
161 |
Q |
| |
|
||||||||||| ||||||||||||||||||||| |||||||| ||||||||||| |
|
|
| T |
52496 |
aggaatcaagtctaacacataatcattaacctgttcaacaatggtattctttgg |
52549 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1910 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold1910
Description:
Target: scaffold1910; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 8 - 54
Target Start/End: Original strand, 1125 - 1171
Alignment:
| Q |
8 |
tggtgttgagaaattcaggcgtgtggatgtcgtccactgcgtcactg |
54 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
1125 |
tggtgttgagaaattcaggcgtgtggatatcgtccactgcgtcactg |
1171 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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