View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8175_low_58 (Length: 274)

Name: NF8175_low_58
Description: NF8175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8175_low_58
NF8175_low_58
[»] chr5 (10 HSPs)
chr5 (1-260)||(28864822-28865081)
chr5 (8-148)||(23773032-23773170)
chr5 (160-237)||(28590029-28590106)
chr5 (158-237)||(40612376-40612455)
chr5 (160-237)||(4593181-4593258)
chr5 (184-242)||(19185976-19186034)
chr5 (160-237)||(2464996-2465073)
chr5 (181-237)||(545784-545840)
chr5 (181-237)||(8074777-8074833)
chr5 (200-260)||(23773302-23773362)
[»] chr4 (7 HSPs)
chr4 (7-254)||(24753102-24753347)
chr4 (16-246)||(24745611-24745839)
chr4 (157-260)||(21622817-21622917)
chr4 (136-236)||(21622192-21622292)
chr4 (167-256)||(2786579-2786668)
chr4 (189-243)||(42278752-42278806)
chr4 (164-236)||(19051081-19051153)
[»] chr8 (15 HSPs)
chr8 (7-256)||(28062975-28063222)
chr8 (7-256)||(28005672-28005919)
chr8 (7-254)||(36033020-36033257)
chr8 (7-254)||(31074345-31074584)
chr8 (24-257)||(28525105-28525338)
chr8 (7-148)||(9626021-9626160)
chr8 (144-256)||(28526250-28526364)
chr8 (138-249)||(31074984-31075095)
chr8 (134-256)||(12637429-12637551)
chr8 (178-256)||(28006313-28006391)
chr8 (178-256)||(28063616-28063694)
chr8 (184-237)||(32898188-32898241)
chr8 (181-236)||(35177721-35177776)
chr8 (182-242)||(30134857-30134917)
chr8 (156-219)||(5965137-5965200)
[»] chr7 (10 HSPs)
chr7 (5-173)||(330561-330727)
chr7 (134-250)||(24287781-24287897)
chr7 (156-237)||(33607232-33607313)
chr7 (181-236)||(30924757-30924812)
chr7 (138-219)||(330090-330171)
chr7 (181-234)||(7259433-7259486)
chr7 (181-236)||(10894671-10894726)
chr7 (185-256)||(25621458-25621529)
chr7 (189-242)||(48646370-48646423)
chr7 (181-237)||(48787610-48787666)
[»] chr1 (10 HSPs)
chr1 (7-256)||(11059949-11060194)
chr1 (7-219)||(1408013-1408226)
chr1 (7-222)||(44719729-44719941)
chr1 (144-256)||(11060463-11060575)
chr1 (144-254)||(44720549-44720659)
chr1 (150-216)||(8975528-8975594)
chr1 (182-234)||(7944489-7944541)
chr1 (144-260)||(50106866-50106981)
chr1 (189-236)||(7945323-7945370)
chr1 (189-242)||(9340789-9340842)
[»] chr2 (16 HSPs)
chr2 (21-193)||(26585884-26586054)
chr2 (62-255)||(18675433-18675624)
chr2 (110-254)||(38854170-38854316)
chr2 (150-260)||(34582338-34582448)
chr2 (7-77)||(14886860-14886930)
chr2 (156-219)||(12004541-12004604)
chr2 (152-252)||(15440837-15440937)
chr2 (134-217)||(12010560-12010643)
chr2 (110-236)||(38855869-38855996)
chr2 (181-237)||(32765264-32765320)
chr2 (156-198)||(12011028-12011070)
chr2 (160-237)||(2910427-2910504)
chr2 (189-236)||(32766029-32766076)
chr2 (178-219)||(12011076-12011117)
chr2 (134-222)||(12004085-12004173)
chr2 (181-237)||(24458387-24458443)
[»] chr3 (6 HSPs)
chr3 (134-197)||(29188112-29188175)
chr3 (156-219)||(40206394-40206457)
chr3 (181-237)||(17701668-17701724)
chr3 (181-237)||(36279271-36279327)
chr3 (182-236)||(52318066-52318120)
chr3 (182-219)||(55388406-55388443)
[»] chr6 (2 HSPs)
chr6 (8-86)||(33986966-33987044)
chr6 (133-216)||(19599348-19599431)


Alignment Details
Target: chr5 (Bit Score: 256; Significance: 1e-142; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 1 - 260
Target Start/End: Original strand, 28864822 - 28865081
Alignment:
Q  1 aagaacgaattcaagatatacaaatacataatttgggaaaatgcgattcataaccagacctgaaagcctaaaacaattcttcatatattgctagaattga 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  28864822 aagaacgaattcaagatatacaaatacataatttgggaaaatgcgattcataatcagacctgaaagcctaaaacaattcttcatatattgctagaattga 28864921  T
Q  101 taaattgatataaaaaaggatcatagtaggtctactttgtgcttgtaactgtttattgtcagggaccttagtgacaataagtgtttactgtcagggacgt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28864922 taaattgatataaaaaaggatcatagtaggtctactttgtgcttgtaactgtttattgtcagggaccttagtgacaataagtgtttactgtcagggacgt 28865021  T
Q  201 aactgatggtaagtatgcatagacagagacctaacagcaagtctcccgcaaccacaaaac 260  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28865022 aactgatggtaagtatgcatagacagagacctaacagcaagtctcccgcaaccacaaaac 28865081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 8 - 148
Target Start/End: Original strand, 23773032 - 23773170
Alignment:
Q  8 aattcaagatatacaaatacataatttgggaaaatgcgattcataaccagacctgaaagcctaaaacaattcttcatatattgctagaattgataaattg 107  Q
    ||||||||||||||||||||| ||||| | |||||| ||||||||||||||||  ||| ||||||| ||||||||||||  |||||||||||||||||||    
T  23773032 aattcaagatatacaaatacagaatttagaaaaatgtgattcataaccagaccacaaaacctaaaataattcttcatat--tgctagaattgataaattg 23773129  T
Q  108 atataaaaaaggatcatagtaggtctactttgtgcttgtaa 148  Q
    |||||| | |||||||||||||  |||||||||||||||||    
T  23773130 atataagataggatcatagtagacctactttgtgcttgtaa 23773170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 160 - 237
Target Start/End: Complemental strand, 28590106 - 28590029
Alignment:
Q  160 cagggaccttagtgacaataagtgtttactgtcagggacgtaactgatggtaagtatgcatagacagagacctaacag 237  Q
    ||||||| ||||||| | |  |||||||||||||||||| |||||||| ||||||||||| || ||||||||||||||    
T  28590106 cagggactttagtgaaattttgtgtttactgtcagggacctaactgatagtaagtatgcacagtcagagacctaacag 28590029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 158 - 237
Target Start/End: Original strand, 40612376 - 40612455
Alignment:
Q  158 gtcagggaccttagtgacaataagtgtttactgtcagggacgtaactgatggtaagtatgcatagacagagacctaacag 237  Q
    ||||||||| ||||||| | |  |||||||||||||||||| |||||||| ||||||||||| || ||| ||||||||||    
T  40612376 gtcagggactttagtgaaatttcgtgtttactgtcagggacctaactgatagtaagtatgcacagtcagggacctaacag 40612455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 160 - 237
Target Start/End: Complemental strand, 4593258 - 4593181
Alignment:
Q  160 cagggaccttagtgacaataagtgtttactgtcagggacgtaactgatggtaagtatgcatagacagagacctaacag 237  Q
    ||||||| ||||||| | |  |||||||||||||||||| |||||||| ||||||||||| || ||| ||||||||||    
T  4593258 cagggactttagtgaaatttcgtgtttactgtcagggacctaactgatagtaagtatgcacagtcagggacctaacag 4593181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 184 - 242
Target Start/End: Original strand, 19185976 - 19186034
Alignment:
Q  184 tttactgtcagggacgtaactgatggtaagtatgcatagacagagacctaacagcaagt 242  Q
    ||||||||||||||| |||||||  |||||||| || || |||||||||||||| ||||    
T  19185976 tttactgtcagggacctaactgacagtaagtatacaaagtcagagacctaacagtaagt 19186034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 160 - 237
Target Start/End: Complemental strand, 2465073 - 2464996
Alignment:
Q  160 cagggaccttagtgacaataagtgtttactgtcagggacgtaactgatggtaagtatgcatagacagagacctaacag 237  Q
    ||||||| ||||||| | |  |||||||||||||| ||| |||||||| |||| |||||| || ||| ||||||||||    
T  2465073 cagggactttagtgaaatttcgtgtttactgtcagtgacctaactgatagtaaatatgcacagtcagggacctaacag 2464996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 181 - 237
Target Start/End: Original strand, 545784 - 545840
Alignment:
Q  181 gtgtttactgtcagggacgtaactgatggtaagtatgcatagacagagacctaacag 237  Q
    ||||||||| |||||| | |||||||| ||||||||||| || ||| ||||||||||    
T  545784 gtgtttactatcaggggcctaactgatagtaagtatgcacagtcagggacctaacag 545840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 181 - 237
Target Start/End: Complemental strand, 8074833 - 8074777
Alignment:
Q  181 gtgtttactgtcagggacgtaactgatggtaagtatgcatagacagagacctaacag 237  Q
    |||||||||||||||||| ||||| || ||||||||||| || ||| || |||||||    
T  8074833 gtgtttactgtcagggacctaacttatagtaagtatgcacagtcagggagctaacag 8074777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 200 - 260
Target Start/End: Original strand, 23773302 - 23773362
Alignment:
Q  200 taactgatggtaagtatgcatagacagagacctaacagcaagtctcccgcaaccacaaaac 260  Q
    ||||| || ||||||||||| || ||| |||||||||  |||| |||||||||||||||||    
T  23773302 taactaatagtaagtatgcacagtcagggacctaacaataagtatcccgcaaccacaaaac 23773362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 133; Significance: 3e-69; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 7 - 254
Target Start/End: Original strand, 24753102 - 24753347
Alignment:
Q  7 gaattcaagatatacaaatacataatttgggaaaatgcgattcataaccagacctgaaagcctaaaacaattcttcatatattgctagaattgataaatt 106  Q
    |||||||||||| ||||||||| ||||||| |||||| |||||||||| |||||| |||||  |||||||||||||||||  |||||||| |||||||||    
T  24753102 gaattcaagataaacaaatacagaatttggaaaaatgtgattcataactagacctcaaagctcaaaacaattcttcatat--tgctagaaatgataaatt 24753199  T
Q  107 gatataaaaaaggatcatagtaggtctactttgtgcttgtaactgtttattgtcagggaccttagtgacaataagtgtttactgtcagggacgtaactga 206  Q
    ||| | |||||||||||||||||||||||||||||| ||||| |||||| |||||| ||||||||||||| ||||||||||||||||||||| |||||||    
T  24753200 gatttgaaaaaggatcatagtaggtctactttgtgcctgtaagtgtttaatgtcagagaccttagtgacagtaagtgtttactgtcagggacctaactga 24753299  T
Q  207 tggtaagtatgcatagacagagacctaacagcaagtctcccgcaacca 254  Q
    | |||| |||||| || ||| ||||| |||  |||||||| |||||||    
T  24753300 tagtaattatgcacagtcagggacctcacaaaaagtctccagcaacca 24753347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 16 - 246
Target Start/End: Original strand, 24745611 - 24745839
Alignment:
Q  16 atatacaaatacataatttgggaaaatgcgattcataaccagacctgaaagcctaaaacaattcttcatatattgctagaattgataaattgatataaaa 115  Q
    ||||||||||||| ||||||| |||||| |||||||||| |||||| ||||||| | ||||||||||||||  |||||||||||||||||||||||||||    
T  24745611 atatacaaatacagaatttggaaaaatgtgattcataactagaccttaaagcctgagacaattcttcatat--tgctagaattgataaattgatataaaa 24745708  T
Q  116 aaggatcatagtaggtctactttgtgcttgtaactgtttattgtcagggaccttagtgacaataagtgtttactgtcagggacgtaactgatggtaagta 215  Q
    |||||||||||||||  |||||||||| ||||| ||| || ||| |||||||||||||||| ||||||||||||||||||||| |||||||| |||| ||    
T  24745709 aaggatcatagtaggcatactttgtgcctgtaagtgtctactgttagggaccttagtgacagtaagtgtttactgtcagggacctaactgatagtaatta 24745808  T
Q  216 tgcatagacagagacctaacagcaagtctcc 246  Q
    | || || ||| ||||||||||||| |||||    
T  24745809 tacacagtcagggacctaacagcaaatctcc 24745839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 157 - 260
Target Start/End: Original strand, 21622817 - 21622917
Alignment:
Q  157 tgtcagggaccttagtgacaataagtgtttactgtcagggacgtaactgatggtaagtatgcatagacagagacctaacagcaagtctcccgcaaccaca 256  Q
    |||||||||||||||||||||||| | |||||||||| |||| |||||||| ||||||||||| |  ||  |||||||   ||||||||| |||||||||    
T  21622817 tgtcagggaccttagtgacaataattttttactgtcatggacctaactgatagtaagtatgcacaatcatggacctaa---caagtctcctgcaaccaca 21622913  T
Q  257 aaac 260  Q
    ||||    
T  21622914 aaac 21622917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 136 - 236
Target Start/End: Complemental strand, 21622292 - 21622192
Alignment:
Q  136 tttgtgcttgtaactgtttattgtcagggaccttagtgacaataagtgtttactgtcagggacgtaactgatggtaagtatgcatagacagagacctaac 235  Q
    |||||| |||||| |||||| |||||  ||||||||||||  |||||||||| ||| || ||| |||||||| ||||||||||| || ||||||||||||    
T  21622292 tttgtgtttgtaagtgtttactgtcaaagaccttagtgactgtaagtgtttattgttagagacctaactgatagtaagtatgcacagtcagagacctaac 21622193  T
Q  236 a 236  Q
    |    
T  21622192 a 21622192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 167 - 256
Target Start/End: Complemental strand, 2786668 - 2786579
Alignment:
Q  167 cttagtgacaataagtgtttactgtcagggacgtaactgatggtaagtatgcatagacagagacctaacagcaagtctcccgcaaccaca 256  Q
    |||||||| | ||||||||||||||||||||  ||| |||| ||| ||||||| ||| |  ||||||||| |||||||||||| ||||||    
T  2786668 cttagtgatagtaagtgtttactgtcagggaactaattgatagtaggtatgcacagatatggacctaacaacaagtctcccgccaccaca 2786579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 189 - 243
Target Start/End: Original strand, 42278752 - 42278806
Alignment:
Q  189 tgtcagggacgtaactgatggtaagtatgcatagacagagacctaacagcaagtc 243  Q
    |||||| ||| |||||||| ||||||||||| || |||||||||||||| |||||    
T  42278752 tgtcagagacctaactgatagtaagtatgcacagccagagacctaacagtaagtc 42278806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 164 - 236
Target Start/End: Original strand, 19051081 - 19051153
Alignment:
Q  164 gaccttagtgacaataagtgtttactgtcagggacgtaactgatggtaagtatgcatagacagagacctaaca 236  Q
    ||||||||||| | ||  ||||||||||||| ||| |||||||| |||| |||||| || ||| |||||||||    
T  19051081 gaccttagtgagagtacatgtttactgtcagagacctaactgatagtaaatatgcacagtcagggacctaaca 19051153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 131; Significance: 5e-68; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 7 - 256
Target Start/End: Complemental strand, 28063222 - 28062975
Alignment:
Q  7 gaattcaagatatacaaatacataatttgggaaaatgcgattcataaccagacctgaaagcctaaaacaattcttcatatattgctagaattgataaatt 106  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||| |||| | ||||||| ||||||||||||||||  | ||||||||||||||||    
T  28063222 gaattcaagatatacaaatacataatttgggaaaatgtgattcataactagacttaaaagcctgaaacaattcttcatat--tactagaattgataaatt 28063125  T
Q  107 gatataaaaaaggatcatagtaggtctactttgtgcttgtaactgtttattgtcagggaccttagtgacaataagtgtttactgtcagggacgtaactga 206  Q
     ||||| || ||||||||| |||| ||||||||||   |||| |||||| |||||||||||||||||||| | |||||||||||| | |||| |||||||    
T  28063124 aatatataataggatcataataggcctactttgtgtcggtaagtgtttactgtcagggaccttagtgacactgagtgtttactgttaaggacctaactga 28063025  T
Q  207 tggtaagtatgcatagacagagacctaacagcaagtctcccgcaaccaca 256  Q
    | ||||||||||| ||  || ||||||| |||||||||||||||||||||    
T  28063024 ttgtaagtatgcacagttagggacctaaaagcaagtctcccgcaaccaca 28062975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 7 - 256
Target Start/End: Complemental strand, 28005919 - 28005672
Alignment:
Q  7 gaattcaagatatacaaatacataatttgggaaaatgcgattcataaccagacctgaaagcctaaaacaattcttcatatattgctagaattgataaatt 106  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||| |||| | ||||||| ||||||||||||||||  | ||||||||||||||||    
T  28005919 gaattcaagatatacaaatacataatttgggaaaatgtgattcataactagacttaaaagcctgaaacaattcttcatat--tactagaattgataaatt 28005822  T
Q  107 gatataaaaaaggatcatagtaggtctactttgtgcttgtaactgtttattgtcagggaccttagtgacaataagtgtttactgtcagggacgtaactga 206  Q
     ||||| || ||||||||| |||| ||||||||||   |||| |||||| |||||||||||||||||||| | ||||||||||||   |||| |||||||    
T  28005821 aatatataataggatcataataggcctactttgtgtcggtaagtgtttactgtcagggaccttagtgacactgagtgtttactgttgaggacctaactga 28005722  T
Q  207 tggtaagtatgcatagacagagacctaacagcaagtctcccgcaaccaca 256  Q
    | ||||||||||| ||  || ||||||| |||||||||||||||||||||    
T  28005721 ttgtaagtatgcacagttagggacctaaaagcaagtctcccgcaaccaca 28005672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 7 - 254
Target Start/End: Complemental strand, 36033257 - 36033020
Alignment:
Q  7 gaattcaagatatacaaatacataatttgggaaaatgcgattcataaccagacctgaaagcctaaaacaattcttcatatattgctagaattgataaatt 106  Q
    ||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||| | ||||||||||||  ||||||||||        ||||    
T  36033257 gaattcaagatatacaaatacataatttgagaaaatgtgattcataaccagacctgaaagcttgaaacaattcttc--atattgctag--------aatt 36033168  T
Q  107 gatataaaaaaggatcatagtaggtctactttgtgcttgtaactgtttattgtcagggaccttagtgacaataagtgtttactgtcagggacgtaactga 206  Q
    ||||||||| |  ||||||||||| ||| ||||||||||||| |||||| ||| |||||||||||||| ||  ||||||||||||||| ||| |||||||    
T  36033167 gatataaaatataatcatagtaggcctattttgtgcttgtaagtgtttactgttagggaccttagtgataacgagtgtttactgtcagagacttaactga 36033068  T
Q  207 tggtaagtatgcatagacagagacctaacagcaagtctcccgcaacca 254  Q
    | |||||| |||| || |||  |||||||| |||||||| || |||||    
T  36033067 tagtaagtgtgcacagtcaggaacctaacaacaagtctctcgtaacca 36033020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 7 - 254
Target Start/End: Complemental strand, 31074584 - 31074345
Alignment:
Q  7 gaattcaagatatacaaatacataatttgggaaaatgcgattcataaccagacctgaaagcctaaaacaattcttcatatattgctagaattgataaatt 106  Q
    |||||||||||||||||||||| |||||||||||||| ||||||||||||||||||| |   ||| |  || ||    || |||||||||||||||||||    
T  31074584 gaattcaagatatacaaatacaaaatttgggaaaatgtgattcataaccagacctgaca---taagatcatact----at-ttgctagaattgataaatt 31074493  T
Q  107 gatataaaaaaggatcatagtaggtctactttgtgcttgtaactgtttattgtcagggaccttagtgacaataagtgtttactgtcagggacgtaactga 206  Q
    ||||||||| |||||||||||||| ||| ||||||  ||||| |||||| | ||| |||||||||||||| ||||||  |||||||| |||  |||||||    
T  31074492 gatataaaataggatcatagtaggcctattttgtgtctgtaagtgtttactctcatggaccttagtgacagtaagtgcatactgtcaaggatctaactga 31074393  T
Q  207 tggtaagtatgcatagacagagacctaacagcaagtctcccgcaacca 254  Q
    | |||||||||||||| ||| ||||||||| ||| |||| | ||||||    
T  31074392 tagtaagtatgcatagtcagggacctaacatcaaatctcacacaacca 31074345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 24 - 257
Target Start/End: Complemental strand, 28525338 - 28525105
Alignment:
Q  24 atacataatttgggaaaatgcgattcataaccagacctgaaagcctaaaacaattcttcatatattgctagaattgataaattgatataaaaaaggatca 123  Q
    ||||| ||||||  |||||| |||||||||| |||||||||| ||| ||||||||||||||||  |||||||||| |||||||||| ||||| |||||||    
T  28525338 atacagaatttgcaaaaatgtgattcataactagacctgaaaacctgaaacaattcttcatat--tgctagaatt-ataaattgatctaaaataggatca 28525242  T
Q  124 tagtaggtctactttgtgcttgtaactgtttattgtcagggaccttagtgacaataagtgtttactgtcagggac---gtaactgatggtaagtatgcat 220  Q
    ||||||| ||| ||||||  ||||| |||| | |||||| || |||||||||||||||| ||||||||||| |||    |||||||| |||||||||||     
T  28525241 tagtaggcctagtttgtgtctgtaagtgttcactgtcagagagcttagtgacaataagtatttactgtcagagacctgctaactgatagtaagtatgcac 28525142  T
Q  221 agacagagacctaacagcaagtctcccgcaaccacaa 257  Q
    ||  |||||||||||| ||| ||| ||||| ||||||    
T  28525141 agttagagacctaacaacaaatcttccgcagccacaa 28525105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 7 - 148
Target Start/End: Original strand, 9626021 - 9626160
Alignment:
Q  7 gaattcaagatatacaaatacataatttgggaaaatgcgattcataaccagacctgaaagcctaaaacaattcttcatatattgctagaattgataaatt 106  Q
    |||||||||||||||||||||| ||||||  |||||| |||||||||||| |||||||||||| |||| |||||||  |||||||||||||| |||||||    
T  9626021 gaattcaagatatacaaatacaaaatttgaaaaaatgtgattcataaccatacctgaaagcctgaaacgattcttc--atattgctagaatttataaatt 9626118  T
Q  107 gatataaaaaaggatcatagtaggtctactttgtgcttgtaa 148  Q
    ||||||||| ||||| |||||||| ||||||||||| |||||    
T  9626119 gatataaaataggattatagtaggcctactttgtgcctgtaa 9626160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 144 - 256
Target Start/End: Original strand, 28526250 - 28526364
Alignment:
Q  144 tgtaactgtttattgtcagggaccttagtgacaataagtgtttactgtcagggacgtaactgatggtaagtatgcatagacagagacctaacagc--aag 241  Q
    ||||| |||||| ||||| |||||||||||| | ||||||||||||||||||||| |||||||| ||||||||||| || ||| ||||||||| |  |||    
T  28526250 tgtaattgtttactgtcatggaccttagtgaaagtaagtgtttactgtcagggacctaactgatagtaagtatgcacagtcagggacctaacatcaaaag 28526349  T
Q  242 tctcccgcaaccaca 256  Q
    |||||||||||||||    
T  28526350 tctcccgcaaccaca 28526364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 138 - 249
Target Start/End: Original strand, 31074984 - 31075095
Alignment:
Q  138 tgtgcttgtaactgtttattgtcagggaccttagtgacaataagtgtttactgtcagggacgtaactgatggtaagtatgcatagacagagacctaacag 237  Q
    |||| |||||| |||||||||||||||| |||||||||| |||||||||||| |||||||| |||||||| |||||||||||||  |||| | |||| |     
T  31074984 tgtgtttgtaagtgtttattgtcagggatcttagtgacagtaagtgtttactatcagggacctaactgatagtaagtatgcataatcagatatctaaaaa 31075083  T
Q  238 caagtctcccgc 249  Q
    ||||||||||||    
T  31075084 caagtctcccgc 31075095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 134 - 256
Target Start/End: Original strand, 12637429 - 12637551
Alignment:
Q  134 actttgtgcttgtaactgtttattgtcagggaccttagtgacaataagtgtttactgtcagggacgtaactgatggtaagtatgcatagacagagaccta 233  Q
    ||||||||| ||||| |||||| ||||||| |||||||||||| |||||||||||||||||| || |||||||| ||||||||| ||||  || |||| |    
T  12637429 actttgtgcctgtaagtgtttactgtcaggaaccttagtgacagtaagtgtttactgtcaggaacctaactgatagtaagtatgtatagttagggaccga 12637528  T
Q  234 acagcaagtctcccgcaaccaca 256  Q
    ||  |||||||||  ||||||||    
T  12637529 acgacaagtctcctacaaccaca 12637551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 178 - 256
Target Start/End: Original strand, 28006313 - 28006391
Alignment:
Q  178 taagtgtttactgtcagggacgtaactgatggtaagtatgcatagacagagacctaacagcaagtctcccgcaaccaca 256  Q
    ||||||||||||||||||||| |||||||| ||||||||||| |  ||| |||||||||| ||||||| ||||||||||    
T  28006313 taagtgtttactgtcagggacctaactgatagtaagtatgcacaatcagggacctaacagaaagtctctcgcaaccaca 28006391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 178 - 256
Target Start/End: Original strand, 28063616 - 28063694
Alignment:
Q  178 taagtgtttactgtcagggacgtaactgatggtaagtatgcatagacagagacctaacagcaagtctcccgcaaccaca 256  Q
    ||||||||||||||||||||| |||||||| ||||||||||| |  ||| |||||||||| ||||||| ||||||||||    
T  28063616 taagtgtttactgtcagggacctaactgatagtaagtatgcacaatcagggacctaacagaaagtctctcgcaaccaca 28063694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 184 - 237
Target Start/End: Original strand, 32898188 - 32898241
Alignment:
Q  184 tttactgtcagggacgtaactgatggtaagtatgcatagacagagacctaacag 237  Q
    ||||||||||||||| |||||||| ||||||||||| || ||||||||||||||    
T  32898188 tttactgtcagggacctaactgatagtaagtatgcacagtcagagacctaacag 32898241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 181 - 236
Target Start/End: Complemental strand, 35177776 - 35177721
Alignment:
Q  181 gtgtttactgtcagggacgtaactgatggtaagtatgcatagacagagacctaaca 236  Q
    ||||||||||| |||||| |||||||| |||||||||||||| ||| |||||||||    
T  35177776 gtgtttactgtaagggacctaactgatagtaagtatgcatagtcagggacctaaca 35177721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 182 - 242
Target Start/End: Complemental strand, 30134917 - 30134857
Alignment:
Q  182 tgtttactgtcagggacgtaactgatggtaagtatgcatagacagagacctaacagcaagt 242  Q
    ||||| ||||||||||| |||||||| ||||||||||| |  |||||||||||||| ||||    
T  30134917 tgtttgctgtcagggacctaactgatagtaagtatgcacaatcagagacctaacagtaagt 30134857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 156 - 219
Target Start/End: Original strand, 5965137 - 5965200
Alignment:
Q  156 ttgtcagggaccttagtgacaataagtgtttactgtcagggacgtaactgatggtaagtatgca 219  Q
    ||||||||||||||||||| | ||  |||||||| |||||||| ||| |||| |||||||||||    
T  5965137 ttgtcagggaccttagtgagagtacatgtttactctcagggacctaattgatagtaagtatgca 5965200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 106; Significance: 4e-53; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 5 - 173
Target Start/End: Original strand, 330561 - 330727
Alignment:
Q  5 acgaattcaagatatacaaatacataatttgggaaaatgcgattcataaccagacctgaaagcctaaaacaattcttcatatattgctagaattgataaa 104  Q
    ||||||||||||||||||||||||||||||||||||||| ||||| || |||| ||| ||||||| |||||||||||||||| |  ||||||||||||||    
T  330561 acgaattcaagatatacaaatacataatttgggaaaatgtgattcgtagccaggcctaaaagccttaaacaattcttcatattt--ctagaattgataaa 330658  T
Q  105 ttgatataaaaaaggatcatagtaggtctactttgtgcttgtaactgtttattgtcagggaccttagtg 173  Q
    ||||||||||| | ||||||| ||| |||||||||||||||||| |||||| |||||||||||||||||    
T  330659 ttgatataaaataagatcataatagatctactttgtgcttgtaagtgtttactgtcagggaccttagtg 330727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 134 - 250
Target Start/End: Complemental strand, 24287897 - 24287781
Alignment:
Q  134 actttgtgcttgtaactgtttattgtcagggaccttagtgacaataagtgtttactgtcagggacgtaactgatggtaagtatgcatagacagagaccta 233  Q
    ||||||||| ||||| |||||| |||||||||  ||||||||| |||||||||||||||||||||  ||||||| |||||||||||||| ||  ||||||    
T  24287897 actttgtgcctgtaagtgtttactgtcagggattttagtgacattaagtgtttactgtcagggaccaaactgatagtaagtatgcatagtcaaggaccta 24287798  T
Q  234 acagcaagtctcccgca 250  Q
    ||| |||||||| ||||    
T  24287797 acaacaagtctctcgca 24287781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 156 - 237
Target Start/End: Original strand, 33607232 - 33607313
Alignment:
Q  156 ttgtcagggaccttagtgacaataagtgtttactgtcagggacgtaactgatggtaagtatgcatagacagagacctaacag 237  Q
    |||||||||| |||||||||||||  |||||||| | | |||| |||||||| ||||||||||| || ||| ||||||||||    
T  33607232 ttgtcagggatcttagtgacaatacatgtttactattatggacctaactgatagtaagtatgcaaagtcagggacctaacag 33607313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 181 - 236
Target Start/End: Original strand, 30924757 - 30924812
Alignment:
Q  181 gtgtttactgtcagggacgtaactgatggtaagtatgcatagacagagacctaaca 236  Q
    ||||||| |||||||||| |||||||| ||||||||||| || |||||||||||||    
T  30924757 gtgtttattgtcagggacctaactgatagtaagtatgcacagtcagagacctaaca 30924812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 138 - 219
Target Start/End: Complemental strand, 330171 - 330090
Alignment:
Q  138 tgtgcttgtaactgtttattgtcagggaccttagtgacaataagtgtttactgtcagggacgtaactgatggtaagtatgca 219  Q
    ||||| ||||| |||||| ||||| ||||||| |||||||||| |||||||| |   |||| |||||||| |||||||||||    
T  330171 tgtgcctgtaagtgtttactgtcacggaccttggtgacaataaatgtttactatttaggacctaactgatagtaagtatgca 330090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 181 - 234
Target Start/End: Original strand, 7259433 - 7259486
Alignment:
Q  181 gtgtttactgtcagggacgtaactgatggtaagtatgcatagacagagacctaa 234  Q
    |||||||||||||||||| |||||||| ||||||||||| || ||| |||||||    
T  7259433 gtgtttactgtcagggacctaactgatagtaagtatgcacagtcagggacctaa 7259486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 181 - 236
Target Start/End: Complemental strand, 10894726 - 10894671
Alignment:
Q  181 gtgtttactgtcagggacgtaactgatggtaagtatgcatagacagagacctaaca 236  Q
    |||||||||||||||||| |||||| | ||||||||||| || |||| ||||||||    
T  10894726 gtgtttactgtcagggacctaactggtagtaagtatgcacagtcagatacctaaca 10894671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 185 - 256
Target Start/End: Original strand, 25621458 - 25621529
Alignment:
Q  185 ttactgtcagggacgtaactgatggtaagtatgcatagacagagacctaacagcaagtctcccgcaaccaca 256  Q
    |||||||||| ||| |||||||| ||||||||||| |  ||   |||||||| |||||||||||||||||||    
T  25621458 ttactgtcagagacctaactgatagtaagtatgcacaatcaagaacctaacaacaagtctcccgcaaccaca 25621529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 189 - 242
Target Start/End: Complemental strand, 48646423 - 48646370
Alignment:
Q  189 tgtcagggacgtaactgatggtaagtatgcatagacagagacctaacagcaagt 242  Q
    |||||||||| |||||||| ||||||||||| || ||| |||||||||| ||||    
T  48646423 tgtcagggacctaactgatagtaagtatgcacagtcagggacctaacagtaagt 48646370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 181 - 237
Target Start/End: Complemental strand, 48787666 - 48787610
Alignment:
Q  181 gtgtttactgtcagggacgtaactgatggtaagtatgcatagacagagacctaacag 237  Q
    ||||||||||||||| || |||||||| |||| |||||| || ||| ||||||||||    
T  48787666 gtgtttactgtcaggaacctaactgatagtaaatatgcacagtcagtgacctaacag 48787610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 103; Significance: 3e-51; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 7 - 256
Target Start/End: Complemental strand, 11060194 - 11059949
Alignment:
Q  7 gaattcaagatatacaaatacataatttgggaaaatgcgattcataaccagacctgaaagcctaaaacaattcttcatatattgctagaattgataaatt 106  Q
    |||||||||| ||||||||||| ||||||  |||||| |||||||||||||| ||||||| || ||| ||||||| ||||  ||||| |||||||||| |    
T  11060194 gaattcaagaaatacaaatacaaaatttgaaaaaatgtgattcataaccagatctgaaagtctgaaataattcttgatat--tgctaaaattgataaact 11060097  T
Q  107 gatataaaaaaggatcatagtaggtctactttgtgcttgtaactgtttattgtcagggaccttagtgacaataagtgtttactgtcagggacgtaactga 206  Q
    ||||||||| |  ||||||| ||  |||||||||||| |||| |||||||| |||||||||||||| ||||||||||||||||||||||||| |||||||    
T  11060096 gatataaaataa-atcatagcagacctactttgtgct-gtaagtgtttattatcagggaccttagtaacaataagtgtttactgtcagggacataactga 11059999  T
Q  207 tggtaagtatgcatagacagagacctaacagcaagtctcccgcaaccaca 256  Q
    |  |||||||| | || ||  ||||||||| |||||||||| ||||||||    
T  11059998 taataagtatgtacagtcaatgacctaacatcaagtctccctcaaccaca 11059949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 7 - 219
Target Start/End: Complemental strand, 1408226 - 1408013
Alignment:
Q  7 gaattcaagatatacaaatacataattt-gggaaaatgcgattcataaccaga-cctgaaagcctaaaacaattcttcatatattgctagaattgataaa 104  Q
    ||||| |||||||| ||||||| ||||| ||||||||| |||||||||||| | ||||||||| | ||| ||||||||||||  ||||| ||||||||||    
T  1408226 gaatttaagatataaaaatacagaattttgggaaaatgtgattcataaccaaaacctgaaagcttgaaaaaattcttcatat--tgctataattgataaa 1408129  T
Q  105 ttgatataaaaaaggatcatagt-aggtctactttgtgcttgtaactgtttattgtcagggaccttagtgacaataagtgtttactgtcagggacgtaac 203  Q
    |||| |||||| ||||||||||  ||| ||||| ||||| ||||| |||||| |||||| ||||||||||||||||||||| ||||| ||||||| ||||    
T  1408128 ttgacataaaataggatcataggcaggcctactctgtgcctgtaagtgtttactgtcagagaccttagtgacaataagtgtatactgccagggacctaac 1408029  T
Q  204 tgatggtaagtatgca 219  Q
    || | |||| ||||||    
T  1408028 tggtagtaaatatgca 1408013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 7 - 222
Target Start/End: Complemental strand, 44719941 - 44719729
Alignment:
Q  7 gaattcaagatatacaaatacataatttgggaaaatgcgattcataaccagacctgaaagcctaaaacaattcttcatatattgctagaattgataaatt 106  Q
    |||||||||||||||||||||| |||||||||||||| |||||||||||||| || ||||| | |||||||| |||  |||||| || ||||||||||||    
T  44719941 gaattcaagatatacaaatacaaaatttgggaaaatgtgattcataaccagatctaaaagcttgaaacaatttttc--atattgataaaattgataaatt 44719844  T
Q  107 gatataaaaaaggatcatagtaggtctactttgtgcttgtaactgtttattgtcagggaccttagtgacaataagtgtttactgtcagggacgtaactga 206  Q
    ||||||||  ||||||||||||||  |||||||||  | ||| | |||| | ||||||| |||||||||| ||||||||| |||||| | || ||||| |    
T  44719843 gatataaattaggatcatagtaggcttactttgtgtctataagt-tttactatcagggatcttagtgacagtaagtgtttgctgtcaagaacctaactta 44719745  T
Q  207 tggtaagtatgcatag 222  Q
    | |||||||| |||||    
T  44719744 tagtaagtattcatag 44719729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 144 - 256
Target Start/End: Original strand, 11060463 - 11060575
Alignment:
Q  144 tgtaactgtttattgtcagggaccttagtgacaataagtgtttactgtcagggacgtaactgatggtaagtatgcatagacagagacctaacagcaagtc 243  Q
    ||||| |||||| |||||||||||||||| ||| |||||||||||||| |||||| |||||||| ||||||||||| |  ||| || |||||||||||||    
T  11060463 tgtaagtgtttactgtcagggaccttagtaacagtaagtgtttactgttagggacataactgatagtaagtatgcacaatcagtgatctaacagcaagtc 11060562  T
Q  244 tcccgcaaccaca 256  Q
    |||||||||||||    
T  11060563 tcccgcaaccaca 11060575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 144 - 254
Target Start/End: Original strand, 44720549 - 44720659
Alignment:
Q  144 tgtaactgtttattgtcagggaccttagtgacaataagtgtttactgtcagggacgtaactgatggtaagtatgcatagacagagacctaacagcaagtc 243  Q
    ||||| |||||| | | |||||| ||||||||  |||||||||| ||||| |||| |||||||| |||||||| || ||  ||||| |||||| ||||||    
T  44720549 tgtaagtgtttactattagggactttagtgacggtaagtgtttattgtcaaggacctaactgatagtaagtatacacagttagagatctaacaacaagtc 44720648  T
Q  244 tcccgcaacca 254  Q
    |||||||||||    
T  44720649 tcccgcaacca 44720659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 150 - 216
Target Start/End: Complemental strand, 8975594 - 8975528
Alignment:
Q  150 tgtttattgtcagggaccttagtgacaataagtgtttactgtcagggacgtaactgatggtaagtat 216  Q
    |||||| ||||||||||| |||| ||| ||||||||||  ||||||||| |||||||| ||||||||    
T  8975594 tgtttactgtcagggaccatagttacagtaagtgtttatagtcagggacctaactgatagtaagtat 8975528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 182 - 234
Target Start/End: Complemental strand, 7944541 - 7944489
Alignment:
Q  182 tgtttactgtcagggacgtaactgatggtaagtatgcatagacagagacctaa 234  Q
    ||||||||||||||||| |||||||| ||||||||||| |  |||||||||||    
T  7944541 tgtttactgtcagggacctaactgatagtaagtatgcacattcagagacctaa 7944489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 144 - 260
Target Start/End: Original strand, 50106866 - 50106981
Alignment:
Q  144 tgtaactgtttattgtcagggaccttagtgacaataagtgtttactgtcagggacgtaactgatggtaagtatgcatagacagagacctaacagcaagtc 243  Q
    ||||| |||||| ||||| |||||||||||| | | ||||| || | |||||||| ||| ||||  |||||||||| |  ||| ||||||||| ||||||    
T  50106866 tgtaagtgtttactgtcatggaccttagtgatagtgagtgtataatatcagggacttaattgatactaagtatgcacaatcag-gacctaacaacaagtc 50106964  T
Q  244 tcccgcaaccacaaaac 260  Q
    ||||  |||||||||||    
T  50106965 tcccttaaccacaaaac 50106981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 189 - 236
Target Start/End: Original strand, 7945323 - 7945370
Alignment:
Q  189 tgtcagggacgtaactgatggtaagtatgcatagacagagacctaaca 236  Q
    |||||||||| |||||||| ||||||||||| || |||||||||||||    
T  7945323 tgtcagggacctaactgatagtaagtatgcacagtcagagacctaaca 7945370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 189 - 242
Target Start/End: Original strand, 9340789 - 9340842
Alignment:
Q  189 tgtcagggacgtaactgatggtaagtatgcatagacagagacctaacagcaagt 242  Q
    |||||||||| |||||||| ||||||||||| || ||| |||||||||| ||||    
T  9340789 tgtcagggacctaactgatagtaagtatgcacagtcagggacctaacagtaagt 9340842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 102; Significance: 1e-50; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 21 - 193
Target Start/End: Original strand, 26585884 - 26586054
Alignment:
Q  21 caaatacataatttgggaaaatgcgattcataaccagacctgaaagcctaaaacaattcttcatatattgctagaattgataaattgatataaaaaagga 120  Q
    |||||||||||||||| |||||| ||||||||| || ||||| |||||| ||||||||||||||||  || |||||||||||||||||||||||| ||||    
T  26585884 caaatacataatttggaaaaatgtgattcataatcaaacctggaagcctgaaacaattcttcatat--tgttagaattgataaattgatataaaatagga 26585981  T
Q  121 tcatagtaggtctactttgtgcttgtaactgtttattgtcagggaccttagtgacaataagtgtttactgtca 193  Q
    ||||| |||| ||||||||||  ||||| ||||||  ||||||||||||||||||||||||||||||||||||    
T  26585982 tcataataggcctactttgtgtctgtaagtgtttacagtcagggaccttagtgacaataagtgtttactgtca 26586054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 62 - 255
Target Start/End: Complemental strand, 18675624 - 18675433
Alignment:
Q  62 gaaagcctaaaacaattcttcatatattgctagaattgataaattgatataaaaaaggatcatagtaggtctactttgtgcttgtaactgtttattgtca 161  Q
    |||||||| |||||||| |||||||  |  |||||||||||||||||||||||| |||||||||| | | ||||||||| | ||||| |||||| |||||    
T  18675624 gaaagcctcaaacaatttttcatatcgt--tagaattgataaattgatataaaataggatcatagcaagactactttgtacctgtaagtgtttactgtca 18675527  T
Q  162 gggaccttagtgacaataagtgtttactgtcagggacgtaactgatggtaagtatgcatagacagagacctaacagcaagtctcccgcaaccac 255  Q
     |||| ||||||||||||| | |||| |||||||||| |||||||| ||||||||||| || |||  |||||||| ||||||||||| ||||||    
T  18675526 aggacattagtgacaataaatatttattgtcagggacctaactgatagtaagtatgcacagtcaggaacctaacatcaagtctcccgtaaccac 18675433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 110 - 254
Target Start/End: Original strand, 38854170 - 38854316
Alignment:
Q  110 ataaaaaaggatcatagtaggtctactttgtgcttgtaactg--tttattgtcagggaccttagtgacaataagtgtttactgtcagggacgtaactgat 207  Q
    |||||| || ||||||||||| ||||||||||  | ||| ||  | |||||||| |||||||||||| | |||||| ||| |||||||||| || |||||    
T  38854170 ataaaatagaatcatagtaggcctactttgtgtctataagtgtatatattgtcatggaccttagtgatagtaagtgattattgtcagggacctagctgat 38854269  T
Q  208 ggtaagtatgcatagacagagacctaacagcaagtctcccgcaacca 254  Q
     ||||||||||| || || |||||||||| |||||||||||||||||    
T  38854270 agtaagtatgcacagtcaaagacctaacaacaagtctcccgcaacca 38854316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 150 - 260
Target Start/End: Original strand, 34582338 - 34582448
Alignment:
Q  150 tgtttattgtcagggaccttagtgacaataagtgtttactgtcagggacgtaactgatggtaagtatgcatagacagagacctaacagcaagtctcccgc 249  Q
    |||||| || ||||||||| ||||||| |||||||||||| |||||||| |||||||| |||||||||||||| ||  |||||| |||||||||  ||||    
T  34582338 tgtttactggcagggacctaagtgacagtaagtgtttactatcagggacctaactgatagtaagtatgcatagtcatggacctaccagcaagtcagccgc 34582437  T
Q  250 aaccacaaaac 260  Q
    |||||| ||||    
T  34582438 aaccactaaac 34582448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 7 - 77
Target Start/End: Complemental strand, 14886930 - 14886860
Alignment:
Q  7 gaattcaagatatacaaatacataatttgggaaaatgcgattcataaccagacctgaaagcctaaaacaat 77  Q
    ||||| |||||||||||||||| |||||||||||||| |||||| |||||||||||||||| | |||||||    
T  14886930 gaatttaagatatacaaatacagaatttgggaaaatgtgattcacaaccagacctgaaagcttgaaacaat 14886860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 156 - 219
Target Start/End: Original strand, 12004541 - 12004604
Alignment:
Q  156 ttgtcagggaccttagtgacaataagtgtttactgtcagggacgtaactgatggtaagtatgca 219  Q
    |||| |||||||||||||||| |||||||||||||||||| || |||||||| |||||||||||    
T  12004541 ttgttagggaccttagtgacagtaagtgtttactgtcaggaacctaactgatagtaagtatgca 12004604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 152 - 252
Target Start/End: Complemental strand, 15440937 - 15440837
Alignment:
Q  152 tttattgtcagggaccttagtgacaataagtgtttactgtcagggacgtaactgatggtaagtatgcatagacagagacctaacagcaagtctcccgcaa 251  Q
    |||| |||| |||| |||||||||| |||| |||||||||||||||| ||||||||  |||||||||| || || | || |||||| |||||||| ||||    
T  15440937 tttactgtcggggatcttagtgacagtaagagtttactgtcagggacctaactgataataagtatgcacagtcaaaaacttaacagtaagtctcctgcaa 15440838  T
Q  252 c 252  Q
    |    
T  15440837 c 15440837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 134 - 217
Target Start/End: Complemental strand, 12010643 - 12010560
Alignment:
Q  134 actttgtgcttgtaactgtttattgtcagggaccttagtgacaataagtgtttactgtcagggacgtaactgatggtaagtatg 217  Q
    ||||||||  ||||| |||||| | ||| |||||||||||||| ||||| |||||| |||||||| |||||||| |||||||||    
T  12010643 actttgtgtctgtaagtgtttactatcatggaccttagtgacattaagtatttactatcagggacctaactgatagtaagtatg 12010560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 110 - 236
Target Start/End: Original strand, 38855869 - 38855996
Alignment:
Q  110 ataaaaaaggatcatagtaggtctactttgtgcttgtaactgtttattgtcagggac-cttagtgacaataagtgtttactgtcagggacgtaactgatg 208  Q
    |||||| |||||| ||||||| ||||||||||  ||||| ||| || |||||  ||| || ||||| | ||||||||||||||||||||  ||||||||     
T  38855869 ataaaataggatcgtagtaggcctactttgtgtatgtaagtgtatactgtcatcgacactaagtgatagtaagtgtttactgtcagggaactaactgata 38855968  T
Q  209 gtaagtatgcatagacagagacctaaca 236  Q
    |||||||||||  | ||| |||||||||    
T  38855969 gtaagtatgcactgtcagggacctaaca 38855996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 181 - 237
Target Start/End: Complemental strand, 32765320 - 32765264
Alignment:
Q  181 gtgtttactgtcagggacgtaactgatggtaagtatgcatagacagagacctaacag 237  Q
    |||||||||||||||||| |||||||| ||||||||||| || ||| ||||||||||    
T  32765320 gtgtttactgtcagggacctaactgatagtaagtatgcacagtcagggacctaacag 32765264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 156 - 198
Target Start/End: Original strand, 12011028 - 12011070
Alignment:
Q  156 ttgtcagggaccttagtgacaataagtgtttactgtcagggac 198  Q
    |||| |||||||||||||||| |||||||||||||||||||||    
T  12011028 ttgttagggaccttagtgacagtaagtgtttactgtcagggac 12011070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 160 - 237
Target Start/End: Complemental strand, 2910504 - 2910427
Alignment:
Q  160 cagggaccttagtgacaataagtgtttactgtcagggacgtaactgatggtaagtatgcatagacagagacctaacag 237  Q
    ||||||| ||||||| | |  |||||||||||||||||| ||||||||  |||||||||| || ||| ||||||||||    
T  2910504 cagggactttagtgaaatttcgtgtttactgtcagggacctaactgatattaagtatgcacagtcagggacctaacag 2910427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 189 - 236
Target Start/End: Original strand, 32766029 - 32766076
Alignment:
Q  189 tgtcagggacgtaactgatggtaagtatgcatagacagagacctaaca 236  Q
    |||||||||| |||||||| ||||||||||| || |||||||||||||    
T  32766029 tgtcagggacctaactgatagtaagtatgcacagtcagagacctaaca 32766076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 178 - 219
Target Start/End: Original strand, 12011076 - 12011117
Alignment:
Q  178 taagtgtttactgtcagggacgtaactgatggtaagtatgca 219  Q
    ||||||||||||||||||||| |||||||| ||| |||||||    
T  12011076 taagtgtttactgtcagggacctaactgatagtatgtatgca 12011117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 134 - 222
Target Start/End: Complemental strand, 12004173 - 12004085
Alignment:
Q  134 actttgtgcttgtaactgtttattgtcagggaccttagtgacaataagtgtttactgtcagggacgtaactgatggtaagtatgcatag 222  Q
    ||||||||| ||||| |||||| | ||| |||||||||||||| ||||| |||||| | || |||  ||||||  || |||||||||||    
T  12004173 actttgtgcctgtaagtgtttactatcatggaccttagtgacattaagtatttactattagcgaccgaactgacagtgagtatgcatag 12004085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 181 - 237
Target Start/End: Complemental strand, 24458443 - 24458387
Alignment:
Q  181 gtgtttactgtcagggacgtaactgatggtaagtatgcatagacagagacctaacag 237  Q
    ||||| ||||| |||||| |||||||| ||||||||||| ||  |||||||||||||    
T  24458443 gtgttgactgtaagggacctaactgatagtaagtatgcacagtaagagacctaacag 24458387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 52; Significance: 7e-21; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 134 - 197
Target Start/End: Original strand, 29188112 - 29188175
Alignment:
Q  134 actttgtgcttgtaactgtttattgtcagggaccttagtgacaataagtgtttactgtcaggga 197  Q
    ||||||||| ||||| | ||||||||||||||||||||||||||||||||||||||||||||||    
T  29188112 actttgtgcatgtaagtatttattgtcagggaccttagtgacaataagtgtttactgtcaggga 29188175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 156 - 219
Target Start/End: Complemental strand, 40206457 - 40206394
Alignment:
Q  156 ttgtcagggaccttagtgacaataagtgtttactgtcagggacgtaactgatggtaagtatgca 219  Q
    ||||||||||||||||| ||| |||||||||||||| |||||| |||||||| |||||||||||    
T  40206457 ttgtcagggaccttagtaacagtaagtgtttactgttagggacctaactgatagtaagtatgca 40206394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 181 - 237
Target Start/End: Original strand, 17701668 - 17701724
Alignment:
Q  181 gtgtttactgtcagggacgtaactgatggtaagtatgcatagacagagacctaacag 237  Q
    |||||||||||||||||| |||||||| ||||||||||| || ||| ||||||||||    
T  17701668 gtgtttactgtcagggacctaactgatagtaagtatgcacagtcagggacctaacag 17701724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 181 - 237
Target Start/End: Complemental strand, 36279327 - 36279271
Alignment:
Q  181 gtgtttactgtcagggacgtaactgatggtaagtatgcatagacagagacctaacag 237  Q
    ||||||||| |||||||| |||||||| ||||||||||| || ||| ||||||||||    
T  36279327 gtgtttactttcagggacctaactgatagtaagtatgcacagtcagggacctaacag 36279271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 182 - 236
Target Start/End: Original strand, 52318066 - 52318120
Alignment:
Q  182 tgtttactgtcagggacgtaactgatggtaagtatgcatagacagagacctaaca 236  Q
    ||||||||||||||||| |||||||| ||||||||||| ||  | ||||||||||    
T  52318066 tgtttactgtcagggacctaactgatagtaagtatgcacagttaaagacctaaca 52318120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 182 - 219
Target Start/End: Complemental strand, 55388443 - 55388406
Alignment:
Q  182 tgtttactgtcagggacgtaactgatggtaagtatgca 219  Q
    ||||||||||||||||| |||||||| |||||||||||    
T  55388443 tgtttactgtcagggacctaactgatagtaagtatgca 55388406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 47; Significance: 7e-18; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 8 - 86
Target Start/End: Original strand, 33986966 - 33987044
Alignment:
Q  8 aattcaagatatacaaatacataatttgggaaaatgcgattcataaccagacctgaaagcctaaaacaattcttcatat 86  Q
    ||||||||||||||||||||| |||| ||||||||  ||||||| || | |||||||||||| ||||||||||||||||    
T  33986966 aattcaagatatacaaatacaaaattcgggaaaatatgattcatgactaaacctgaaagccttaaacaattcttcatat 33987044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 133 - 216
Target Start/End: Complemental strand, 19599431 - 19599348
Alignment:
Q  133 tactttgtgcttgtaactgtttattgtcagggaccttagtgacaataagtgtttactgtcagggacgtaactgatggtaagtat 216  Q
    |||||||||| | ||| |||||| |||||| ||| |||||||||||||||||||| | ||| ||||||||||||| ||| ||||    
T  19599431 tactttgtgcctataattgtttactgtcagagactttagtgacaataagtgtttattatcatggacgtaactgatagtaggtat 19599348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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