View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8175_low_60 (Length: 270)
Name: NF8175_low_60
Description: NF8175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8175_low_60 |
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Alignment Details
Target: chr5 (Bit Score: 221; Significance: 1e-121; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 1 - 252
Target Start/End: Original strand, 39119929 - 39120181
Alignment:
| Q |
1 |
tttctcagtcgttttgggcgttaactgtttcgtcttagtggcacaaagttacgcctgtccactgcgtatcatctagaaagtgatagtagatagaaatcat |
100 |
Q |
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| T |
39119929 |
tttctcagtcattttgggcgttaactgtttcgtcttagtggcacaaagttacgcctgtccactgcgtatcatctagaaagcgatagtagatagaaatcat |
39120028 |
T |
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| Q |
101 |
caacaaaacgcttcagcagtacttacgatgttttgtgcacgacaagcctaaactctgggggcgatacttac-ttgggctgagtggcactacaatactgca |
199 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||| |
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| T |
39120029 |
caacaaaacgcttcagcagtacttacgatgttttgtgcacgacaagcctaaactctgggggcgatacttacattgggctgagtggcactacgatactgca |
39120128 |
T |
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| Q |
200 |
agtcactctgccacaggtttgtctgcgtttcaggttgtctatagttgcaaacc |
252 |
Q |
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| T |
39120129 |
agtcactctgccacaagtttgtctgcgtttcaggttgtatatagtcgcaaacc |
39120181 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 1 - 244
Target Start/End: Complemental strand, 38611640 - 38611395
Alignment:
| Q |
1 |
tttctcagtcgttttgggcgttaactgtttcgtcttagtggcacaaagttacgcctgtccactgcgtatcatctagaaagtgatag-tagatagaaatca |
99 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||| ||| ||||||| | |||||||| | |||||||||||| |
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| T |
38611640 |
tttctcagtcgtttttggcgttaactgtttcgtcttagtggcacaaagttacgcctggccattgcatatcatccacaaagtgatggatagatagaaatcg |
38611541 |
T |
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| Q |
100 |
tcaacaaaacgcttcagcagtacttacgatgttttgtgcacgacaagcctaaactctgggggcgatacttac-ttgggctgagtggcactacaatactgc |
198 |
Q |
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| T |
38611540 |
tcaacaaaacgcttcagcagtacctacggtgttttctgcacgacaagcctaaactctgggggcgatacttacattgggccgaatgggactacaatacagc |
38611441 |
T |
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| Q |
199 |
aagtcactctgccacaggtttgtctgcgtttcaggttgtctatagt |
244 |
Q |
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| T |
38611440 |
aagtcactctgccacaggtttgtctgtgtttcaggttgtctatagt |
38611395 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 1 - 244
Target Start/End: Original strand, 39117718 - 39117965
Alignment:
| Q |
1 |
tttctcagtcgttttgggcgttaactgtttcgtcttagtggcacaaagttacgcctgtccactgcgtatcatctagaaagtgatag-tagatagaaatca |
99 |
Q |
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||||||||| ||||| ||||| ||||||||| | |||||||||||||||||||| |||||||||||||||||| | |||||||| | |||||||||||| |
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| T |
39117718 |
tttctcagttgtttttggcgtgaactgtttcattttagtggcacaaagttacgcttgtccactgcgtatcatccacaaagtgatggatagatagaaatcg |
39117817 |
T |
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| Q |
100 |
tcaacaaaacgcttcagcagtacttacgatgttttgtgcacgacaagcctaaactctgggggcgatac--ttac-ttgggctgagtggcactacaatact |
196 |
Q |
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||||||||||| |||||||||| |||| |||||||||||||||||||||||||||||||||| |||| |||| |||| | ||||||||| |||||| |
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| T |
39117818 |
tcaacaaaacgtttcagcagtagctacggtgttttgtgcacgacaagcctaaactctgggggcaatacaattacattggtccaagtggcacttcaataca |
39117917 |
T |
|
| Q |
197 |
gcaagtcactctgccacaggtttgtctgcgtttcaggttgtctatagt |
244 |
Q |
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| |||||||||||||||||| ||||||| |||||||||||| |||||| |
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| T |
39117918 |
ggaagtcactctgccacagggttgtctgtgtttcaggttgtttatagt |
39117965 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 134
Target Start/End: Complemental strand, 38612598 - 38612464
Alignment:
| Q |
1 |
tttctcagtcgttttgggcgttaactgtttcgtcttagtggcacaaagttacgcctgtccactgcgtatcatctagaaagtgatag-tagatagaaatca |
99 |
Q |
| |
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||||||||||||||| ||||| |||||||||||||||||||||||||||||||| |||| |||| |||||||| | |||||||| | ||| |||||||| |
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| T |
38612598 |
tttctcagtcgtttttggcgtgaactgtttcgtcttagtggcacaaagttacgcttgtctactgtgtatcatccacaaagtgatggataggtagaaatcg |
38612499 |
T |
|
| Q |
100 |
tcaacaaaacgcttcagcagtacttacgatgtttt |
134 |
Q |
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|||||||||| |||||||||||| |||| |||||| |
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| T |
38612498 |
tcaacaaaacacttcagcagtacctacggtgtttt |
38612464 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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