View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8175_low_68 (Length: 255)
Name: NF8175_low_68
Description: NF8175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8175_low_68 |
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Alignment Details
Target: chr2 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 32898000 - 32898240
Alignment:
| Q |
1 |
gttgatgatttatctcgattaggattttttgtactttttgagatgaatgattactgcagagaattaatcaatcttgacacatcatttacatgttaatggt |
100 |
Q |
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| T |
32898000 |
gttgatgatttatctcgattaggattttttgtactttttgagatgaatgattactgcagagaattaatcaatcttgacacatcatttacatgttaatggt |
32898099 |
T |
|
| Q |
101 |
tattaccctatggtgcatgtaagagtttcttatcacacttttgtgaatacatgagtttgcatgggaaccataaccattcacatcaatttttcaaaaactg |
200 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
32898100 |
tattaccctatggtgcatgtaagagtttcctatcacacttttgtgaatacatgagtttgcatgggaaccataaccattcacattcatttttcaaaaacta |
32898199 |
T |
|
| Q |
201 |
ttttgcttatgctaaaaactagtatgtacgtatatctctgc |
241 |
Q |
| |
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||||||||||||| |||||||||||||||||||||| |||| |
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| T |
32898200 |
ttttgcttatgcttaaaactagtatgtacgtatatcactgc |
32898240 |
T |
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