View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8175_low_7 (Length: 558)
Name: NF8175_low_7
Description: NF8175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8175_low_7 |
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Alignment Details
Target: chr2 (Bit Score: 503; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 503; E-Value: 0
Query Start/End: Original strand, 1 - 542
Target Start/End: Original strand, 37769133 - 37769679
Alignment:
| Q |
1 |
aagttaatgtcattgttttgacatcaatgtttttctgttgtttttgtctttgtaacgcatgttctcgccagctaaaaagggttggtaaatctcgcaaaga |
100 |
Q |
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| T |
37769133 |
aagttaatgtcattgttttgacatcaatgtttttctgttgtttttgtctttgcaacacatgttctcaccagctaaaaagggttggtaaatctcgcaaaga |
37769232 |
T |
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| Q |
101 |
tgtgagttcaactcttgctgctggtgtgaggtcacaccctcgcagctttgagccatgaggcttggctatggtgaaccctgggacccaactcacctaacct |
200 |
Q |
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| T |
37769233 |
tgtgagttcaactctcgctgctggtgtgaggtcacaccctcgcagctttgagccatgaggcttggctatggtgaaccctgggacccaactcacctaacct |
37769332 |
T |
|
| Q |
201 |
tttattcgcagc-----tgcaattgcgatcgcaaccaaatcataaagatagttaaaaggggtgctcctaagaataaaaatttctttagcacaagtggaag |
295 |
Q |
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| T |
37769333 |
tttattcgcagcgtagctgcaattgcgatcacaaccaaatcataaagatagttaaaaggggtgctcctaagaataaaaatttctttagcacaagtggaag |
37769432 |
T |
|
| Q |
296 |
ggcacaagtttcgtgtgttgttatctattcttcccaattgggaggtagctgagattggaagaaacctgaaacatctgttcatgtcaaattttcctgctct |
395 |
Q |
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| T |
37769433 |
ggcacaagtttcgtgtgttgttatctattcttcccaattgggaggtagctgatattggaagaaacctgaaacatctgttcatgtcaaattttcctgctct |
37769532 |
T |
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| Q |
396 |
tttctctgtttggcactgttacttatatctaaaaatgcaaggtagagaaagttgttatgaaattcaatcagaacgtggttggttgttgcacaaatttaat |
495 |
Q |
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| T |
37769533 |
tttctctgtttggcactgttacttatatctaaaaatgcaaggtagagaaagttgttatgaaattcaatcagaacgtggttggttgttgcacaaatttaat |
37769632 |
T |
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| Q |
496 |
ttgtcacaaatcttcacctgaaatactaatagtagataatgatattt |
542 |
Q |
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| T |
37769633 |
ttgtcacaaatcttcacctgaaatactaatagtagataatgatattt |
37769679 |
T |
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