View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8175_low_71 (Length: 254)
Name: NF8175_low_71
Description: NF8175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8175_low_71 |
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Alignment Details
Target: chr3 (Bit Score: 199; Significance: 1e-108; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 41 - 251
Target Start/End: Original strand, 5343630 - 5343840
Alignment:
| Q |
41 |
aggaagcattaattattttttattattgattattgatgatggtagctattgagttgagcaaaaatgttgagggtgttcatattgaatatgttaatatttc |
140 |
Q |
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| T |
5343630 |
aggaagtattaattattttttattattgattattgatgatggtagctattgagttgagcaaaaatgtggagggtgttcatattgaatatgttaatatttc |
5343729 |
T |
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| Q |
141 |
aaatctaccattgttgaacactgatcttgagaaagaagggacttatccagttgaagttgaatcctttcggaaaaagattcttggagctgatagctttctc |
240 |
Q |
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| T |
5343730 |
aaatctaccattgttgaacactgatcttgagaaagaagggacttatccagttgaagttgaatcctttcggaaaaagattcttggagctgatagctttctc |
5343829 |
T |
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| Q |
241 |
tctgcttctcc |
251 |
Q |
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| T |
5343830 |
tttgcttctcc |
5343840 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 81 - 251
Target Start/End: Original strand, 5351452 - 5351625
Alignment:
| Q |
81 |
ggtagctattgagttgagcaaaaatgt---tgagggtgttcatattgaatatgttaatatttcaaatctaccattgttgaacactgatcttgagaaagaa |
177 |
Q |
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| T |
5351452 |
ggtagcgattgagctgagcaaaaatgtggttgagggtgttgatattgagtacattgatatttcaactttaccaatgttgaacactgatctagagatagaa |
5351551 |
T |
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| Q |
178 |
gggacttatccagttgaagttgaatcctttcggaaaaagattcttggagctgatagctttctctctgcttctcc |
251 |
Q |
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| T |
5351552 |
gggaattttccagctgaagttgaagcttttcgtcaaaagattcttgctgctgatagtgttctctttgcttctcc |
5351625 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 134 - 251
Target Start/End: Complemental strand, 5339556 - 5339439
Alignment:
| Q |
134 |
atatttcaaatctaccattgttgaacactgatcttgagaaagaagggacttatccagttgaagttgaatcctttcggaaaaagattcttggagctgatag |
233 |
Q |
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| T |
5339556 |
atatttcgaatttgccattgttgaacactgatcttgaggaagaagggacttttcctcttgaagttgaagattttcgtgattatattcttggagctgatag |
5339457 |
T |
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| Q |
234 |
ctttctctctgcttctcc |
251 |
Q |
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| T |
5339456 |
ctttctatttgcttctcc |
5339439 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 152 - 251
Target Start/End: Complemental strand, 5325594 - 5325495
Alignment:
| Q |
152 |
tgttgaacactgatcttgagaaagaagggacttatccagttgaagttgaatcctttcggaaaaagattcttggagctgatagctttctctctgcttctcc |
251 |
Q |
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| T |
5325594 |
tgttgaacactgatcttgagaaagaaggaacttttcctgctgaagttgaagcatttcgtcataagattcttgaagctgatagtgttctctttgcttctcc |
5325495 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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