View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8175_low_72 (Length: 251)

Name: NF8175_low_72
Description: NF8175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8175_low_72
NF8175_low_72
[»] chr5 (5 HSPs)
chr5 (1-236)||(15801600-15801835)
chr5 (1-234)||(12596350-12596590)
chr5 (1-153)||(30416632-30416784)
chr5 (4-181)||(20837133-20837310)
chr5 (4-181)||(20810778-20810955)
[»] chr8 (13 HSPs)
chr8 (1-234)||(3362838-3363071)
chr8 (1-222)||(3392812-3393033)
chr8 (1-234)||(3313468-3313701)
chr8 (1-214)||(3408546-3408759)
chr8 (1-214)||(7165893-7166106)
chr8 (1-214)||(3287681-3287894)
chr8 (1-214)||(3326209-3326422)
chr8 (49-214)||(3263802-3263967)
chr8 (3-217)||(3268454-3268668)
chr8 (15-187)||(13786303-13786475)
chr8 (1-154)||(31174549-31174702)
chr8 (1-145)||(3399846-3399990)
chr8 (50-146)||(13807603-13807699)
[»] chr3 (2 HSPs)
chr3 (3-211)||(32412191-32412399)
chr3 (1-146)||(6907076-6907221)
[»] scaffold0468 (1 HSPs)
scaffold0468 (1-146)||(7482-7627)
[»] chr2 (1 HSPs)
chr2 (1-174)||(14768143-14768317)
[»] chr7 (1 HSPs)
chr7 (2-181)||(8372957-8373136)
[»] chr6 (1 HSPs)
chr6 (79-181)||(31060156-31060258)


Alignment Details
Target: chr5 (Bit Score: 232; Significance: 1e-128; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 15801835 - 15801600
Alignment:
Q  1 gcttgttattcttttcaacttttaggaggcttctctctaccagcacttctattccaatatcagcatgaagtccacacccatttagtatctctgtaacata 100  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15801835 gcttgttattcttttcaacttttaggaggcttctctctatcagcacttctattccaatatcagcatgaagtccacacccatttagtatctctgtaacata 15801736  T
Q  101 agctctatccttaccgataaagaaacaacagacatcaagaaatatattcttttccatatgatcctctaaaccatcaaagcttatttttagtttctcgtgt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15801735 agctctatccttaccgataaagaaacaacagacatcaagaaatatattcttttccatatgatcctctaaaccatcaaagcttatttttagtttctcgtgt 15801636  T
Q  201 atttgatcattgggtatcttttgtagcttggatatt 236  Q
    ||||||||||||||||||||||||||||||||||||    
T  15801635 atttgatcattgggtatcttttgtagcttggatatt 15801600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 1 - 234
Target Start/End: Complemental strand, 12596590 - 12596350
Alignment:
Q  1 gcttgttattcttttcaacttttaggaggcttctctctaccag-------cacttctattccaatatcagcatgaagtccacacccatttagtatctctg 93  Q
    |||||||||||||||||||||||| |||||||||||||| |||       ||||  |||||||||||| || |||||  |||||||||||||||||||||    
T  12596590 gcttgttattcttttcaacttttatgaggcttctctctatcaggtatcagcactgttattccaatatccgcttgaagatcacacccatttagtatctctg 12596491  T
Q  94 taacataagctctatccttaccgataaagaaacaacagacatcaagaaatatattcttttccatatgatcctctaaaccatcaaagcttatttttagttt 193  Q
    |||||||||| |||||||||||||||||||||||||| | |||||||||||||| |||||||||| |||||  |||||| || || ||||||||||||||    
T  12596490 taacataagcactatccttaccgataaagaaacaacaaatatcaagaaatatatccttttccatacgatcccttaaaccttcgaaacttatttttagttt 12596391  T
Q  194 ctcgtgtatttgatcattgggtatcttttgtagcttggata 234  Q
    || |||||||| ||||||| ||||||||| |||||| ||||    
T  12596390 cttgtgtatttcatcattgagtatcttttttagctttgata 12596350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 153
Target Start/End: Complemental strand, 30416784 - 30416632
Alignment:
Q  1 gcttgttattcttttcaacttttaggaggcttctctctaccagcacttctattccaatatcagcatgaagtccacacccatttagtatctctgtaacata 100  Q
    |||||||||||||||||||||||| |||||| | |||||  || ||   ||||||||||  ||||  ||||||||| |||||||| ||||| ||||||||    
T  30416784 gcttgttattcttttcaacttttaagaggctccgctctatgaggacagatattccaatactagcaaaaagtccacagccatttagaatctcagtaacata 30416685  T
Q  101 agctctatccttaccgataaagaaacaacagacatcaagaaatatattctttt 153  Q
    |||||| ||||| ||||||||||||||||| |  ||||||||||||| |||||    
T  30416684 agctctgtccttgccgataaagaaacaacatatgtcaagaaatatatcctttt 30416632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 4 - 181
Target Start/End: Complemental strand, 20837310 - 20837133
Alignment:
Q  4 tgttattcttttcaacttttaggaggcttctctctaccagcacttctattccaatatcagcatgaagtccacacccatttagtatctctgtaacataagc 103  Q
    ||||||||||||| ||||||| |||||| | |||||  || |    ||||||||||||||||||||||||||||||||| |||||||||||||||| |||    
T  20837310 tgttattcttttcgacttttacgaggctgcgctctatgagaatagatattccaatatcagcatgaagtccacacccattaagtatctctgtaacatcagc 20837211  T
Q  104 tctatccttaccgataaagaaacaacagacatcaagaaatatattcttttccatatgatcctctaaaccatcaaagct 181  Q
    ||| | ||| || || ||||||||||| |  ||||||||||| | || || | ||| ||| |||||||||||| ||||    
T  20837210 tctgttctttccaatgaagaaacaacatatgtcaagaaatatgtcctgtttcgtataatcttctaaaccatcatagct 20837133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 4 - 181
Target Start/End: Complemental strand, 20810955 - 20810778
Alignment:
Q  4 tgttattcttttcaacttttaggaggcttctctctaccagcacttctattccaatatcagcatgaagtccacacccatttagtatctctgtaacataagc 103  Q
    ||||||||||||| ||||||| |||||| | |||||  || |    ||||||| ||| ||||||||||||||||||||| |||||||||||||||| |||    
T  20810955 tgttattcttttcgacttttacgaggctgcgctctatgagaatagatattccactataagcatgaagtccacacccattaagtatctctgtaacatcagc 20810856  T
Q  104 tctatccttaccgataaagaaacaacagacatcaagaaatatattcttttccatatgatcctctaaaccatcaaagct 181  Q
    ||| | ||| || || ||||||||||| |  ||||||||||| | ||||| | ||| ||| |||||||||||| ||||    
T  20810855 tctgttctttccaatgaagaaacaacatatgtcaagaaatatgtccttttgcgtataatcttctaaaccatcatagct 20810778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 174; Significance: 1e-93; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 1 - 234
Target Start/End: Complemental strand, 3363071 - 3362838
Alignment:
Q  1 gcttgttattcttttcaacttttaggaggcttctctctaccagcacttctattccaatatcagcatgaagtccacacccatttagtatctctgtaacata 100  Q
    |||| ||||||||||||||||||| |||||||||||||| || ||||  ||||||||||||||||| ||||||||| ||||||||||||| |||||||||    
T  3363071 gctttttattcttttcaacttttatgaggcttctctctatcaacactgttattccaatatcagcattaagtccacaaccatttagtatctttgtaacata 3362972  T
Q  101 agctctatccttaccgataaagaaacaacagacatcaagaaatatattcttttccatatgatcctctaaaccatcaaagcttatttttagtttctcgtgt 200  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||| ||||||||    
T  3362971 agctctatccttaccgataaagaaacagcagacatcaagaaatatattcttttccatacgatcctttaaaccatcaaagcttatttttagtatctcgtgt 3362872  T
Q  201 atttgatcattgggtatcttttgtagcttggata 234  Q
    |||||||||||||||||||||| |||||| ||||    
T  3362871 atttgatcattgggtatcttttctagctttgata 3362838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 3392812 - 3393033
Alignment:
Q  1 gcttgttattcttttcaacttttaggaggcttctctctaccagcacttctattccaatatcagcatgaagtccacacccatttagtatctctgtaacata 100  Q
    |||| ||||||||||||||||||| |||||||||||||| || ||||  ||||||||||||||||||||||||||| ||||||||||||| |||||||||    
T  3392812 gctttttattcttttcaacttttatgaggcttctctctatcaacactgttattccaatatcagcatgaagtccacaaccatttagtatctttgtaacata 3392911  T
Q  101 agctctatccttaccgataaagaaacaacagacatcaagaaatatattcttttccatatgatcctctaaaccatcaaagcttatttttagtttctcgtgt 200  Q
    |||||||||||| |||||||||||||||||||||||||||||||||| |||||||||| ||||   |||||||| |||||| |||||||||||||| |||    
T  3392912 agctctatccttgccgataaagaaacaacagacatcaagaaatatatccttttccatacgatcgcttaaaccattaaagctaatttttagtttctcatgt 3393011  T
Q  201 atttgatcattgggtatctttt 222  Q
    ||||||||||||||||| ||||    
T  3393012 atttgatcattgggtatttttt 3393033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 1 - 234
Target Start/End: Complemental strand, 3313701 - 3313468
Alignment:
Q  1 gcttgttattcttttcaacttttaggaggcttctctctaccagcacttctattccaatatcagcatgaagtccacacccatttagtatctctgtaacata 100  Q
    ||||||||| |||||||| |||||  ||||||| ||| | |||||||  ||||||||||||||||||||||||||| ||||||||||| | ||| |||||    
T  3313701 gcttgttatacttttcaatttttattaggcttcgctcaatcagcactgttattccaatatcagcatgaagtccacaaccatttagtatatttgtgacata 3313602  T
Q  101 agctctatccttaccgataaagaaacaacagacatcaagaaatatattcttttccatatgatcctctaaaccatcaaagcttatttttagtttctcgtgt 200  Q
     ||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||  |||||| ||||||||||||||||||||||| |||    
T  3313601 tgctctatccttaccgataaagaaacaacacacatcaagaaatatatccttttccatatgatcccttaaaccgtcaaagcttatttttagtttctcatgt 3313502  T
Q  201 atttgatcattgggtatcttttgtagcttggata 234  Q
    ||||||||||| |||||||||| |||||| ||||    
T  3313501 atttgatcattaggtatcttttctagctttgata 3313468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 1 - 214
Target Start/End: Original strand, 3408546 - 3408759
Alignment:
Q  1 gcttgttattcttttcaacttttaggaggcttctctctaccagcacttctattccaatatcagcatgaagtccacacccatttagtatctctgtaacata 100  Q
    ||||||||||||| ||||||||||||||||| |  ||||  || ||  |||||||||||||||||| ||||||||| |||||||||||||||||||||||    
T  3408546 gcttgttattcttctcaacttttaggaggctccggtctatgaggaccgctattccaatatcagcataaagtccacagccatttagtatctctgtaacata 3408645  T
Q  101 agctctatccttaccgataaagaaacaacagacatcaagaaatatattcttttccatatgatcctctaaaccatcaaagcttatttttagtttctcgtgt 200  Q
     || || |||||||| |||||||||||||| |  ||||||||||||| |||| |||||| ||||| |||||||||| |||||||| | || ||||||||     
T  3408646 ggccctgtccttaccaataaagaaacaacaaatgtcaagaaatatatcctttaccatatcatcctttaaaccatcatagcttattctcagcttctcgtgc 3408745  T
Q  201 atttgatcattggg 214  Q
    | ||||||||||||    
T  3408746 acttgatcattggg 3408759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 1 - 214
Target Start/End: Original strand, 7165893 - 7166106
Alignment:
Q  1 gcttgttattcttttcaacttttaggaggcttctctctaccagcacttctattccaatatcagcatgaagtccacacccatttagtatctctgtaacata 100  Q
    |||||||||||||||||| ||| |  ||||| | |||||| || ||   ||||||||| ||||||| ||||||||| |||||||||||||| ||||||||    
T  7165893 gcttgttattcttttcaattttcacaaggctccgctctacgaggaccgttattccaatgtcagcataaagtccacaaccatttagtatctcagtaacata 7165992  T
Q  101 agctctatccttaccgataaagaaacaacagacatcaagaaatatattcttttccatatgatcctctaaaccatcaaagcttatttttagtttctcgtgt 200  Q
     ||||||||||| ||||||||||||||||| | |||||||||||||| |||| |||||| ||||| |||||| ||| |||||||| | |||||||| ||     
T  7165993 ggctctatccttgccgataaagaaacaacatatatcaagaaatatatcctttgccatatcatcctttaaaccgtcatagcttattctcagtttctcttgc 7166092  T
Q  201 atttgatcattggg 214  Q
    | ||||||||||||    
T  7166093 acttgatcattggg 7166106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 1 - 214
Target Start/End: Original strand, 3287681 - 3287894
Alignment:
Q  1 gcttgttattcttttcaacttttaggaggcttctctctaccagcacttctattccaatatcagcatgaagtccacacccatttagtatctctgtaacata 100  Q
    |||||||||  || ||||||||||||||||| | |||||| || |||  ||||||| | ||||||| ||||||||| ||||||||||||||||| |||||    
T  3287681 gcttgttataattgtcaacttttaggaggctccgctctacgaggactgttattccagtgtcagcatcaagtccacagccatttagtatctctgtgacata 3287780  T
Q  101 agctctatccttaccgataaagaaacaacagacatcaagaaatatattcttttccatatgatcctctaaaccatcaaagcttatttttagtttctcgtgt 200  Q
     | ||| |||||||| |||||||||||||| |  ||||||||||||| |||||||||||  |  | ||| |||||| |||||||| | ||||| || ||     
T  3287781 ggttctgtccttaccaataaagaaacaacaaatgtcaagaaatatatccttttccatatcttgatttaacccatcatagcttattctcagtttttcttgg 3287880  T
Q  201 atttgatcattggg 214  Q
    ||||||| ||||||    
T  3287881 atttgatgattggg 3287894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 1 - 214
Target Start/End: Original strand, 3326209 - 3326422
Alignment:
Q  1 gcttgttattcttttcaacttttaggaggcttctctctaccagcacttctattccaatatcagcatgaagtccacacccatttagtatctctgtaacata 100  Q
    |||||||||||||||||| |||||  ||||| | |||||  || ||   |||||||||||  |||| ||||||||| |||||||||||||||||||| |     
T  3326209 gcttgttattcttttcaatttttacaaggctccgctctatgagaacacttattccaatatttgcataaagtccacagccatttagtatctctgtaacttc 3326308  T
Q  101 agctctatccttaccgataaagaaacaacagacatcaagaaatatattcttttccatatgatcctctaaaccatcaaagcttatttttagtttctcgtgt 200  Q
     ||||||||||| || |||||||||||||| |  |||||||||||||  |||||||||| ||||| |||||||||  |||| ||| | |||||||| ||     
T  3326309 ggctctatccttgcctataaagaaacaacatatgtcaagaaatatatctttttccatatcatcctttaaaccatcgtagctaattctcagtttctcttgc 3326408  T
Q  201 atttgatcattggg 214  Q
    | ||||||||||||    
T  3326409 acttgatcattggg 3326422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 49 - 214
Target Start/End: Original strand, 3263802 - 3263967
Alignment:
Q  49 ctattccaatatcagcatgaagtccacacccatttagtatctctgtaacataagctctatccttaccgataaagaaacaacagacatcaagaaatatatt 148  Q
    ||||||||||| |||||||||||||||| ||||| ||||||||||| || |||||||| || || ||||||||||||||||| |  |||||||||||||     
T  3263802 ctattccaataacagcatgaagtccacagccattaagtatctctgttacgtaagctctgtctttgccgataaagaaacaacatatgtcaagaaatatatc 3263901  T
Q  149 cttttccatatgatcctctaaaccatcaaagcttatttttagtttctcgtgtatttgatcattggg 214  Q
    ||||||||||  ||||| |||||||||  | |||||| | || ||||| || | ||||||||||||    
T  3263902 cttttccataccatcctttaaaccatcgtaacttattctcagcttctcttgcacttgatcattggg 3263967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 3 - 217
Target Start/End: Original strand, 3268454 - 3268668
Alignment:
Q  3 ttgttattcttttcaacttttaggaggcttctctctaccagcacttctattccaatatcagcatgaagtccacacccatttagtatctctgtaacataag 102  Q
    |||||| ||||||||| ||||||||||||||||||||  || ||   |||||||||| |||||| ||   |||| |||| ||  ||||||| |||||| |    
T  3268454 ttgttactcttttcaatttttaggaggcttctctctatgaggacagttattccaataccagcataaaagtcacaaccatctataatctctgaaacatatg 3268553  T
Q  103 ctctatccttaccgataaagaaacaacagacatcaagaaatatattcttttccatatgatcctctaaaccatcaaagcttatttttagtttctcgtgtat 202  Q
    |||| |||||||| |||||||||||||| |  ||||||||||||| ||||||  ||| || || |||||||||| |||||||| |||||||||| || |     
T  3268554 ctctgtccttaccaataaagaaacaacatatgtcaagaaatatatccttttctgtatcattctttaaaccatcatagcttattcttagtttctcatgcac 3268653  T
Q  203 ttgatcattgggtat 217  Q
    || ||||| ||||||    
T  3268654 tttatcatcgggtat 3268668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 15 - 187
Target Start/End: Complemental strand, 13786475 - 13786303
Alignment:
Q  15 tcaacttttaggaggcttctctctaccagcacttctattccaatatcagcatgaagtccacacccatttagtatctctgtaacataagctctatccttac 114  Q
    |||||||||| |||||| | |||||  || ||  |||||||||||||||||  ||||||||| ||||||||||||||||||||||| ||| | |||| ||    
T  13786475 tcaacttttaagaggctccgctctatgaggacagctattccaatatcagcacaaagtccacagccatttagtatctctgtaacataggctttgtcctcac 13786376  T
Q  115 cgataaagaaacaacagacatcaagaaatatattcttttccatatgatcctctaaaccatcaaagcttatttt 187  Q
    | |||||||||||||| |  |||||||||| |  |||| |||||| ||||  |||||||||| | ||||||||    
T  13786375 caataaagaaacaacatatgtcaagaaatacagcctttaccatatcatccattaaaccatcataacttatttt 13786303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 154
Target Start/End: Complemental strand, 31174702 - 31174549
Alignment:
Q  1 gcttgttattcttttcaacttttaggaggcttctctctaccagcacttctattccaatatcagcatgaagtccacacccatttagtatctctgtaacata 100  Q
    |||||||||| || |||||||||| |||||| | ||| |  || ||  |||||||||||||||||||||| ||||| ||||| ||||||||||||||||     
T  31174702 gcttgttatttttatcaacttttatgaggctgcgctcaatgaggacaactattccaatatcagcatgaagcccacagccattaagtatctctgtaacatc 31174603  T
Q  101 agctctatccttaccgataaagaaacaacagacatcaagaaatatattcttttc 154  Q
    |||||| | ||| || || ||||||||||| |  ||||||||||||| ||||||    
T  31174602 agctctgttctttccaatgaagaaacaacatatgtcaagaaatatatccttttc 31174549  T

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Target: chr8; HSP #12
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 1 - 145
Target Start/End: Original strand, 3399846 - 3399990
Alignment:
Q  1 gcttgttattcttttcaacttttaggaggcttctctctaccagcacttctattccaatatcagcatgaagtccacacccatttagtatctctgtaacata 100  Q
    |||||||||||||||| |||||||||||||| | |||||  || |    |||||||||||||||||||||||||||  |||| ||||||||||||||||     
T  3399846 gcttgttattcttttcgacttttaggaggctgcgctctatgagaatagatattccaatatcagcatgaagtccacatgcattaagtatctctgtaacatc 3399945  T
Q  101 agctctatccttaccgataaagaaacaacagacatcaagaaatat 145  Q
    |||||| | ||| || || ||||||||||| |  |||||||||||    
T  3399946 agctctgttctttccaatcaagaaacaacatatgtcaagaaatat 3399990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 50 - 146
Target Start/End: Complemental strand, 13807699 - 13807603
Alignment:
Q  50 tattccaatatcagcatgaagtccacacccatttagtatctctgtaacataagctctatccttaccgataaagaaacaacagacatcaagaaatata 146  Q
    |||||| |||||||||| ||||||||| |||| ||| ||||||| |||||| ||||| | ||| ||||||||||||||||| |  ||||||||||||    
T  13807699 tattcccatatcagcattaagtccacaaccatctagaatctctgaaacataggctctcttctttccgataaagaaacaacaaatgtcaagaaatata 13807603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 81; Significance: 3e-38; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 3 - 211
Target Start/End: Original strand, 32412191 - 32412399
Alignment:
Q  3 ttgttattcttttcaacttttaggaggcttctctctaccagcacttctattccaatatcagcatgaagtccacacccatttagtatctctgtaacataag 102  Q
    |||||||||||||||| |||||  |||||||  ||||| || ||   ||||||||| ||||||| |||||||| ||||||||||||||  |||||||| |    
T  32412191 ttgttattcttttcaatttttacaaggcttcgttctacgagaaccgttattccaatgtcagcataaagtccacgcccatttagtatcttggtaacatagg 32412290  T
Q  103 ctctatccttaccgataaagaaacaacagacatcaagaaatatattcttttccatatgatcctctaaaccatcaaagcttatttttagtttctcgtgtat 202  Q
    | || ||||| |||||||||||| |||| |  ||||||||||||| ||||||||||| ||||| |||||| ||| |||||||| |||||||||| ||||     
T  32412291 ccctgtccttgccgataaagaaaaaacatatgtcaagaaatatatccttttccatatcatcctttaaaccgtcatagcttattcttagtttctcttgtac 32412390  T
Q  203 ttgatcatt 211  Q
    ||| |||||    
T  32412391 ttggtcatt 32412399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 146
Target Start/End: Original strand, 6907076 - 6907221
Alignment:
Q  1 gcttgttattcttttcaacttttaggaggcttctctctaccagcacttctattccaatatcagcatgaagtccacacccatttagtatctctgtaacata 100  Q
    ||||||||||||||||||||||||  ||||| |||||||  || ||  ||||||| ||| |||||  ||||||||| || ||||||||||| ||||||||    
T  6907076 gcttgttattcttttcaacttttaaaaggctcctctctatgaggacagctattcctataccagcaaaaagtccacaaccgtttagtatctcggtaacata 6907175  T
Q  101 agctctatccttaccgataaagaaacaacagacatcaagaaatata 146  Q
      |||| ||||| ||||||||||||||||| |||||||||||||||    
T  6907176 gtctctgtccttgccgataaagaaacaacatacatcaagaaatata 6907221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0468 (Bit Score: 74; Significance: 5e-34; HSPs: 1)
Name: scaffold0468
Description:

Target: scaffold0468; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 1 - 146
Target Start/End: Original strand, 7482 - 7627
Alignment:
Q  1 gcttgttattcttttcaacttttaggaggcttctctctaccagcacttctattccaatatcagcatgaagtccacacccatttagtatctctgtaacata 100  Q
    |||||||||||||||| |||||||| ||||| |||||||  || ||  |||||||||||||||||  ||||||||| |||||||||||||| ||||||||    
T  7482 gcttgttattcttttcgacttttagaaggctcctctctatgaggacagctattccaatatcagcaaaaagtccacaaccatttagtatctcggtaacata 7581  T
Q  101 agctctatccttaccgataaagaaacaacagacatcaagaaatata 146  Q
      || | ||||| ||||||||||||||||| |||||||||||||||    
T  7582 gtctttgtccttgccgataaagaaacaacatacatcaagaaatata 7627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 174
Target Start/End: Original strand, 14768143 - 14768317
Alignment:
Q  1 gcttgttattcttttcaacttttaggaggcttctctctaccagcacttctattccaatatcagcatgaagtccacacccatttagtatctctgtaac-at 99  Q
    |||||||||||||| ||||||||| |||||| |  ||||  || ||   ||||||||||||||||| ||||||||| ||||||| ||||||||||||  |    
T  14768143 gcttgttattctttacaacttttaagaggctccgttctatgaggacagatattccaatatcagcataaagtccacatccatttaatatctctgtaacgtt 14768242  T
Q  100 aagctctatccttaccgataaagaaacaacagacatcaagaaatatattcttttccatatgatcctctaaaccat 174  Q
    | ||||||||||| || ||||||||| |||| |  ||||||||||||| |||||  | || ||||||||||||||    
T  14768243 aggctctatccttgccaataaagaaaaaacatatgtcaagaaatatatccttttttaaatcatcctctaaaccat 14768317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 2 - 181
Target Start/End: Original strand, 8372957 - 8373136
Alignment:
Q  2 cttgttattcttttcaacttttaggaggcttctctctaccagcacttctattccaatatcagcatgaagtccacacccatttagtatctctgtaacataa 101  Q
    |||||||||||| |||||||||| |||||| | |||||  || ||   || |||||||||||||||||||||||| ||||| || |||||||| |||| |    
T  8372957 cttgttattcttatcaacttttatgaggctacgctctataagaacagatactccaatatcagcatgaagtccacaaccattaaggatctctgtgacatca 8373056  T
Q  102 gctctatccttaccgataaagaaacaacagacatcaagaaatatattcttttccatatgatcctctaaaccatcaaagct 181  Q
     |||| | ||| || || ||||||||||| |  ||||||||||||| ||||||  ||| ||| |||||||||||| ||||    
T  8373057 actctgttctttccaatgaagaaacaacatatgtcaagaaatatatccttttctgtataatcttctaaaccatcatagct 8373136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 79 - 181
Target Start/End: Original strand, 31060156 - 31060258
Alignment:
Q  79 catttagtatctctgtaacataagctctatccttaccgataaagaaacaacagacatcaagaaatatattcttttccatatgatcctctaaaccatcaaa 178  Q
    |||| |||||||||||||||| |||||| | ||| || || ||||||||||| |  |||| |||||||| ||||  ||||| ||| ||||||||||| ||    
T  31060156 cattaagtatctctgtaacatcagctctgttctttccaatgaagaaacaacatatgtcaaaaaatatatcctttaacatataatcttctaaaccatcgaa 31060255  T
Q  179 gct 181  Q
    |||    
T  31060256 gct 31060258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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