View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8175_low_73 (Length: 250)
Name: NF8175_low_73
Description: NF8175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8175_low_73 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 23271571 - 23271810
Alignment:
| Q |
1 |
tcgatcacggcacgtccaccagcatgaatacaaaaatgctcaaacgcttgtttgaaatcaggaatataaggcttcattttagggttgaagattttctttc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23271571 |
tcgatcacggcacgtccaccagcatgaatacaaaaatgctcaaacgcttgtttgaaatcaggaatataaggcttcattttagggttgaagattttctttc |
23271670 |
T |
|
| Q |
101 |
caatgagtgtgaaaagaaagagtaattgttctgaagcaggtagaacaagaggaccaatagttgttatatttgatttcaatgcttctcctgctatagccat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23271671 |
caatgagtgtgaaaagaaagagtaattgttctgaagcaggtagaacaagaggaccaatagttgttatatttgatttcaatgcttctcctgctatagccat |
23271770 |
T |
|
| Q |
201 |
aagatccttttgaagtgaaattccaactttaccttctctg |
240 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23271771 |
aagatccttttgaagtgaaattccaactttaccttctctg |
23271810 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 114; Significance: 6e-58; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 4 - 237
Target Start/End: Original strand, 50087313 - 50087546
Alignment:
| Q |
4 |
atcacggcacgtccaccagcatgaatacaaaaatgctcaaacgcttgtttgaaatcaggaatataaggcttcattttagggttgaagattttctttccaa |
103 |
Q |
| |
|
||||| ||||| ||||||||||| ||||||||||| ||||| |||||||| |||||||| ||||| || ||| ||||||||| || ||||| | |||| |
|
|
| T |
50087313 |
atcacagcacgaccaccagcatgtatacaaaaatgttcaaaagcttgtttaaaatcaggtatatatggtttccatttagggttaaatatttttctaccaa |
50087412 |
T |
|
| Q |
104 |
tgagtgtgaaaagaaagagtaattgttctgaagcaggtagaacaagaggaccaatagttgttatatttgatttcaatgcttctcctgctatagccataag |
203 |
Q |
| |
|
||||||||| ||||| ||||||||||||||||| |||| |||||||||||| || ||||||||||||||||| | |||||| ||||| || |||||||| |
|
|
| T |
50087413 |
tgagtgtgatgagaaaaagtaattgttctgaagctggtaaaacaagaggacccattgttgttatatttgatttaagtgcttcacctgcaattgccataag |
50087512 |
T |
|
| Q |
204 |
atccttttgaagtgaaattccaactttaccttct |
237 |
Q |
| |
|
||| ||||||||||| |||||||||||||||||| |
|
|
| T |
50087513 |
atctttttgaagtgatattccaactttaccttct |
50087546 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 15 - 65
Target Start/End: Complemental strand, 15239492 - 15239442
Alignment:
| Q |
15 |
tccaccagcatgaatacaaaaatgctcaaacgcttgtttgaaatcaggaat |
65 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||| ||| ||||||||||| |
|
|
| T |
15239492 |
tccaccagcatgaatacaaaaatgctcaaaagctaatttaaaatcaggaat |
15239442 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 15 - 65
Target Start/End: Complemental strand, 34053191 - 34053141
Alignment:
| Q |
15 |
tccaccagcatgaatacaaaaatgctcaaacgcttgtttgaaatcaggaat |
65 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||| ||| ||||||||||| |
|
|
| T |
34053191 |
tccaccagcatgaatacaaaaatgctcaaaagctaatttaaaatcaggaat |
34053141 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 85; Significance: 1e-40; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 50 - 237
Target Start/End: Original strand, 33446564 - 33446752
Alignment:
| Q |
50 |
gtttgaaatcaggaatataaggcttcattttagggttgaagattttctttccaatgagtgtgaaaagaaagagtaattgttctgaagcaggtagaacaag |
149 |
Q |
| |
|
||||| |||| |||| ||||| |||||||||| ||||||||||||||| |||| ||||||||||||||||| ||||||| |||| | || |||||||| |
|
|
| T |
33446564 |
gtttggaatctggaacataagacttcattttataattgaagattttcttttcaataagtgtgaaaagaaagagcaattgttttgaaaccggaagaacaag |
33446663 |
T |
|
| Q |
150 |
aggaccaatagttgttatatttgatttcaatgcttctcctgctatagccataaga-tccttttgaagtgaaattccaactttaccttct |
237 |
Q |
| |
|
| | ||||||||| |||||||||||||||||||||||||| |||| ||||||||| | || | ||| |||||||||||||||| ||||| |
|
|
| T |
33446664 |
atggccaatagttattatatttgatttcaatgcttctcctactattgccataagattactctcgaaatgaaattccaactttagcttct |
33446752 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 15 - 76
Target Start/End: Original strand, 49041312 - 49041373
Alignment:
| Q |
15 |
tccaccagcatgaatacaaaaatgctcaaacgcttgtttgaaatcaggaatataaggcttca |
76 |
Q |
| |
|
|||||||||||||||||| ||||| ||||| ||| ||||||||| || |||||||| |||| |
|
|
| T |
49041312 |
tccaccagcatgaatacagaaatgttcaaaagctaatttgaaatctggtatataaggtttca |
49041373 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 103
Target Start/End: Complemental strand, 31333898 - 31333810
Alignment:
| Q |
15 |
tccaccagcatgaatacaaaaatgctcaaacgcttgtttgaaatcaggaatataaggcttcattttagggttgaagattttctttccaa |
103 |
Q |
| |
|
|||||| |||||||| || ||||| || || ||| | ||||||||||||||||||||||| || || ||||||| ||||||||||| |
|
|
| T |
31333898 |
tccaccggcatgaatgcagaaatgttcgaaagctagcttgaaatcaggaatataaggcttgatcttcatcttgaagagtttctttccaa |
31333810 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 16 - 74
Target Start/End: Complemental strand, 26453373 - 26453315
Alignment:
| Q |
16 |
ccaccagcatgaatacaaaaatgctcaaacgcttgtttgaaatcaggaatataaggctt |
74 |
Q |
| |
|
||||||||||||||||||||||||||||| || | || |||||||| ||||||||||| |
|
|
| T |
26453373 |
ccaccagcatgaatacaaaaatgctcaaaagcaagcttaaaatcaggtatataaggctt |
26453315 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University