View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8175_low_76 (Length: 248)
Name: NF8175_low_76
Description: NF8175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8175_low_76 |
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| [»] chr6 (1 HSPs) |
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| [»] chr8 (2 HSPs) |
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| [»] scaffold0054 (1 HSPs) |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 141; Significance: 5e-74; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 1 - 248
Target Start/End: Complemental strand, 17325653 - 17325410
Alignment:
| Q |
1 |
aacctttataccatggctacaaatacatttgtaaactgcaacatagaactatgatcatgatgaagtcattaatttttcttcactatgtaaattttataaa |
100 |
Q |
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| T |
17325653 |
aacctttgtaccacggcgacaaatacagttttaaactgaaacttagaactatgatcatgatgaagttattcatctttcttcactatgtaaattttataaa |
17325554 |
T |
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| Q |
101 |
aattatgttttcatcttgaatgaaaannnnnnnngcttgattttatgaataacctttgcagataaagaaatgcatatgaagttcgaaaatcagggcaaca |
200 |
Q |
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| T |
17325553 |
aattatgttttcatcttgaatggaaa-tttttttgcttgattttctgaataatctttgcagataaagaaatgcatatgaagttcgaaaatcagg---aga |
17325458 |
T |
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| Q |
201 |
tgccagtgttgcagattgctactgcagttgctacatcatttttaatat |
248 |
Q |
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| T |
17325457 |
tgccagtgttgcagacagctactgcagttgctacatcatttttaatat |
17325410 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 70; Significance: 1e-31; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 29 - 248
Target Start/End: Original strand, 13373779 - 13373997
Alignment:
| Q |
29 |
ttgtaaactgcaacatagaactatgatcatgatgaagtcattaatttttcttcactatgtaaattttataaaaattatgttt--tcatcttgaatgaaaa |
126 |
Q |
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| T |
13373779 |
ttgtagactgcaatttaaaactatggttatgatgaagtcattcattattcttgactatataagtcttataaaaattgtctttgttcatcttgaatggaaa |
13373878 |
T |
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| Q |
127 |
nnnnnnnngcttgattttatgaataacctttgcagataaagaaatgcatatgaagttcgaaaatcagggcaacatgccagtgttgcagattgctactgca |
226 |
Q |
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| T |
13373879 |
tttta---gcttgatttaacgagtaatgttggcagatgaagaaatgcttatgaagtcagaaaatcagggcaatatgccagtgttgcagacagctactgca |
13373975 |
T |
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| Q |
227 |
gttgctacatcatttttaatat |
248 |
Q |
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| T |
13373976 |
gttgctacatcatttttaatat |
13373997 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 170 - 248
Target Start/End: Original strand, 13381098 - 13381176
Alignment:
| Q |
170 |
atgcatatgaagttcgaaaatcagggcaacatgccagtgttgcagattgctactgcagttgctacatcatttttaatat |
248 |
Q |
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| T |
13381098 |
atgcatatgaaatcagaaaatcagggaaaaatgccagtgttgcagactgctactgcagttgctacatcatttttaatat |
13381176 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0054 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: scaffold0054
Description:
Target: scaffold0054; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 158 - 248
Target Start/End: Original strand, 13587 - 13677
Alignment:
| Q |
158 |
gcagataaagaaatgcatatgaagttcgaaaatcagggcaacatgccagtgttgcagattgctactgcagttgctacatcatttttaatat |
248 |
Q |
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| T |
13587 |
gcagatgaagaaatgcttatgaagtcagaaaatcagggcaatatgccagtgttgcagacagctactgcagttgctacatcatttttaatat |
13677 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 160 - 248
Target Start/End: Original strand, 22012280 - 22012368
Alignment:
| Q |
160 |
agataaagaaatgcatatgaagttcgaaaatcagggcaacatgccagtgttgcagattgctactgcagttgctacatcatttttaatat |
248 |
Q |
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| T |
22012280 |
agatgaagaaatgcttatgaagtcagaaaatcagggcaatatgccagtgttgcagacagctactgcagttgctacatcatttttaatat |
22012368 |
T |
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