View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8175_low_79 (Length: 241)
Name: NF8175_low_79
Description: NF8175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8175_low_79 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 177; Significance: 2e-95; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 18 - 241
Target Start/End: Original strand, 32897739 - 32897952
Alignment:
| Q |
18 |
aactgggttatgcatgaatatcgccttgaaggaaaatttgcttatcacttcctctctagaaactctaaggtactaatttttctttcatttcttcatcata |
117 |
Q |
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| T |
32897739 |
aactgggttatgcatgaatatcgccttgaaggaaaatttgcttatcacttcctctctagaaactctaaggtactaatttttctttcatttcttcatcata |
32897838 |
T |
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| Q |
118 |
gctattttaatttagtgaatttcaagtgttctcaagtgctttgtagtgtagcactttgttgtaattgtttgcatatgagccgcattttgatcctttcaaa |
217 |
Q |
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| T |
32897839 |
gctattttaatttagtgaatttcaagtgt----------tttgtagtgtagtactttgttgtaattatttgtatatgagccgcattttgatcctttcaaa |
32897928 |
T |
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| Q |
218 |
agactatgagagataggtggaatc |
241 |
Q |
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| T |
32897929 |
agactatgagagataggtggaatc |
32897952 |
T |
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