View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8175_low_8 (Length: 551)
Name: NF8175_low_8
Description: NF8175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8175_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 508; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 508; E-Value: 0
Query Start/End: Original strand, 18 - 541
Target Start/End: Complemental strand, 2467319 - 2466796
Alignment:
| Q |
18 |
acctctaagtcataattcagatacagaaactcaccaccttgtaccacttcagttttgtgcaagcaacaaaaataaaatgtccttaattgcagaagcacca |
117 |
Q |
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| T |
2467319 |
acctctaagtcataattcagatacagaaactcaccacctagtaccacttcagttttgtgcaagcaacaaaaataaaatgtccttaattgcagaagcacca |
2467220 |
T |
|
| Q |
118 |
gaatttcttcaagttttctcagatggaacggtgagacgtttcaacccagaaatagcaccaccctcattagattcatccaacaaatacaaatccaaagacg |
217 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2467219 |
gaatttcttcaagttttctcagatggaacggtgaaacgtttcaacccagaaatagcaccaccctcattagattcatccaacaaatacaaatccaaagaca |
2467120 |
T |
|
| Q |
218 |
taatcattgaccctacaaaacccatcacaggaagaatcttcattccaaacaatccaaccaaaaaactcctacctctcttagtttatttccatggtggtgg |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2467119 |
taatcattgaccctacaaaacccatcacaggaagaatcttcattccaaacaatccaaccaaaaaactcctacctctcttagtttatttccatggtggtgg |
2467020 |
T |
|
| Q |
318 |
cttttgcattggttccacaacatggcttggttacaacaacttcctcggagatttctccgtcgcgtcacagtccattattctctctgttgattaccggtta |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2467019 |
cttttgcattggttccacaacatggcttggttacaacaacttcctcggagatttctccgtcgcgtcacagtccattattctctctgttgattaccggtta |
2466920 |
T |
|
| Q |
418 |
gcaccggagcatcgtcttccaatagcttatgaagattgttactcatcacttgaatggcttggtgaaaatgtgaaaaccgaaccgtttctacgacatgctg |
517 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2466919 |
gcaccggagaatcgtcttccaatagcttatgaagattgttactcatcacttgaatggcttggtgaaaatgtgaaaaccgaaccgtttctacgacatgctg |
2466820 |
T |
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| Q |
518 |
atttatcaaatgtttttctctctg |
541 |
Q |
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|||||||||||||||||||||||| |
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| T |
2466819 |
atttatcaaatgtttttctctctg |
2466796 |
T |
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